Wall clock time and date at job start Tue Mar 31 2020 13:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99871 * 3 2 1 5 5 H 1.48498 * 109.47249 * 29.99738 * 3 2 1 6 6 H 1.48498 * 109.47213 * 150.00045 * 3 2 1 7 7 C 1.38815 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.91430 * 322.54457 * 10 9 7 12 12 C 1.55448 * 111.11836 * 198.55593 * 10 9 7 13 13 C 1.54321 * 102.96961 * 206.45988 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.34780 * 125.64285 * 181.07596 * 14 13 12 16 16 O 1.21701 * 119.99332 * 179.97438 * 15 14 13 17 17 C 1.46685 * 120.00197 * 359.97438 * 15 14 13 18 18 C 1.34400 * 126.62828 * 179.70817 * 17 15 14 19 19 C 1.46381 * 118.08853 * 179.78518 * 18 17 15 20 20 C 1.38761 * 135.98317 * 180.16555 * 19 18 17 21 21 S 1.69815 * 111.84936 * 180.33935 * 20 19 18 22 22 C 1.75138 * 92.63021 * 359.97438 * 21 20 19 23 23 C 1.34261 * 110.72499 * 0.02562 * 22 21 20 24 24 S 1.77061 * 126.63259 * 0.02562 * 17 15 14 25 25 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 26 26 H 0.96993 * 120.00247 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00105 * 359.97438 * 9 7 2 28 28 H 1.08998 * 110.70855 * 88.08792 * 12 10 9 29 29 H 1.08997 * 110.70436 * 324.83540 * 12 10 9 30 30 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 31 31 H 1.08997 * 110.01327 * 141.67909 * 13 12 10 32 32 H 1.07999 * 120.96002 * 359.97438 * 18 17 15 33 33 H 1.08001 * 124.07569 * 0.29313 * 20 19 18 34 34 H 1.07995 * 124.63823 * 179.97438 * 22 21 20 35 35 H 1.09002 * 110.36926 * 94.70918 * 25 14 13 36 36 H 1.08995 * 110.36556 * 216.92202 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.6065 -3.2121 0.6199 12 6 5.5825 -2.2686 0.4631 13 6 6.3249 -3.4343 -0.2236 14 7 5.5076 -3.8568 -1.3705 15 6 5.8020 -4.8644 -2.2159 16 8 5.0486 -5.1272 -3.1349 17 6 7.0303 -5.6440 -2.0284 18 6 7.4495 -6.6738 -2.7835 19 6 8.7149 -7.3184 -2.4285 20 6 9.4749 -8.3669 -2.9270 21 16 10.8837 -8.6169 -2.0124 22 6 10.5003 -7.3072 -0.9146 23 6 9.3405 -6.7241 -1.2573 24 16 8.2432 -5.4155 -0.7589 25 6 4.3129 -2.9962 -1.4423 26 1 -0.4850 0.8400 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 5.6601 -2.3475 1.5475 29 1 5.9668 -1.3092 0.1168 30 1 6.4401 -4.2631 0.4749 31 1 7.3038 -3.1015 -0.5686 32 1 6.8711 -7.0139 -3.6298 33 1 9.2029 -8.9537 -3.7919 34 1 11.1126 -7.0099 -0.0761 35 1 4.4838 -2.1662 -2.1278 36 1 3.4461 -3.5763 -1.7588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969383593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:08 Heat of formation + Delta-G solvation = 27.062851 kcal Electronic energy + Delta-G solvation = -21400.975067 eV Core-core repulsion = 18103.186470 eV Total energy + Delta-G solvation = -3297.788596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22430 -39.34520 -38.62932 -36.11605 -34.32257 -33.55317 -31.51421 -30.24918 -29.71471 -26.87758 -25.27622 -24.16145 -23.27767 -21.92481 -21.01311 -19.95377 -19.72425 -18.94177 -18.38495 -17.62700 -17.23495 -16.49296 -16.43791 -15.72342 -15.59048 -15.32269 -14.79545 -14.77511 -14.66581 -14.45510 -14.10061 -13.95029 -13.82967 -13.51064 -13.06534 -12.99917 -12.67098 -12.32161 -12.23877 -12.21792 -12.11129 -11.84330 -11.64850 -11.37571 -11.30278 -11.04756 -10.77615 -9.91110 -9.40542 -9.18732 -8.49715 -8.03564 -5.40689 -0.86731 -0.06588 0.33548 0.56706 0.84908 1.32511 1.39224 1.39982 1.44543 1.51292 1.73460 2.01077 2.48758 3.17472 3.28583 3.42015 3.55248 3.72653 3.85333 4.00570 4.12285 4.26735 4.27260 4.41610 4.46315 4.56632 4.63809 4.76327 4.77230 4.89821 4.94359 5.06404 5.08210 5.12612 5.27349 5.74827 6.19491 6.28796 6.82433 7.04725 7.76487 7.97705 9.17493 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.037933 B = 0.002559 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.958705 B =10940.048787 C =11423.998115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.958 3.042 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.239 1.239 7 C -0.240 4.240 8 H 0.054 0.946 9 N -0.735 5.735 10 C 0.170 3.830 11 H 0.065 0.935 12 C -0.122 4.122 13 C 0.093 3.907 14 N -0.605 5.605 15 C 0.599 3.401 16 O -0.577 6.577 17 C -0.218 4.218 18 C -0.023 4.023 19 C -0.158 4.158 20 C -0.222 4.222 21 S 0.350 5.650 22 C -0.216 4.216 23 C -0.169 4.169 24 S 0.104 5.896 25 C 0.092 3.908 26 H 0.259 0.741 27 H 0.373 0.627 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.192 0.808 34 H 0.196 0.804 35 H 0.063 0.937 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.149 -17.182 -0.387 35.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.371 4.371 8 H 0.072 0.928 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.161 4.161 13 C -0.030 4.030 14 N -0.336 5.336 15 C 0.388 3.612 16 O -0.460 6.460 17 C -0.337 4.337 18 C -0.058 4.058 19 C -0.175 4.175 20 C -0.363 4.363 21 S 0.619 5.381 22 C -0.361 4.361 23 C -0.292 4.292 24 S 0.360 5.640 25 C -0.034 4.034 26 H 0.068 0.932 27 H 0.207 0.793 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.160 0.840 33 H 0.209 0.791 34 H 0.213 0.787 35 H 0.081 0.919 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 31.834 -17.525 0.109 36.340 hybrid contribution -2.107 1.100 -1.572 2.849 sum 29.728 -16.425 -1.463 33.995 Atomic orbital electron populations 1.69895 1.07390 1.26895 1.59029 1.25582 0.96140 1.01612 1.02055 0.85373 0.79090 0.79063 0.78027 1.20812 1.22326 1.16338 1.18987 0.82459 0.93468 1.42142 0.92809 1.42514 1.02463 1.03308 1.89443 1.21455 0.92628 0.87993 0.91938 0.91736 1.22923 0.92437 0.98175 1.02516 1.22344 0.94881 0.98534 0.87236 1.48313 1.24490 1.31537 1.29274 1.16801 0.84113 0.79117 0.81158 1.90815 1.51639 1.69858 1.33654 1.23435 1.00750 1.04357 1.05123 1.21348 0.93510 0.92436 0.98545 1.20475 0.96797 1.01127 0.99057 1.26143 1.01561 1.01470 1.07078 1.82483 1.14980 1.25998 1.14602 1.25192 0.99789 1.03228 1.07907 1.23512 1.00500 1.03898 1.01244 1.84200 1.13898 1.34615 1.31253 1.23052 0.86082 0.92706 1.01524 0.93239 0.79281 0.86933 0.89073 0.88949 0.88638 0.84004 0.79111 0.78688 0.91893 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.06 13.97 21.65 0.30 -62.76 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.96 44.23 27.74 68.60 1.90 46.13 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.24 -9.53 6.52 99.48 0.65 -8.88 16 7 C -0.24 -13.49 10.47 84.04 0.88 -12.61 16 8 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 9 N -0.73 -32.69 5.08 -315.89 -1.61 -34.30 16 10 C 0.17 6.17 3.70 46.48 0.17 6.34 16 11 H 0.06 2.48 8.13 -2.38 -0.02 2.46 16 12 C -0.12 -3.01 6.59 31.88 0.21 -2.80 16 13 C 0.09 2.19 5.21 86.73 0.45 2.65 16 14 N -0.60 -19.57 3.33 -816.49 -2.72 -22.29 16 15 C 0.60 21.00 7.82 86.45 0.68 21.68 16 16 O -0.58 -24.81 17.11 -4.35 -0.07 -24.88 16 17 C -0.22 -6.10 6.41 23.60 0.15 -5.95 16 18 C -0.02 -0.59 10.01 23.51 0.24 -0.36 16 19 C -0.16 -3.18 6.54 -19.17 -0.13 -3.30 16 20 C -0.22 -2.84 11.02 67.95 0.75 -2.09 16 21 S 0.35 2.49 22.97 -56.49 -1.30 1.19 16 22 C -0.22 -2.52 11.15 66.91 0.75 -1.78 16 23 C -0.17 -3.14 7.19 23.23 0.17 -2.97 16 24 S 0.10 2.18 18.58 -56.49 -1.05 1.13 16 25 C 0.09 3.50 6.59 86.85 0.57 4.07 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 27 H 0.37 15.40 5.58 -92.70 -0.52 14.88 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.09 2.08 8.01 -2.39 -0.02 2.06 16 30 H 0.09 1.91 6.90 -2.39 -0.02 1.89 16 31 H 0.10 1.90 7.04 -2.39 -0.02 1.88 16 32 H 0.14 3.61 8.02 -2.91 -0.02 3.58 16 33 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.20 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 2.04 8.03 -2.39 -0.02 2.02 16 Total: -1.00 -77.15 328.19 1.36 -75.79 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.55 Total: 20.29 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.35 Total: -0.29 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -4.02 Total: -119.35 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.07 Total: -24.88 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.13 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -2.35 Total: 2.31 kcal Total: -77.15 1.36 -75.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969383593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.848 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds