Wall clock time and date at job start Tue Mar 31 2020 13:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 S 1.81400 * 109.46829 * 115.60533 * 3 2 1 5 5 C 1.76196 * 102.99988 * 179.97438 * 4 3 2 6 6 C 1.38979 * 120.07969 * 180.02562 * 5 4 3 7 7 C 1.38085 * 119.91784 * 180.02562 * 6 5 4 8 8 C 1.38298 * 120.08130 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.91928 * 180.02562 * 8 7 6 10 10 O 1.45206 * 109.47021 * 89.99968 * 9 8 7 11 11 C 1.34224 * 117.00077 * 180.02562 * 10 9 8 12 12 O 1.20833 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00302 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47427 * 180.02562 * 13 11 10 15 15 C 1.76202 * 100.00120 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38794 * 119.99878 * 179.97438 * 15 14 13 18 18 N 1.31637 * 120.00238 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00119 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46776 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47001 * 119.99947 * 19 17 15 22 22 H 1.48497 * 109.47276 * 240.00099 * 19 17 15 23 23 C 1.38306 * 120.16030 * 0.27010 * 8 7 6 24 24 C 1.38080 * 120.07826 * 359.46211 * 23 8 7 25 25 H 4.62826 * 6.06221 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.47818 * 355.60318 * 3 2 1 27 27 H 1.09001 * 109.46805 * 235.59545 * 3 2 1 28 28 H 1.08005 * 120.03952 * 359.97438 * 6 5 4 29 29 H 1.08001 * 119.95566 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.47247 * 330.00017 * 9 8 7 31 31 H 1.09001 * 109.47358 * 209.99444 * 9 8 7 32 32 H 1.09009 * 109.46972 * 299.99362 * 13 11 10 33 33 H 1.08995 * 109.47473 * 59.99636 * 13 11 10 34 34 H 0.97003 * 119.99824 * 179.97438 * 18 17 15 35 35 H 1.07998 * 119.95959 * 179.72792 * 23 8 7 36 36 H 1.07998 * 120.03744 * 180.27274 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2503 0.7401 -1.5423 5 6 5.0011 0.6558 -1.3630 6 6 5.8285 1.1393 -2.3695 7 6 7.2001 1.0711 -2.2257 8 6 7.7508 0.5229 -1.0816 9 6 9.2482 0.4508 -0.9283 10 8 9.7279 1.6620 -0.2870 11 6 11.0500 1.7572 -0.0760 12 8 11.7823 0.8580 -0.4154 13 6 11.6211 2.9850 0.5853 14 16 13.4174 2.8139 0.7268 15 6 13.8098 4.3429 1.5098 16 1 13.0241 5.0442 1.7491 17 6 15.1283 4.6455 1.8198 18 7 16.0859 3.7904 1.5286 19 14 15.5443 6.2661 2.6505 20 1 14.2984 7.0441 2.8695 21 1 16.1968 5.9993 3.9575 22 1 16.4680 7.0430 1.7855 23 6 6.9305 0.0361 -0.0801 24 6 5.5580 0.1060 -0.2146 25 1 -1.0501 0.0001 0.0004 26 1 3.0100 -1.0237 0.0788 27 1 3.0091 0.5815 0.8479 28 1 5.3992 1.5671 -3.2635 29 1 7.8437 1.4463 -3.0077 30 1 9.7098 0.3526 -1.9108 31 1 9.5096 -0.4123 -0.3161 32 1 11.3865 3.8637 -0.0156 33 1 11.1872 3.0978 1.5788 34 1 17.0075 4.0022 1.7450 35 1 7.3639 -0.3953 0.8100 36 1 4.9181 -0.2703 0.5698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788418445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:14 Heat of formation + Delta-G solvation = -8.981880 kcal Electronic energy + Delta-G solvation = -19843.665865 eV Core-core repulsion = 16512.021500 eV Total energy + Delta-G solvation = -3331.644364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.048 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23032 -39.29244 -36.18056 -34.65546 -32.58700 -32.49560 -31.46333 -29.78425 -29.10248 -26.63394 -25.53990 -23.10274 -22.03630 -20.96132 -19.25593 -17.96649 -17.76546 -17.19257 -16.63792 -16.48041 -15.68582 -15.39455 -15.11206 -15.08750 -14.85752 -14.62554 -14.15850 -13.82806 -13.65759 -13.35104 -13.31467 -12.73513 -12.57635 -12.07922 -11.93110 -11.54110 -11.10500 -11.09401 -11.07170 -10.97284 -10.81821 -10.52084 -10.48850 -10.21152 -9.92871 -9.85919 -9.33716 -9.13443 -8.36969 -7.83528 -6.61645 -6.28646 -4.01306 0.68036 0.68597 1.02492 1.82047 2.21907 2.59672 2.62854 2.63527 3.18966 3.19694 3.27497 3.35922 3.63646 3.65935 4.13657 4.39394 4.48469 4.52491 4.54207 4.70343 4.91825 4.98959 5.07412 5.14607 5.23796 5.28803 5.33545 5.40028 5.59799 5.66029 5.76783 5.84534 5.90898 6.07237 6.24292 6.49800 6.64866 6.96501 7.54746 8.14105 8.29553 9.17143 10.78903 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.001836 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.132049 B =15249.574240 C =15788.848338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.189 4.189 3 C 0.000 4.000 4 S -0.093 6.093 5 C -0.082 4.082 6 C -0.101 4.101 7 C -0.074 4.074 8 C -0.092 4.092 9 C 0.106 3.894 10 O -0.356 6.356 11 C 0.479 3.521 12 O -0.488 6.488 13 C -0.129 4.129 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.922 3.078 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.073 4.073 24 C -0.137 4.137 25 H 0.226 0.774 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.269 0.731 35 H 0.131 0.869 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.157 -8.108 -4.861 29.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.190 4.190 3 C -0.146 4.146 4 S 0.153 5.847 5 C -0.195 4.195 6 C -0.124 4.124 7 C -0.094 4.094 8 C -0.095 4.095 9 C 0.032 3.968 10 O -0.274 6.274 11 C 0.320 3.680 12 O -0.373 6.373 13 C -0.276 4.276 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.095 0.905 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.748 3.252 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.093 4.093 24 C -0.161 4.161 25 H 0.242 0.758 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.807 -8.874 -6.193 29.838 hybrid contribution 0.129 1.405 1.927 2.388 sum -27.677 -7.469 -4.266 28.983 Atomic orbital electron populations 1.24965 0.95778 0.99263 0.98044 1.21656 0.92852 1.01991 1.02506 1.20427 0.89212 1.05293 0.99706 1.85811 0.97476 1.77016 1.24380 1.21793 0.96580 1.03002 0.98132 1.20722 0.92765 1.00664 0.98269 1.21067 0.94413 0.96499 0.97401 1.19624 0.93956 1.00715 0.95208 1.21736 0.89751 0.86485 0.98823 1.86594 1.26040 1.41867 1.72913 1.23338 0.79686 0.88698 0.76238 1.90673 1.59653 1.39904 1.47110 1.23305 1.05539 0.95632 1.03160 1.85411 0.91102 1.27397 1.79352 1.22888 0.95857 1.03948 1.45683 0.90515 1.25005 0.95117 0.98005 0.95385 1.70025 1.00574 1.35043 1.44594 0.86069 0.78566 0.81687 0.78903 1.19498 1.20508 1.20492 1.21014 0.92675 0.97605 0.98009 1.21103 0.95726 1.02315 0.96947 0.75763 0.86992 0.86928 0.85089 0.84875 0.90143 0.90209 0.87885 0.87908 0.92118 0.85109 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 19.25 29.55 0.57 -0.36 16 2 C -0.19 -1.38 13.35 -37.12 -0.50 -1.87 16 3 C 0.00 0.00 4.82 34.37 0.17 0.17 16 4 S -0.09 -0.78 21.88 -107.50 -2.35 -3.14 16 5 C -0.08 -0.76 6.11 -39.04 -0.24 -1.00 16 6 C -0.10 -0.94 9.79 -39.36 -0.39 -1.33 16 7 C -0.07 -0.73 9.69 -39.62 -0.38 -1.11 16 8 C -0.09 -1.00 5.52 -104.58 -0.58 -1.58 16 9 C 0.11 1.33 5.59 36.01 0.20 1.53 16 10 O -0.36 -5.60 10.20 -39.24 -0.40 -6.00 16 11 C 0.48 9.06 7.98 36.00 0.29 9.35 16 12 O -0.49 -10.52 15.61 -18.76 -0.29 -10.81 16 13 C -0.13 -2.60 6.27 36.00 0.23 -2.38 16 14 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 15 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 16 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 19 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.07 -0.71 9.69 -39.61 -0.38 -1.09 16 24 C -0.14 -1.19 9.36 -39.37 -0.37 -1.56 16 25 H 0.23 0.49 7.80 -54.09 -0.42 0.06 16 26 H 0.11 0.56 7.75 -51.93 -0.40 0.16 16 27 H 0.11 0.60 7.75 -51.92 -0.40 0.20 16 28 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 33 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.13 0.78 5.88 -52.49 -0.31 0.48 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -33.50 356.68 -9.39 -42.89 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.03 Total: -1.76 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.19 Total: -13.93 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.73 Total: -24.93 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.69 Total: -16.81 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -4.56 Total: -6.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.50 -9.39 -42.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788418445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.909 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds