Wall clock time and date at job start Tue Mar 31 2020 12:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86804 * 120.00207 * 2 1 4 4 H 1.48493 * 109.47250 * 274.99930 * 3 2 1 5 5 H 1.48509 * 109.46649 * 34.99723 * 3 2 1 6 6 H 1.48498 * 109.46878 * 154.99554 * 3 2 1 7 7 C 1.39065 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99460 * 213.32524 * 7 2 1 9 9 N 1.36797 * 120.00272 * 33.32852 * 7 2 1 10 10 C 1.46505 * 120.00140 * 7.82513 * 9 7 2 11 11 C 1.50697 * 109.46786 * 262.55868 * 10 9 7 12 12 O 1.20828 * 120.00276 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99756 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00496 * 187.81944 * 9 7 2 15 15 O 1.21703 * 119.99646 * 1.77663 * 14 9 7 16 16 C 1.46888 * 120.00584 * 181.77301 * 14 9 7 17 17 C 1.36014 * 125.44150 * 168.75269 * 16 14 9 18 18 C 1.41548 * 107.72958 * 180.02562 * 17 16 14 19 19 C 1.40138 * 133.35073 * 180.29568 * 18 17 16 20 20 C 1.36524 * 119.82057 * 180.19948 * 19 18 17 21 21 Cl 1.73604 * 119.70897 * 179.77549 * 20 19 18 22 22 C 1.39037 * 120.58804 * 359.49349 * 20 19 18 23 23 C 1.37697 * 120.63853 * 0.24021 * 22 20 19 24 24 C 1.39202 * 119.82859 * 0.02562 * 23 22 20 25 25 N 1.37567 * 133.15199 * 179.97438 * 24 23 22 26 26 H 0.97005 * 125.60992 * 359.97438 * 25 24 23 27 27 H 0.97002 * 119.99980 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47026 * 22.55710 * 10 9 7 29 29 H 1.08999 * 109.47275 * 142.55513 * 10 9 7 30 30 H 0.96704 * 116.99825 * 179.97438 * 13 11 10 31 31 H 1.07999 * 126.13734 * 0.06186 * 17 16 14 32 32 H 1.08002 * 120.08343 * 359.95302 * 19 18 17 33 33 H 1.08000 * 119.68459 * 180.25810 * 22 20 19 34 34 H 1.07996 * 120.08186 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3895 2.1074 -1.3947 5 1 1.5018 2.6199 0.8031 6 1 3.5939 1.4119 0.5918 7 6 2.0088 -1.2044 0.0005 8 1 2.9557 -1.2810 0.5145 9 7 1.4936 -2.2919 -0.6499 10 6 0.3008 -2.1470 -1.4882 11 6 -0.9182 -2.5558 -0.7022 12 8 -0.8026 -2.9295 0.4411 13 8 -2.1325 -2.5039 -1.2718 14 6 2.0832 -3.4969 -0.5197 15 8 3.0548 -3.6241 0.2021 16 6 1.5532 -4.6567 -1.2488 17 6 2.1739 -5.8604 -1.3742 18 6 1.3358 -6.6991 -2.1474 19 6 1.4450 -8.0245 -2.5892 20 6 0.4482 -8.5728 -3.3440 21 17 0.5892 -10.2132 -3.8947 22 6 -0.6815 -7.8311 -3.6707 23 6 -0.8137 -6.5288 -3.2434 24 6 0.1919 -5.9460 -2.4772 25 7 0.3450 -4.6988 -1.9175 26 1 -0.2905 -3.9688 -1.9821 27 1 -0.4850 0.8401 0.0004 28 1 0.2002 -1.1074 -1.8002 29 1 0.3958 -2.7829 -2.3683 30 1 -2.8844 -2.7765 -0.7282 31 1 3.1337 -6.1285 -0.9580 32 1 2.3172 -8.6092 -2.3367 33 1 -1.4631 -8.2808 -4.2650 34 1 -1.6952 -5.9611 -3.5020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:21 Heat of formation + Delta-G solvation = -53.991497 kcal Electronic energy + Delta-G solvation = -24842.345603 eV Core-core repulsion = 20960.412554 eV Total energy + Delta-G solvation = -3881.933049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.97143 -41.33244 -40.06377 -38.31331 -37.32713 -36.82751 -36.72451 -34.13502 -33.24818 -30.82276 -30.20631 -29.57889 -27.35188 -24.73974 -23.25854 -23.09200 -22.29283 -21.13234 -19.46730 -19.07781 -18.79559 -18.60091 -17.68319 -17.16771 -16.97568 -16.56502 -16.14573 -15.96205 -15.71720 -15.26045 -15.07232 -14.84297 -14.55201 -14.06718 -13.99586 -13.85495 -13.69464 -13.47554 -13.33425 -12.80217 -12.47258 -12.45091 -12.29461 -12.17647 -11.86329 -11.79054 -11.73283 -11.12606 -11.00379 -10.89732 -10.18337 -9.23911 -8.89700 -8.69175 -6.02524 -0.30778 0.37544 0.97564 1.17689 1.22906 1.40054 1.43410 1.55073 1.80795 1.98498 2.19787 2.32981 2.62802 2.71363 2.93616 3.50175 3.58475 3.73059 3.96509 4.13148 4.30337 4.33339 4.38364 4.48902 4.52669 4.80829 4.95214 5.13267 5.28155 5.33585 5.38726 5.58203 5.62185 5.74492 5.89025 6.16687 6.23440 6.86580 6.98661 7.11295 7.65260 8.38346 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.003603 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.633631 B = 7768.925304 C = 8511.578019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.013 3.987 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.360 4.360 8 H 0.090 0.910 9 N -0.420 5.420 10 C 0.110 3.890 11 C 0.477 3.523 12 O -0.531 6.531 13 O -0.509 6.509 14 C 0.490 3.510 15 O -0.605 6.605 16 C 0.033 3.967 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.059 4.059 20 C -0.063 4.063 21 Cl -0.067 7.067 22 C -0.079 4.079 23 C -0.112 4.112 24 C 0.090 3.910 25 N -0.584 5.584 26 H 0.419 0.581 27 H 0.285 0.715 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.423 0.577 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -10.006 -12.104 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.192 4.192 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.107 0.893 9 N -0.136 5.136 10 C -0.016 4.016 11 C 0.318 3.682 12 O -0.419 6.419 13 O -0.322 6.322 14 C 0.281 3.719 15 O -0.492 6.492 16 C -0.076 4.076 17 C -0.160 4.160 18 C -0.121 4.121 19 C -0.078 4.078 20 C -0.090 4.090 21 Cl -0.038 7.038 22 C -0.099 4.099 23 C -0.132 4.132 24 C -0.020 4.020 25 N -0.199 5.199 26 H 0.267 0.733 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.284 0.716 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.605 -9.841 -11.671 16.634 hybrid contribution -0.331 1.040 1.080 1.536 sum -6.936 -8.801 -10.591 15.418 Atomic orbital electron populations 1.70068 1.07307 1.30123 1.42793 1.26060 0.95834 1.02545 0.94770 0.84970 0.78280 0.76019 0.79371 1.17935 1.20172 1.19958 1.19725 1.05620 0.87408 1.35852 0.89265 1.43566 1.22132 1.07441 1.40452 1.21493 0.81293 1.07063 0.91785 1.23779 0.85341 0.72666 0.86447 1.90696 1.86930 1.44195 1.20037 1.84447 1.17144 1.81185 1.49425 1.17384 0.87125 0.81787 0.85557 1.90631 1.30954 1.83919 1.43654 1.20304 0.88653 0.97116 1.01563 1.20909 1.01255 0.91036 1.02819 1.18113 0.95564 0.94885 1.03570 1.20333 0.99113 0.92331 0.96060 1.20338 0.97813 0.87415 1.03481 1.98355 1.98044 1.18781 1.88661 1.21029 0.96927 0.92402 0.99522 1.20351 0.98085 0.95509 0.99269 1.18915 0.98044 0.85312 0.99685 1.43324 1.17898 1.13141 1.45500 0.73273 0.90469 0.84101 0.86473 0.71586 0.82812 0.83617 0.81449 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.88 10.12 21.68 0.22 -41.66 16 2 C 0.01 0.66 4.65 84.96 0.40 1.05 16 3 Si 0.99 38.85 29.66 68.60 2.03 40.88 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.36 -19.69 9.35 84.12 0.79 -18.91 16 8 H 0.09 5.31 7.37 -2.91 -0.02 5.29 16 9 N -0.42 -21.27 2.20 -643.91 -1.41 -22.68 16 10 C 0.11 4.52 4.75 85.63 0.41 4.92 16 11 C 0.48 19.15 4.67 71.24 0.33 19.48 16 12 O -0.53 -26.39 17.00 21.96 0.37 -26.02 16 13 O -0.51 -14.64 13.36 -51.44 -0.69 -15.33 16 14 C 0.49 25.41 7.31 86.51 0.63 26.04 16 15 O -0.61 -35.65 16.46 -4.36 -0.07 -35.72 16 16 C 0.03 1.41 6.55 39.90 0.26 1.67 16 17 C -0.13 -5.02 10.55 22.57 0.24 -4.78 16 18 C -0.12 -3.66 6.16 -21.36 -0.13 -3.79 16 19 C -0.06 -1.49 9.82 22.33 0.22 -1.27 16 20 C -0.06 -1.36 6.28 22.06 0.14 -1.22 16 21 Cl -0.07 -1.27 28.93 -2.72 -0.08 -1.34 16 22 C -0.08 -1.48 9.79 22.33 0.22 -1.26 16 23 C -0.11 -2.40 10.07 22.37 0.23 -2.17 16 24 C 0.09 2.69 7.25 39.12 0.28 2.97 16 25 N -0.58 -20.20 4.84 -177.17 -0.86 -21.05 16 26 H 0.42 13.59 3.44 -92.70 -0.32 13.27 16 27 H 0.29 12.67 8.31 -92.71 -0.77 11.90 16 28 H 0.14 5.84 6.00 -2.39 -0.01 5.82 16 29 H 0.12 4.02 5.18 -2.39 -0.01 4.00 16 30 H 0.42 8.54 9.10 -74.05 -0.67 7.87 16 31 H 0.15 5.60 8.06 -2.91 -0.02 5.58 16 32 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -71.39 312.73 3.74 -67.64 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.22 Total: 32.55 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 4.01 Total: 22.73 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.05 Total: -85.40 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -0.39 Total: -77.07 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -71.39 3.74 -67.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.653 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds