Wall clock time and date at job start Tue Mar 31 2020 12:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35913 * 116.99742 * 2 1 4 4 C 1.38884 * 119.94391 * 269.71868 * 3 2 1 5 5 Cl 1.73607 * 119.97248 * 0.02834 * 4 3 2 6 6 C 1.38027 * 120.05835 * 179.77024 * 4 3 2 7 7 C 1.39361 * 119.94411 * 0.48513 * 6 4 3 8 8 C 1.48378 * 120.06096 * 179.78628 * 7 6 4 9 9 C 1.39749 * 120.00338 * 179.97438 * 8 7 6 10 10 C 1.38377 * 120.37554 * 179.97438 * 9 8 7 11 11 C 1.37722 * 120.38615 * 359.97438 * 10 9 8 12 12 C 1.40760 * 119.98779 * 0.02562 * 11 10 9 13 13 C 1.41428 * 120.18390 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99791 * 150.20163 * 13 12 11 15 15 C 1.39930 * 120.00270 * 330.20140 * 13 12 11 16 16 N 1.30825 * 120.00108 * 161.71940 * 15 13 12 17 17 Si 1.86796 * 119.99706 * 341.72300 * 15 13 12 18 18 H 1.48507 * 109.47369 * 95.41202 * 17 15 13 19 19 H 1.48502 * 109.47260 * 215.41105 * 17 15 13 20 20 H 1.48508 * 109.47395 * 335.41239 * 17 15 13 21 21 C 1.38741 * 119.99939 * 359.71027 * 8 7 6 22 22 C 1.39367 * 119.88398 * 359.77645 * 7 6 4 23 23 C 1.38023 * 119.94317 * 359.97438 * 22 7 6 24 24 Cl 1.73602 * 119.97233 * 180.02562 * 23 22 7 25 25 H 1.08999 * 109.46407 * 60.00183 * 1 2 3 26 26 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46924 * 300.00081 * 1 2 3 28 28 H 1.08001 * 120.03163 * 180.25903 * 6 4 3 29 29 H 1.08005 * 119.80717 * 359.96078 * 9 8 7 30 30 H 1.08003 * 119.80966 * 180.02562 * 10 9 8 31 31 H 1.08002 * 120.00905 * 180.02562 * 11 10 9 32 32 H 0.96995 * 119.99859 * 179.97438 * 16 15 13 33 33 H 1.08007 * 120.19109 * 359.97438 * 21 8 7 34 34 H 1.07999 * 120.03015 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 2.3661 1.8260 -1.2034 5 17 1.9769 1.0476 -2.7056 6 6 2.9884 3.0581 -1.2062 7 6 3.3048 3.6803 0.0000 8 6 3.9780 5.0025 0.0000 9 6 4.2943 5.6257 1.2102 10 6 4.9226 6.8585 1.2192 11 6 5.2440 7.4853 0.0358 12 6 4.9327 6.8719 -1.1923 13 6 5.2603 7.5121 -2.4101 14 1 5.4825 6.9226 -3.2873 15 6 5.2966 8.9093 -2.4785 16 7 5.9289 9.5000 -3.4597 17 14 4.4421 9.9309 -1.1687 18 1 5.4243 10.3189 -0.1246 19 1 3.8703 11.1530 -1.7890 20 1 3.3524 9.1329 -0.5512 21 6 4.2985 5.6178 -1.2015 22 6 2.9875 3.0585 1.2062 23 6 2.3606 1.8289 1.2035 24 17 1.9645 1.0540 2.7056 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.2332 3.5378 -2.1423 29 1 4.0466 5.1423 2.1438 30 1 5.1632 7.3317 2.1598 31 1 5.7347 8.4473 0.0499 32 1 5.9537 10.4685 -3.5072 33 1 4.0598 5.1369 -2.1387 34 1 3.2320 3.5384 2.1423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204823136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:00 Heat of formation + Delta-G solvation = -10.630169 kcal Electronic energy + Delta-G solvation = -21232.017375 eV Core-core repulsion = 17760.381028 eV Total energy + Delta-G solvation = -3471.636347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17790 -38.39082 -37.10315 -36.78493 -36.24272 -33.77879 -31.72522 -31.06788 -30.20899 -28.56390 -26.73687 -25.38835 -23.09783 -23.05214 -20.73751 -20.43971 -18.29397 -17.61936 -16.56203 -16.19880 -15.89785 -15.81319 -14.91905 -14.46581 -14.25315 -14.16293 -13.64486 -13.52538 -13.39542 -12.81724 -12.40077 -12.31951 -12.24685 -12.07416 -11.92767 -11.64044 -11.26009 -11.15000 -11.13382 -10.85783 -10.69109 -10.44946 -10.14556 -9.93319 -9.70921 -9.32733 -8.96111 -8.79531 -7.85249 -7.41883 -7.05344 -4.61636 0.68473 0.97657 1.75576 2.23372 2.38827 2.47470 3.02667 3.13981 3.22020 3.36639 3.68732 3.88882 4.42332 4.75205 4.89466 5.10147 5.13718 5.17547 5.20265 5.26943 5.30251 5.46215 5.81456 5.84435 5.98299 6.04260 6.21731 6.32718 6.42736 6.62074 6.78776 6.97065 7.18934 7.22577 7.39922 7.53533 7.70419 7.90500 8.22440 8.48041 8.66913 9.96823 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.003576 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.839366 B = 7829.056658 C = 9036.008951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.319 6.319 3 C 0.090 3.910 4 C -0.038 4.038 5 Cl -0.053 7.053 6 C -0.095 4.095 7 C 0.010 3.990 8 C -0.035 4.035 9 C -0.223 4.223 10 C -0.078 4.078 11 C -0.227 4.227 12 C 0.090 3.910 13 C -0.447 4.447 14 H 0.092 0.908 15 C 0.085 3.915 16 N -0.804 5.804 17 Si 0.910 3.090 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.244 1.244 21 C -0.181 4.181 22 C -0.097 4.097 23 C -0.039 4.039 24 Cl -0.056 7.056 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.286 0.714 33 H 0.107 0.893 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 -12.478 6.853 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C 0.044 3.956 4 C -0.065 4.065 5 Cl -0.024 7.024 6 C -0.113 4.113 7 C 0.009 3.991 8 C -0.035 4.035 9 C -0.243 4.243 10 C -0.096 4.096 11 C -0.246 4.246 12 C 0.087 3.913 13 C -0.475 4.475 14 H 0.110 0.890 15 C -0.135 4.135 16 N -0.428 5.428 17 Si 0.736 3.264 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.167 1.167 21 C -0.200 4.200 22 C -0.115 4.115 23 C -0.067 4.067 24 Cl -0.027 7.027 25 H 0.067 0.933 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.963 -12.595 6.647 16.827 hybrid contribution -0.445 0.640 0.438 0.895 sum -9.409 -11.955 7.085 16.782 Atomic orbital electron populations 1.23034 0.78715 1.03397 1.00904 1.86085 1.20041 1.23337 1.94091 1.17972 1.00380 0.87768 0.89442 1.21027 1.04112 0.94757 0.86599 1.98367 1.92771 1.80653 1.30569 1.21319 0.97523 0.92476 1.00023 1.18970 0.94869 0.94267 0.90953 1.18221 0.99638 0.91061 0.94607 1.20409 1.10452 0.98090 0.95304 1.20542 0.97527 0.94791 0.96781 1.21171 1.08857 1.01761 0.92817 1.17642 0.89040 0.91786 0.92831 1.19498 1.39471 0.91609 0.96906 0.88968 1.26153 0.92545 0.98681 0.96117 1.69688 1.30443 1.12290 1.30336 0.86329 0.81463 0.78416 0.80176 1.19555 1.21682 1.16684 1.21144 1.05210 0.98441 0.95221 1.21222 0.97993 0.92595 0.99739 1.21010 1.04322 0.94849 0.86479 1.98359 1.92672 1.80900 1.30727 0.93285 0.88584 0.93343 0.83182 0.88270 0.88354 0.87982 0.90302 0.87519 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.13 101.05 1.12 1.45 16 2 O -0.32 -4.17 9.31 -19.47 -0.18 -4.35 16 3 C 0.09 1.27 5.71 -39.10 -0.22 1.05 16 4 C -0.04 -0.54 6.33 -39.42 -0.25 -0.79 16 5 Cl -0.05 -0.69 28.49 -51.86 -1.48 -2.17 16 6 C -0.09 -1.46 9.19 -39.24 -0.36 -1.82 16 7 C 0.01 0.17 5.88 -104.88 -0.62 -0.45 16 8 C -0.04 -0.68 5.87 -104.97 -0.62 -1.29 16 9 C -0.22 -4.22 9.44 -38.97 -0.37 -4.59 16 10 C -0.08 -1.56 10.01 -39.72 -0.40 -1.96 16 11 C -0.23 -5.13 7.17 -38.82 -0.28 -5.41 16 12 C 0.09 2.14 5.10 -106.86 -0.55 1.60 16 13 C -0.45 -11.47 9.57 -37.73 -0.36 -11.83 16 14 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 15 C 0.08 2.12 5.40 -17.35 -0.09 2.03 16 16 N -0.80 -20.65 13.93 55.55 0.77 -19.88 16 17 Si 0.91 19.85 24.52 -169.99 -4.17 15.69 16 18 H -0.27 -5.70 6.71 56.52 0.38 -5.32 16 19 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.24 -5.43 6.86 56.52 0.39 -5.04 16 21 C -0.18 -3.88 9.17 -38.53 -0.35 -4.23 16 22 C -0.10 -1.42 9.20 -39.24 -0.36 -1.78 16 23 C -0.04 -0.55 6.33 -39.42 -0.25 -0.79 16 24 Cl -0.06 -0.68 28.49 -51.86 -1.48 -2.16 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.15 2.26 6.19 -52.49 -0.32 1.94 16 29 H 0.10 1.59 6.18 -52.48 -0.32 1.27 16 30 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.10 2.31 4.72 -52.49 -0.25 2.07 16 32 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.11 2.12 6.19 -52.48 -0.32 1.80 16 34 H 0.15 1.96 6.18 -52.49 -0.32 1.64 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -25.76 319.19 -8.50 -34.25 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.83 Total: 2.63 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -3.95 Total: -28.82 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.77 Total: -19.88 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.18 Total: -4.35 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.17 Total: 15.69 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -2.95 Total: -4.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.76 -8.50 -34.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204823136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.623 kcal (2) G-P(sol) polarization free energy of solvation -25.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds