Wall clock time and date at job start Tue Mar 31 2020 12:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46973 * 115.49609 * 3 2 1 5 5 C 1.36942 * 119.99970 * 273.24918 * 4 3 2 6 6 H 1.08002 * 120.00024 * 186.69982 * 5 4 3 7 7 C 1.38816 * 119.99783 * 6.69779 * 5 4 3 8 8 N 1.31620 * 119.99904 * 25.19402 * 7 5 4 9 9 Si 1.86798 * 119.99835 * 205.19692 * 7 5 4 10 10 H 1.48493 * 109.47335 * 89.99910 * 9 7 5 11 11 H 1.48498 * 109.46764 * 210.00088 * 9 7 5 12 12 H 1.48503 * 109.47141 * 329.99954 * 9 7 5 13 13 S 1.65605 * 120.00381 * 93.24644 * 4 3 2 14 14 O 1.42097 * 106.40248 * 156.45707 * 13 4 3 15 15 O 1.42101 * 106.39721 * 23.54099 * 13 4 3 16 16 C 1.76189 * 107.21848 * 270.00258 * 13 4 3 17 17 C 1.34855 * 126.28946 * 269.68179 * 16 13 4 18 18 N 1.36346 * 108.21649 * 180.26482 * 17 16 13 19 19 H 0.97007 * 125.63475 * 180.02562 * 18 17 16 20 20 C 1.36343 * 108.72954 * 0.02562 * 18 17 16 21 21 C 1.50702 * 125.89007 * 180.02562 * 20 18 17 22 22 F 1.39901 * 109.46892 * 359.97438 * 21 20 18 23 23 F 1.39889 * 109.47126 * 119.97235 * 21 20 18 24 24 F 1.39899 * 109.46965 * 239.97418 * 21 20 18 25 25 C 1.34851 * 108.21799 * 359.97438 * 20 18 17 26 26 H 4.40641 * 5.51432 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47479 * 355.49495 * 3 2 1 28 28 H 1.08997 * 109.47278 * 235.48927 * 3 2 1 29 29 H 0.96998 * 119.99363 * 180.02562 * 8 7 5 30 30 H 1.07993 * 125.89037 * 0.23523 * 17 16 13 31 31 H 1.07999 * 126.28877 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5954 -1.2467 5 6 3.2992 -0.1857 -2.3593 6 1 3.7597 0.2265 -3.2450 7 6 2.8748 -1.5074 -2.3486 8 7 1.9120 -1.8828 -1.5335 9 14 3.6701 -2.7529 -3.4911 10 1 4.8305 -3.3800 -2.8091 11 1 2.6799 -3.8006 -3.8474 12 1 4.1321 -2.0683 -4.7253 13 16 3.4859 2.2124 -1.3107 14 8 4.4111 2.3799 -2.3761 15 8 3.7562 2.6172 0.0243 16 6 2.0124 3.0480 -1.7952 17 6 1.6325 3.3286 -3.0584 18 7 0.4394 3.9867 -3.0084 19 1 -0.0621 4.3067 -3.7747 20 6 0.0677 4.1208 -1.7035 21 6 -1.1886 4.7888 -1.2070 22 9 -1.9289 5.2589 -2.2971 23 9 -1.9542 3.8656 -0.4868 24 9 -0.8490 5.8620 -0.3762 25 6 1.0176 3.5517 -0.9340 26 1 -1.0501 0.0001 0.0003 27 1 3.0098 -1.0236 0.0807 28 1 3.0090 0.5830 0.8468 29 1 1.6158 -2.8064 -1.5258 30 1 2.1792 3.0761 -3.9548 31 1 1.0160 3.4926 0.1444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117684208.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:59 Heat of formation + Delta-G solvation = -119.210333 kcal Electronic energy + Delta-G solvation = -25606.487160 eV Core-core repulsion = 21181.912976 eV Total energy + Delta-G solvation = -4424.574183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.039 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.32801 -48.87588 -48.79156 -42.32972 -37.96095 -37.73645 -36.37497 -33.63998 -32.77114 -32.44519 -31.65606 -28.23197 -26.57892 -25.54290 -22.93049 -22.06742 -20.78442 -20.12155 -19.67649 -19.52895 -19.33281 -18.44004 -18.04355 -17.23011 -16.70623 -16.32349 -16.05687 -15.80839 -15.70362 -15.31931 -15.24287 -15.18666 -14.99879 -14.96197 -14.91129 -14.75344 -14.09875 -13.69256 -13.48294 -13.43909 -13.01050 -12.72113 -12.63010 -12.54756 -12.18362 -12.00924 -11.83290 -11.33291 -10.90040 -10.58514 -10.34181 -9.98790 -9.81140 -8.19622 -5.71222 -0.02828 0.62024 1.14613 1.23030 1.54797 1.60973 1.68459 1.96326 2.20595 2.42674 2.56448 2.62730 2.94688 3.03658 3.05313 3.22808 3.36948 3.71350 4.02532 4.05014 4.29886 4.41294 4.63174 4.81161 5.06853 5.31317 5.36011 5.45464 5.54126 5.64233 6.27843 6.47957 6.95917 7.30837 7.34391 8.73230 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.005045 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.544039 B = 5548.499526 C = 5909.251515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.137 4.137 3 C 0.239 3.761 4 N -0.820 5.820 5 C -0.294 4.294 6 H 0.117 0.883 7 C 0.002 3.998 8 N -0.852 5.852 9 Si 0.981 3.019 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.262 1.262 13 S 2.615 3.385 14 O -1.003 7.003 15 O -1.014 7.014 16 C -0.760 4.760 17 C 0.155 3.845 18 N -0.515 5.515 19 H 0.439 0.561 20 C -0.111 4.111 21 C 0.555 3.445 22 F -0.174 7.174 23 F -0.170 7.170 24 F -0.169 7.169 25 C -0.052 4.052 26 H 0.221 0.779 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.272 0.728 30 H 0.215 0.785 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 7.239 -2.764 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.139 4.139 3 C 0.113 3.887 4 N -0.644 5.644 5 C -0.435 4.435 6 H 0.134 0.866 7 C -0.207 4.207 8 N -0.490 5.490 9 Si 0.805 3.195 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.186 1.186 13 S 2.713 3.287 14 O -0.993 6.993 15 O -1.004 7.004 16 C -0.849 4.849 17 C 0.014 3.986 18 N -0.112 5.112 19 H 0.281 0.719 20 C -0.222 4.222 21 C 0.500 3.500 22 F -0.155 7.155 23 F -0.151 7.151 24 F -0.151 7.151 25 C -0.078 4.078 26 H 0.238 0.762 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.231 0.769 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.012 7.810 -2.571 10.186 hybrid contribution -1.306 -0.384 -0.802 1.580 sum -7.318 7.426 -3.373 10.958 Atomic orbital electron populations 1.24822 0.96028 1.04318 1.02672 1.23558 0.94991 0.97271 0.98095 1.18338 0.84335 1.00575 0.85414 1.54552 1.74514 1.20132 1.15215 1.19988 1.34615 0.92586 0.96313 0.86565 1.26047 0.95210 0.99949 0.99450 1.70321 1.22547 1.18568 1.37573 0.85102 0.77963 0.77688 0.78741 1.19953 1.21130 1.18630 1.06982 0.76656 0.72945 0.72126 1.93347 1.62765 1.86451 1.56740 1.93343 1.86148 1.82890 1.38064 1.32193 1.26709 1.24792 1.01249 1.22265 0.85497 0.91987 0.98810 1.41858 1.18518 1.44340 1.06435 0.71895 1.20012 0.99463 1.15736 0.86969 1.16980 0.81545 0.76082 0.75375 1.93180 1.78906 1.89117 1.54314 1.93247 1.76939 1.66259 1.78666 1.93239 1.92280 1.56760 1.72793 1.20381 0.91616 0.96411 0.99363 0.76233 0.87676 0.89639 0.91804 0.76886 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.54 19.25 74.32 1.43 -9.11 16 2 C -0.14 -6.04 11.25 31.13 0.35 -5.69 16 3 C 0.24 10.66 5.45 84.57 0.46 11.12 16 4 N -0.82 -37.75 2.88 -352.52 -1.02 -38.76 16 5 C -0.29 -13.87 9.48 84.03 0.80 -13.07 16 6 H 0.12 5.40 7.22 -2.91 -0.02 5.38 16 7 C 0.00 0.08 4.92 84.86 0.42 0.50 16 8 N -0.85 -40.29 8.97 21.65 0.19 -40.10 16 9 Si 0.98 37.12 29.62 68.60 2.03 39.15 16 10 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 11 H -0.29 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 13 S 2.61 115.60 5.80 -56.49 -0.33 115.27 16 14 O -1.00 -47.21 16.63 -128.00 -2.13 -49.34 16 15 O -1.01 -48.20 16.45 -128.00 -2.11 -50.30 16 16 C -0.76 -28.90 6.21 22.14 0.14 -28.76 16 17 C 0.16 4.75 11.69 83.21 0.97 5.73 16 18 N -0.52 -13.09 5.96 -182.76 -1.09 -14.18 16 19 H 0.44 7.50 8.71 -92.70 -0.81 6.69 16 20 C -0.11 -3.30 6.43 41.08 0.26 -3.03 16 21 C 0.56 14.46 3.48 71.24 0.25 14.70 16 22 F -0.17 -3.92 16.97 44.97 0.76 -3.15 16 23 F -0.17 -4.69 17.30 44.97 0.78 -3.92 16 24 F -0.17 -4.46 17.30 44.97 0.78 -3.69 16 25 C -0.05 -1.85 10.58 22.14 0.23 -1.62 16 26 H 0.22 7.31 7.80 -4.41 -0.03 7.28 16 27 H 0.11 4.83 6.41 -2.39 -0.02 4.81 16 28 H 0.09 3.59 6.95 -2.39 -0.02 3.58 16 29 H 0.27 12.32 8.31 -92.71 -0.77 11.55 16 30 H 0.21 5.34 8.06 -2.91 -0.02 5.31 16 31 H 0.15 5.29 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -60.57 309.46 3.60 -56.97 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.41 Total: 21.28 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 5.31 Total: -29.23 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -1.91 Total: -93.04 kcal Atomic # 8 Polarization: -95.41 SS G_CDS: -4.23 Total: -99.65 kcal Atomic # 9 Polarization: -13.07 SS G_CDS: 2.32 Total: -10.76 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 115.60 SS G_CDS: -0.33 Total: 115.27 kcal Total: -60.57 3.60 -56.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117684208.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.243 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds