Wall clock time and date at job start Tue Mar 31 2020 13:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48498 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99497 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99854 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46976 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47312 * 180.02562 * 12 11 10 14 14 C 1.34227 * 116.99869 * 179.97438 * 13 12 11 15 15 O 1.20819 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99646 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46930 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.38434 * 55.21226 * 17 16 14 19 19 C 1.52637 * 109.38234 * 175.00128 * 17 16 14 20 20 S 1.81176 * 109.99274 * 187.00799 * 19 17 16 21 21 C 1.81169 * 103.31251 * 297.38495 * 20 19 17 22 22 C 1.52637 * 109.99299 * 62.61522 * 21 20 19 23 23 S 1.81169 * 109.38191 * 295.53121 * 17 16 14 24 24 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 26 26 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 27 27 H 1.09001 * 109.47131 * 299.99123 * 11 10 9 28 28 H 1.08996 * 109.47558 * 60.00200 * 11 10 9 29 29 H 1.09005 * 109.46779 * 299.99512 * 12 11 10 30 30 H 1.08996 * 109.47421 * 59.98799 * 12 11 10 31 31 H 1.09004 * 109.47197 * 299.99891 * 16 14 13 32 32 H 1.09003 * 109.47486 * 60.00041 * 16 14 13 33 33 H 1.09004 * 109.38641 * 307.16643 * 19 17 16 34 34 H 1.09002 * 109.38506 * 66.84709 * 19 17 16 35 35 H 1.08997 * 109.38486 * 182.77129 * 21 20 19 36 36 H 1.08996 * 109.38648 * 302.56125 * 21 20 19 37 37 H 1.09002 * 109.38506 * 53.30931 * 22 21 20 38 38 H 1.09001 * 109.38663 * 173.09599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9791 -5.3243 -0.0001 12 6 3.1511 -6.3079 0.0005 13 8 2.6419 -7.6677 -0.0007 14 6 3.5483 -8.6577 -0.0008 15 8 4.7279 -8.3968 0.0005 16 6 3.0943 -10.0947 -0.0015 17 6 4.3162 -11.0155 -0.0009 18 1 4.9576 -10.7650 0.8440 19 6 3.8574 -12.4660 0.1239 20 16 5.2913 -13.5534 0.3336 21 6 6.2158 -13.3266 -1.2079 22 6 6.6746 -11.8761 -1.3327 23 16 5.2407 -10.7887 -1.5424 24 1 -0.4850 0.8401 -0.0004 25 1 3.1243 -3.7315 -0.8895 26 1 3.1244 -3.7315 0.8905 27 1 1.3703 -5.4847 0.8897 28 1 1.3708 -5.4841 -0.8903 29 1 3.7603 -6.1477 -0.8891 30 1 3.7593 -6.1479 0.8908 31 1 2.4947 -10.2868 0.8883 32 1 2.4951 -10.2861 -0.8917 33 1 3.1995 -12.5643 0.9874 34 1 3.3147 -12.7525 -0.7769 35 1 7.0863 -13.9825 -1.2075 36 1 5.5754 -13.5758 -2.0539 37 1 7.2173 -11.5896 -0.4319 38 1 7.3310 -11.7774 -2.1973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805513931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:22 Heat of formation + Delta-G solvation = -106.198343 kcal Electronic energy + Delta-G solvation = -19384.965565 eV Core-core repulsion = 16184.549530 eV Total energy + Delta-G solvation = -3200.416035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54110 -37.02822 -35.34421 -33.59751 -33.44479 -32.45011 -29.24000 -26.46945 -25.44467 -24.40156 -23.20446 -21.36493 -20.92317 -17.99896 -17.71216 -17.39293 -17.22300 -16.61589 -16.31435 -15.77108 -14.82791 -14.81087 -14.68887 -14.42254 -14.31932 -13.89679 -13.71022 -13.50843 -13.08967 -13.00411 -12.60892 -12.43191 -12.10203 -11.98209 -11.36405 -11.32493 -11.14893 -10.99404 -10.90292 -10.71880 -10.70567 -10.54087 -10.28227 -10.10616 -9.63071 -9.09166 -8.44042 -8.36050 -7.99500 -6.57205 -6.25670 -3.96570 0.99438 1.14086 1.77138 2.03740 2.12953 2.52389 3.20085 3.21623 3.29225 3.52833 3.93987 4.06583 4.12315 4.19273 4.42485 4.43500 4.64939 4.72949 4.76398 4.94649 4.99650 5.01575 5.10005 5.12879 5.19144 5.19880 5.29246 5.38632 5.49180 5.77365 5.89468 6.16155 6.44499 6.44824 6.67161 7.58790 7.68489 8.34464 9.20925 10.82534 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.043019 B = 0.001813 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.713628 B =15441.888003 C =15833.303332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.074 0.926 9 S -0.125 6.125 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.487 6.487 16 C -0.095 4.095 17 C -0.051 4.051 18 H 0.110 0.890 19 C -0.086 4.086 20 S -0.247 6.247 21 C -0.090 4.090 22 C -0.095 4.095 23 S -0.220 6.220 24 H 0.267 0.733 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -29.162 -1.175 30.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.273 6.273 14 C 0.295 3.705 15 O -0.374 6.374 16 C -0.136 4.136 17 C -0.182 4.182 18 H 0.128 0.872 19 C -0.236 4.236 20 S -0.018 6.018 21 C -0.240 4.240 22 C -0.245 4.245 23 S 0.008 5.992 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.452 -29.136 -1.181 30.360 hybrid contribution 2.030 1.395 -0.011 2.464 sum 10.482 -27.741 -1.192 29.679 Atomic orbital electron populations 1.70030 1.05923 1.27299 1.47224 1.25027 0.95108 0.99150 0.94541 0.86090 0.79660 0.81740 0.77900 1.19573 1.20538 1.20545 1.22741 0.94630 0.90653 1.58544 0.90780 1.84649 1.08839 0.99277 1.96876 1.23179 1.03409 0.96353 1.03341 1.21283 0.96467 0.91591 1.04262 1.23264 0.97708 0.76498 1.02606 1.86456 1.40251 1.16963 1.83629 1.23257 0.85022 0.88606 0.73661 1.90733 1.18121 1.84692 1.43819 1.21186 0.97677 0.87562 1.07147 1.23189 0.98879 0.95726 1.00369 0.87160 1.23630 0.98306 0.93904 1.07749 1.86907 1.27321 1.60019 1.27567 1.23598 1.03161 0.99012 0.98233 1.23579 0.98872 0.94558 1.07487 1.87092 1.27081 1.60659 1.24403 0.92303 0.91731 0.91747 0.90397 0.90366 0.91111 0.91189 0.85906 0.86614 0.86153 0.88068 0.86560 0.88432 0.88390 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.79 9.50 30.94 0.29 -14.50 16 8 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 9 S -0.12 -3.23 21.44 -107.50 -2.30 -5.54 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 12 C 0.07 1.07 5.47 37.16 0.20 1.27 16 13 O -0.36 -4.72 10.22 -39.25 -0.40 -5.12 16 14 C 0.45 5.40 7.66 36.00 0.28 5.67 16 15 O -0.49 -7.11 14.50 -18.74 -0.27 -7.38 16 16 C -0.10 -0.70 5.27 -27.88 -0.15 -0.85 16 17 C -0.05 -0.38 2.03 -26.92 -0.05 -0.44 16 18 H 0.11 0.98 7.96 -51.92 -0.41 0.57 16 19 C -0.09 -0.48 5.53 36.97 0.20 -0.27 16 20 S -0.25 -1.71 22.05 -107.50 -2.37 -4.08 16 21 C -0.09 -0.48 6.25 36.97 0.23 -0.25 16 22 C -0.09 -0.63 6.25 36.97 0.23 -0.39 16 23 S -0.22 -2.06 19.80 -107.50 -2.13 -4.18 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 26 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.12 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.12 0.48 8.13 -51.92 -0.42 0.06 16 34 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.12 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.12 0.62 8.14 -51.91 -0.42 0.20 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -33.05 354.87 -11.09 -44.14 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.87 Total: -2.90 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 1.20 Total: -11.65 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.73 Total: -25.11 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.67 Total: -12.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -6.80 Total: -13.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.05 -11.09 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805513931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.062 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds