Wall clock time and date at job start Tue Mar 31 2020 12:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99984 * 2 1 4 4 H 1.48494 * 109.46644 * 269.99595 * 3 2 1 5 5 H 1.48494 * 109.47183 * 29.99912 * 3 2 1 6 6 H 1.48504 * 109.46973 * 149.99957 * 3 2 1 7 7 C 1.38950 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00087 * 0.02562 * 7 2 1 9 9 N 1.37102 * 119.99590 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99853 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99787 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00031 * 179.97438 * 10 9 7 13 13 O 1.45208 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34847 * 116.99869 * 180.02562 * 13 12 10 15 15 O 1.21576 * 119.99887 * 359.97438 * 14 13 12 16 16 C 1.46887 * 119.99934 * 179.97438 * 14 13 12 17 17 C 1.35956 * 125.44244 * 179.97438 * 16 14 13 18 18 C 1.41548 * 107.72685 * 180.02562 * 17 16 14 19 19 C 1.40133 * 133.34839 * 180.31877 * 18 17 16 20 20 C 1.36520 * 119.82412 * 180.18754 * 19 18 17 21 21 Cl 1.73599 * 119.71085 * 179.73430 * 20 19 18 22 22 C 1.39053 * 120.58660 * 359.45437 * 20 19 18 23 23 C 1.37662 * 120.63910 * 0.28004 * 22 20 19 24 24 C 1.39232 * 119.82808 * 359.97438 * 23 22 20 25 25 N 1.37508 * 133.15255 * 180.02562 * 24 23 22 26 26 H 0.97007 * 125.61390 * 0.02562 * 25 24 23 27 27 H 0.97000 * 119.99689 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00161 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47415 * 59.99519 * 12 10 9 30 30 H 1.09000 * 109.46838 * 299.99555 * 12 10 9 31 31 H 1.07997 * 126.13306 * 0.04204 * 17 16 14 32 32 H 1.08001 * 120.09116 * 359.94455 * 19 18 17 33 33 H 1.07993 * 119.67862 * 180.29834 * 22 20 19 34 34 H 1.07998 * 120.08908 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 8 6.0447 -3.7396 0.0005 14 6 7.3815 -3.9163 0.0009 15 8 8.1221 -2.9521 0.0013 16 6 7.9429 -5.2737 0.0009 17 6 9.2678 -5.5788 0.0009 18 6 9.3851 -6.9894 0.0003 19 6 10.4804 -7.8636 0.0056 20 6 10.2723 -9.2128 -0.0006 21 17 11.6313 -10.2930 -0.0009 22 6 8.9814 -9.7296 -0.0008 23 6 7.8898 -8.8908 -0.0006 24 6 8.0767 -7.5111 0.0004 25 7 7.2089 -6.4445 0.0014 26 1 6.2406 -6.5040 0.0018 27 1 -0.4850 0.8401 0.0004 28 1 3.8648 -0.3633 0.0007 29 1 5.9241 -1.8567 0.8909 30 1 5.9240 -1.8568 -0.8890 31 1 10.0842 -4.8718 0.0014 32 1 11.4865 -7.4710 0.0107 33 1 8.8337 -10.7994 -0.0009 34 1 6.8911 -9.3018 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:25 Heat of formation + Delta-G solvation = -63.066147 kcal Electronic energy + Delta-G solvation = -22714.611983 eV Core-core repulsion = 18832.285428 eV Total energy + Delta-G solvation = -3882.326555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98754 -40.27365 -38.44307 -37.74747 -36.40968 -36.19250 -34.15261 -32.65014 -31.88518 -30.15344 -29.54270 -28.59459 -25.24054 -24.10526 -22.56393 -21.89098 -20.54061 -19.75496 -18.83219 -18.63370 -17.80664 -16.72545 -16.66709 -16.58519 -15.79361 -15.21619 -15.08955 -14.92932 -14.49611 -14.18122 -14.13050 -13.77319 -13.43553 -13.18368 -13.02056 -12.76400 -12.57846 -12.41439 -12.28835 -11.74017 -11.32914 -11.19469 -11.16337 -10.94333 -10.72654 -10.69836 -10.37405 -10.11969 -9.75422 -8.77967 -8.62730 -8.37118 -8.23834 -6.46142 -3.99582 0.23203 1.00858 1.56742 1.83554 2.25105 2.66650 2.82827 2.93479 2.98418 3.07651 3.32742 3.45616 3.97601 4.17582 4.23857 4.53597 4.71004 4.73054 4.88845 4.94945 5.03544 5.05145 5.23326 5.43064 5.43762 5.53400 5.56475 5.73438 5.87600 6.03266 6.16415 6.20446 6.48758 7.01764 7.35810 7.53440 7.92422 8.39330 8.75812 9.21903 9.55968 10.65853 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.002058 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.386572 B =13600.719011 C =14266.960761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.446 3.554 11 O -0.560 6.560 12 C 0.060 3.940 13 O -0.325 6.325 14 C 0.527 3.473 15 O -0.492 6.492 16 C 0.047 3.953 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.047 4.047 20 C -0.063 4.063 21 Cl -0.074 7.074 22 C -0.080 4.080 23 C -0.113 4.113 24 C 0.120 3.880 25 N -0.559 5.559 26 H 0.434 0.566 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.163 0.837 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.456 -14.703 -0.011 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.216 5.216 10 C 0.231 3.769 11 O -0.442 6.442 12 C -0.017 4.017 13 O -0.240 6.240 14 C 0.371 3.629 15 O -0.380 6.380 16 C -0.061 4.061 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.066 4.066 20 C -0.090 4.090 21 Cl -0.046 7.046 22 C -0.101 4.101 23 C -0.133 4.133 24 C 0.007 3.993 25 N -0.162 5.162 26 H 0.274 0.726 27 H 0.087 0.913 28 H 0.207 0.793 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.181 0.819 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.937 -14.989 -0.010 25.749 hybrid contribution 0.174 1.489 0.017 1.499 sum 21.111 -13.500 0.007 25.059 Atomic orbital electron populations 1.69613 1.05675 1.27880 1.47954 1.25054 0.95543 0.98141 0.97124 0.86670 0.79861 0.83779 0.79156 1.19334 1.19870 1.19319 1.19417 0.78590 0.96899 1.48909 0.85995 1.42026 1.07679 1.05691 1.66176 1.19128 0.86779 0.85204 0.85827 1.90597 1.69002 1.30727 1.53908 1.22830 0.95297 0.79583 1.04008 1.86601 1.22029 1.32135 1.83227 1.19970 0.81394 0.87852 0.73713 1.90910 1.60687 1.40475 1.45890 1.19077 0.91095 0.83641 1.12333 1.20883 0.94131 0.93965 1.03345 1.17931 0.92093 0.93101 1.08757 1.20214 0.98591 0.90441 0.97366 1.20234 0.88632 0.90667 1.09502 1.98367 1.44414 1.64535 1.97260 1.20753 0.89719 1.00258 0.99341 1.20072 0.99739 0.88843 1.04668 1.18413 0.89387 0.89323 1.02146 1.42099 1.09534 1.03243 1.61319 0.72561 0.91294 0.79309 0.89005 0.89004 0.81918 0.84472 0.84313 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.58 13.96 55.50 0.77 -23.80 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.56 27.74 -169.99 -4.71 13.85 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 7 C -0.31 -8.44 10.16 -14.93 -0.15 -8.60 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.58 -13.18 5.09 -10.96 -0.06 -13.24 16 10 C 0.45 9.85 7.86 -10.99 -0.09 9.76 16 11 O -0.56 -14.69 16.08 -14.12 -0.23 -14.92 16 12 C 0.06 1.01 5.96 36.00 0.21 1.23 16 13 O -0.33 -5.40 9.76 -47.58 -0.46 -5.86 16 14 C 0.53 7.70 7.94 34.23 0.27 7.97 16 15 O -0.49 -7.77 16.63 -19.32 -0.32 -8.09 16 16 C 0.05 0.58 6.99 -82.32 -0.58 0.01 16 17 C -0.10 -1.04 10.53 -39.14 -0.41 -1.46 16 18 C -0.11 -1.16 6.16 -106.93 -0.66 -1.82 16 19 C -0.05 -0.41 9.82 -39.49 -0.39 -0.80 16 20 C -0.06 -0.53 6.28 -39.90 -0.25 -0.78 16 21 Cl -0.07 -0.59 28.93 -51.86 -1.50 -2.09 16 22 C -0.08 -0.61 9.79 -39.49 -0.39 -1.00 16 23 C -0.11 -0.91 10.07 -39.42 -0.40 -1.31 16 24 C 0.12 1.21 7.25 -83.96 -0.61 0.60 16 25 N -0.56 -6.09 6.19 -7.37 -0.05 -6.14 16 26 H 0.43 4.36 8.96 -40.82 -0.37 4.00 16 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.37 7.41 5.76 -40.82 -0.24 7.17 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -32.32 328.35 -7.83 -40.15 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -2.69 Total: 10.27 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -3.53 Total: 4.93 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.67 Total: -43.18 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.01 Total: -28.87 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.71 Total: 13.85 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.32 -7.83 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.918 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds