Wall clock time and date at job start Tue Mar 31 2020 13:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 S 1.81400 * 109.46829 * 115.60533 * 3 2 1 5 5 C 1.76196 * 102.99988 * 179.97438 * 4 3 2 6 6 C 1.38979 * 120.07969 * 180.02562 * 5 4 3 7 7 C 1.38085 * 119.91784 * 180.02562 * 6 5 4 8 8 C 1.38298 * 120.08130 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.91928 * 180.02562 * 8 7 6 10 10 O 1.45206 * 109.47021 * 89.99968 * 9 8 7 11 11 C 1.34224 * 117.00077 * 180.02562 * 10 9 8 12 12 O 1.20833 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00302 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47427 * 180.02562 * 13 11 10 15 15 C 1.76202 * 100.00120 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99931 * 0.02562 * 15 14 13 17 17 C 1.38794 * 119.99878 * 179.97438 * 15 14 13 18 18 N 1.31637 * 120.00238 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00119 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46776 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47001 * 119.99947 * 19 17 15 22 22 H 1.48497 * 109.47276 * 240.00099 * 19 17 15 23 23 C 1.38306 * 120.16030 * 0.27010 * 8 7 6 24 24 C 1.38080 * 120.07826 * 359.46211 * 23 8 7 25 25 H 4.62826 * 6.06221 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.47818 * 355.60318 * 3 2 1 27 27 H 1.09001 * 109.46805 * 235.59545 * 3 2 1 28 28 H 1.08005 * 120.03952 * 359.97438 * 6 5 4 29 29 H 1.08001 * 119.95566 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.47247 * 330.00017 * 9 8 7 31 31 H 1.09001 * 109.47358 * 209.99444 * 9 8 7 32 32 H 1.09009 * 109.46972 * 299.99362 * 13 11 10 33 33 H 1.08995 * 109.47473 * 59.99636 * 13 11 10 34 34 H 0.97003 * 119.99824 * 179.97438 * 18 17 15 35 35 H 1.07998 * 119.95959 * 179.72792 * 23 8 7 36 36 H 1.07998 * 120.03744 * 180.27274 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2503 0.7401 -1.5423 5 6 5.0011 0.6558 -1.3630 6 6 5.8285 1.1393 -2.3695 7 6 7.2001 1.0711 -2.2257 8 6 7.7508 0.5229 -1.0816 9 6 9.2482 0.4508 -0.9283 10 8 9.7279 1.6620 -0.2870 11 6 11.0500 1.7572 -0.0760 12 8 11.7823 0.8580 -0.4154 13 6 11.6211 2.9850 0.5853 14 16 13.4174 2.8139 0.7268 15 6 13.8098 4.3429 1.5098 16 1 13.0241 5.0442 1.7491 17 6 15.1283 4.6455 1.8198 18 7 16.0859 3.7904 1.5286 19 14 15.5443 6.2661 2.6505 20 1 14.2984 7.0441 2.8695 21 1 16.1968 5.9993 3.9575 22 1 16.4680 7.0430 1.7855 23 6 6.9305 0.0361 -0.0801 24 6 5.5580 0.1060 -0.2146 25 1 -1.0501 0.0001 0.0004 26 1 3.0100 -1.0237 0.0788 27 1 3.0091 0.5815 0.8479 28 1 5.3992 1.5671 -3.2635 29 1 7.8437 1.4463 -3.0077 30 1 9.7098 0.3526 -1.9108 31 1 9.5096 -0.4123 -0.3161 32 1 11.3865 3.8637 -0.0156 33 1 11.1872 3.0978 1.5788 34 1 17.0075 4.0022 1.7450 35 1 7.3639 -0.3953 0.8100 36 1 4.9181 -0.2703 0.5698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788418445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:13 Heat of formation + Delta-G solvation = -25.762704 kcal Electronic energy + Delta-G solvation = -19844.393536 eV Core-core repulsion = 16512.021500 eV Total energy + Delta-G solvation = -3332.372035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55463 -40.15610 -37.56067 -35.10552 -34.60881 -33.47136 -32.15695 -31.30978 -29.60489 -27.83257 -27.44255 -23.80139 -22.98894 -22.26926 -19.91271 -19.75892 -18.70356 -18.33958 -17.74128 -17.64852 -16.89785 -16.65009 -16.33086 -16.02638 -15.84080 -15.57019 -15.28099 -14.78190 -14.64448 -14.52256 -14.26503 -14.13644 -13.67734 -13.52406 -13.17665 -12.91887 -12.82292 -12.61902 -12.29997 -11.79252 -11.73614 -11.72206 -11.57779 -11.44995 -11.17327 -11.02667 -10.73301 -10.37353 -10.04362 -8.73183 -8.50472 -8.37534 -6.17044 -0.10303 0.10814 0.31827 1.07685 1.12474 1.20589 1.42098 1.42252 1.56695 1.76240 1.90640 2.12970 2.23775 2.66159 2.97701 3.24467 3.27981 3.57324 3.67656 3.87670 3.97186 4.07152 4.10225 4.18584 4.25571 4.29232 4.40137 4.45541 4.52176 4.65416 4.96112 4.97647 5.12193 5.16816 5.28353 5.41779 5.48013 5.78277 6.18580 6.52677 6.68443 7.04561 8.71911 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.001836 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.132049 B =15249.574240 C =15788.848338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.231 4.231 3 C 0.005 3.995 4 S -0.113 6.113 5 C -0.085 4.085 6 C -0.110 4.110 7 C -0.079 4.079 8 C -0.110 4.110 9 C 0.104 3.896 10 O -0.348 6.348 11 C 0.490 3.510 12 O -0.519 6.519 13 C -0.109 4.109 14 S -0.136 6.136 15 C -0.548 4.548 16 H 0.086 0.914 17 C 0.017 3.983 18 N -0.910 5.910 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.078 4.078 24 C -0.138 4.138 25 H 0.255 0.745 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.273 0.727 35 H 0.143 0.857 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.506 -7.290 -4.119 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.232 4.232 3 C -0.141 4.141 4 S 0.134 5.866 5 C -0.197 4.197 6 C -0.133 4.133 7 C -0.099 4.099 8 C -0.112 4.112 9 C 0.031 3.969 10 O -0.266 6.266 11 C 0.332 3.668 12 O -0.408 6.408 13 C -0.258 4.258 14 S 0.091 5.909 15 C -0.696 4.696 16 H 0.104 0.896 17 C -0.188 4.188 18 N -0.546 5.546 19 Si 0.821 3.179 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.098 4.098 24 C -0.161 4.161 25 H 0.272 0.728 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.161 0.839 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -30.193 -8.059 -5.461 31.724 hybrid contribution 0.598 1.064 1.647 2.050 sum -29.595 -6.995 -3.814 30.648 Atomic orbital electron populations 1.25839 0.96706 0.97784 0.96332 1.22097 0.93667 1.03436 1.04031 1.20497 0.89109 1.05994 0.98482 1.85876 0.97051 1.77327 1.26388 1.21975 0.97057 1.02478 0.98237 1.20919 0.92644 1.00809 0.98919 1.21214 0.94915 0.96332 0.97426 1.19561 0.92772 1.02567 0.96329 1.21983 0.91036 0.85180 0.98740 1.86565 1.23768 1.43527 1.72699 1.22957 0.80557 0.87691 0.75573 1.90668 1.60704 1.40861 1.48549 1.23099 1.00673 0.97129 1.04866 1.85509 0.97453 1.28254 1.79717 1.23234 0.96553 1.04119 1.45686 0.89635 1.26102 0.94877 1.01995 0.95858 1.70171 1.01113 1.37385 1.45927 0.84893 0.78688 0.76633 0.77669 1.18104 1.19873 1.19878 1.21217 0.93118 0.97318 0.98109 1.21375 0.95635 1.01774 0.97355 0.72850 0.85656 0.85914 0.83962 0.84004 0.89841 0.89735 0.86118 0.86073 0.91840 0.83928 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 19.25 74.32 1.43 0.03 16 2 C -0.23 -2.99 13.35 31.13 0.42 -2.58 16 3 C 0.01 0.06 4.82 70.18 0.34 0.40 16 4 S -0.11 -1.77 21.88 -56.49 -1.24 -3.01 16 5 C -0.08 -1.45 6.11 22.62 0.14 -1.31 16 6 C -0.11 -1.93 9.79 22.41 0.22 -1.71 16 7 C -0.08 -1.49 9.69 22.25 0.22 -1.27 16 8 C -0.11 -2.26 5.52 -19.83 -0.11 -2.37 16 9 C 0.10 2.54 5.59 71.24 0.40 2.93 16 10 O -0.35 -10.58 10.20 -51.35 -0.52 -11.11 16 11 C 0.49 18.30 7.98 71.23 0.57 18.87 16 12 O -0.52 -22.62 15.61 21.94 0.34 -22.27 16 13 C -0.11 -4.35 6.27 71.23 0.45 -3.90 16 14 S -0.14 -7.35 20.57 -56.49 -1.16 -8.51 16 15 C -0.55 -30.67 9.50 67.95 0.65 -30.02 16 16 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 17 C 0.02 0.94 5.49 84.86 0.47 1.40 16 18 N -0.91 -54.62 13.22 21.65 0.29 -54.34 16 19 Si 1.00 42.85 29.55 68.60 2.03 44.87 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 C -0.08 -1.38 9.69 22.25 0.22 -1.17 16 24 C -0.14 -2.13 9.36 22.41 0.21 -1.92 16 25 H 0.26 0.36 7.80 -4.41 -0.03 0.32 16 26 H 0.13 1.01 7.75 -2.39 -0.02 0.99 16 27 H 0.12 1.07 7.75 -2.39 -0.02 1.05 16 28 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 31 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 32 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 33 H 0.12 4.39 8.14 -2.40 -0.02 4.37 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.15 1.50 5.88 -2.91 -0.02 1.48 16 Total: -1.00 -72.68 356.68 6.42 -66.25 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.09 Total: 10.72 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 5.60 Total: -22.61 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.29 Total: -54.34 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.18 Total: -33.38 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -2.40 Total: -11.52 kcal Total: -72.68 6.42 -66.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788418445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.492 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds