Wall clock time and date at job start Tue Mar 31 2020 12:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35913 * 116.99742 * 2 1 4 4 C 1.38884 * 119.94391 * 269.71868 * 3 2 1 5 5 Cl 1.73607 * 119.97248 * 0.02834 * 4 3 2 6 6 C 1.38027 * 120.05835 * 179.77024 * 4 3 2 7 7 C 1.39361 * 119.94411 * 0.48513 * 6 4 3 8 8 C 1.48378 * 120.06096 * 179.78628 * 7 6 4 9 9 C 1.39749 * 120.00338 * 179.97438 * 8 7 6 10 10 C 1.38377 * 120.37554 * 179.97438 * 9 8 7 11 11 C 1.37722 * 120.38615 * 359.97438 * 10 9 8 12 12 C 1.40760 * 119.98779 * 0.02562 * 11 10 9 13 13 C 1.41428 * 120.18390 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99791 * 150.20163 * 13 12 11 15 15 C 1.39930 * 120.00270 * 330.20140 * 13 12 11 16 16 N 1.30825 * 120.00108 * 161.71940 * 15 13 12 17 17 Si 1.86796 * 119.99706 * 341.72300 * 15 13 12 18 18 H 1.48507 * 109.47369 * 95.41202 * 17 15 13 19 19 H 1.48502 * 109.47260 * 215.41105 * 17 15 13 20 20 H 1.48508 * 109.47395 * 335.41239 * 17 15 13 21 21 C 1.38741 * 119.99939 * 359.71027 * 8 7 6 22 22 C 1.39367 * 119.88398 * 359.77645 * 7 6 4 23 23 C 1.38023 * 119.94317 * 359.97438 * 22 7 6 24 24 Cl 1.73602 * 119.97233 * 180.02562 * 23 22 7 25 25 H 1.08999 * 109.46407 * 60.00183 * 1 2 3 26 26 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46924 * 300.00081 * 1 2 3 28 28 H 1.08001 * 120.03163 * 180.25903 * 6 4 3 29 29 H 1.08005 * 119.80717 * 359.96078 * 9 8 7 30 30 H 1.08003 * 119.80966 * 180.02562 * 10 9 8 31 31 H 1.08002 * 120.00905 * 180.02562 * 11 10 9 32 32 H 0.96995 * 119.99859 * 179.97438 * 16 15 13 33 33 H 1.08007 * 120.19109 * 359.97438 * 21 8 7 34 34 H 1.07999 * 120.03015 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 2.3661 1.8260 -1.2034 5 17 1.9769 1.0476 -2.7056 6 6 2.9884 3.0581 -1.2062 7 6 3.3048 3.6803 0.0000 8 6 3.9780 5.0025 0.0000 9 6 4.2943 5.6257 1.2102 10 6 4.9226 6.8585 1.2192 11 6 5.2440 7.4853 0.0358 12 6 4.9327 6.8719 -1.1923 13 6 5.2603 7.5121 -2.4101 14 1 5.4825 6.9226 -3.2873 15 6 5.2966 8.9093 -2.4785 16 7 5.9289 9.5000 -3.4597 17 14 4.4421 9.9309 -1.1687 18 1 5.4243 10.3189 -0.1246 19 1 3.8703 11.1530 -1.7890 20 1 3.3524 9.1329 -0.5512 21 6 4.2985 5.6178 -1.2015 22 6 2.9875 3.0585 1.2062 23 6 2.3606 1.8289 1.2035 24 17 1.9645 1.0540 2.7056 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.2332 3.5378 -2.1423 29 1 4.0466 5.1423 2.1438 30 1 5.1632 7.3317 2.1598 31 1 5.7347 8.4473 0.0499 32 1 5.9537 10.4685 -3.5072 33 1 4.0598 5.1369 -2.1387 34 1 3.2320 3.5384 2.1423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204823136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:59 Heat of formation + Delta-G solvation = -22.126880 kcal Electronic energy + Delta-G solvation = -21232.515910 eV Core-core repulsion = 17760.381028 eV Total energy + Delta-G solvation = -3472.134882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32375 -39.80669 -38.33770 -37.83998 -37.35881 -35.53226 -33.17447 -32.45233 -31.64664 -29.82508 -27.74610 -27.08753 -24.42318 -24.30765 -22.18645 -22.04591 -19.54616 -19.10422 -17.79450 -17.68152 -17.25186 -16.80977 -16.52201 -15.74910 -15.56818 -15.36027 -15.00086 -14.85119 -14.63532 -14.48369 -13.86136 -13.69053 -13.52425 -13.41928 -13.06072 -12.80496 -12.70626 -12.63219 -12.37928 -12.17824 -12.02346 -11.93046 -11.63796 -11.42128 -11.07384 -11.04809 -10.29029 -9.91022 -9.55479 -8.91184 -8.88283 -6.51429 -0.53906 -0.16731 0.67179 0.79623 0.89948 1.14498 1.27351 1.42024 1.49555 2.10451 2.16627 2.54767 2.71839 3.48335 3.54156 3.78293 3.94551 4.02467 4.06829 4.37130 4.41337 4.42221 4.46921 4.59958 4.70181 4.75656 4.82119 4.88834 4.97082 5.15749 5.24337 5.33895 5.56739 5.77072 5.87515 5.94724 6.18729 6.22383 6.37997 6.70971 6.81757 8.19283 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.003576 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.839366 B = 7829.056658 C = 9036.008951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.330 6.330 3 C 0.102 3.898 4 C -0.046 4.046 5 Cl -0.043 7.043 6 C -0.096 4.096 7 C -0.013 4.013 8 C -0.030 4.030 9 C -0.206 4.206 10 C -0.081 4.081 11 C -0.243 4.243 12 C 0.072 3.928 13 C -0.487 4.487 14 H 0.056 0.944 15 C 0.048 3.952 16 N -0.851 5.851 17 Si 0.963 3.037 18 H -0.256 1.256 19 H -0.280 1.280 20 H -0.251 1.251 21 C -0.198 4.198 22 C -0.084 4.084 23 C -0.044 4.044 24 Cl -0.036 7.036 25 H 0.050 0.950 26 H 0.121 0.879 27 H 0.054 0.946 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.293 0.707 33 H 0.107 0.893 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 -14.212 10.187 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.247 6.247 3 C 0.056 3.944 4 C -0.074 4.074 5 Cl -0.014 7.014 6 C -0.114 4.114 7 C -0.014 4.014 8 C -0.030 4.030 9 C -0.224 4.224 10 C -0.099 4.099 11 C -0.262 4.262 12 C 0.070 3.930 13 C -0.517 4.517 14 H 0.074 0.926 15 C -0.166 4.166 16 N -0.477 5.477 17 Si 0.787 3.213 18 H -0.181 1.181 19 H -0.207 1.207 20 H -0.174 1.174 21 C -0.217 4.217 22 C -0.102 4.102 23 C -0.072 4.072 24 Cl -0.007 7.007 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.628 -14.345 9.987 20.457 hybrid contribution -0.072 0.776 -0.440 0.895 sum -10.700 -13.569 9.548 19.742 Atomic orbital electron populations 1.23285 0.76667 1.05314 1.01302 1.86059 1.21858 1.22639 1.94103 1.18105 0.99308 0.87637 0.89374 1.21039 1.04314 0.94619 0.87378 1.98369 1.92664 1.80361 1.30041 1.21303 0.97444 0.92929 0.99744 1.18772 0.96829 0.93612 0.92140 1.18467 0.98488 0.92089 0.93947 1.20956 1.07580 0.97278 0.96622 1.20960 0.96702 0.95084 0.97190 1.21299 1.09479 1.02032 0.93380 1.17776 0.89708 0.92854 0.92710 1.19469 1.43022 0.92245 0.96915 0.92559 1.26801 0.92739 0.99194 0.97884 1.69727 1.32708 1.12891 1.32421 0.85518 0.80402 0.77123 0.78288 1.18134 1.20674 1.17449 1.21279 1.05707 0.98114 0.96640 1.21309 0.96851 0.92578 0.99471 1.21025 1.04128 0.94777 0.87262 1.98370 1.92474 1.80505 1.29348 0.93132 0.86034 0.92704 0.83822 0.84327 0.84784 0.88432 0.89651 0.87492 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.13 113.37 1.26 1.72 16 2 O -0.33 -7.67 9.31 -92.57 -0.86 -8.53 16 3 C 0.10 2.60 5.71 22.58 0.13 2.73 16 4 C -0.05 -1.25 6.33 22.37 0.14 -1.11 16 5 Cl -0.04 -1.08 28.49 -2.72 -0.08 -1.16 16 6 C -0.10 -2.86 9.19 22.49 0.21 -2.65 16 7 C -0.01 -0.40 5.88 -20.03 -0.12 -0.51 16 8 C -0.03 -1.10 5.87 -20.09 -0.12 -1.22 16 9 C -0.21 -7.01 9.44 22.67 0.21 -6.80 16 10 C -0.08 -3.01 10.01 22.18 0.22 -2.79 16 11 C -0.24 -10.83 7.17 22.76 0.16 -10.67 16 12 C 0.07 3.52 5.10 -21.32 -0.11 3.41 16 13 C -0.49 -26.72 9.57 23.47 0.22 -26.49 16 14 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 15 C 0.05 2.54 5.40 85.25 0.46 3.00 16 16 N -0.85 -46.24 13.93 21.82 0.30 -45.94 16 17 Si 0.96 41.62 24.52 68.60 1.68 43.30 16 18 H -0.26 -10.37 6.71 99.48 0.67 -9.70 16 19 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.25 -10.97 6.86 99.48 0.68 -10.28 16 21 C -0.20 -8.64 9.17 22.95 0.21 -8.43 16 22 C -0.08 -2.15 9.20 22.49 0.21 -1.95 16 23 C -0.04 -1.09 6.33 22.38 0.14 -0.95 16 24 Cl -0.04 -0.75 28.49 -2.72 -0.08 -0.83 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.14 4.41 6.19 -2.91 -0.02 4.39 16 29 H 0.14 3.65 6.18 -2.91 -0.02 3.63 16 30 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 31 H 0.10 4.38 4.72 -2.91 -0.01 4.37 16 32 H 0.29 14.30 8.30 -92.71 -0.77 13.54 16 33 H 0.11 4.50 6.19 -2.91 -0.02 4.48 16 34 H 0.16 3.56 6.18 -2.91 -0.02 3.55 16 Total: -1.00 -57.70 319.19 5.30 -52.40 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.10 Total: 13.45 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 3.24 Total: -52.70 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.30 Total: -45.94 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.86 Total: -8.53 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.68 Total: 43.30 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.15 Total: -1.99 kcal Total: -57.70 5.30 -52.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204823136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.272 kcal (2) G-P(sol) polarization free energy of solvation -57.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds