Wall clock time and date at job start Tue Mar 31 2020 12:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35856 * 117.00345 * 2 1 4 4 C 1.39031 * 119.91096 * 270.27303 * 3 2 1 5 5 Cl 1.73601 * 119.96151 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.07778 * 180.23172 * 4 3 2 7 7 C 1.39732 * 119.91796 * 359.47172 * 6 4 3 8 8 C 1.47768 * 120.08514 * 180.25537 * 7 6 4 9 9 C 1.39235 * 120.33628 * 309.71923 * 8 7 6 10 10 C 1.38029 * 119.97328 * 179.69753 * 9 8 7 11 11 C 1.38964 * 120.68264 * 0.60740 * 10 9 8 12 12 C 1.36397 * 120.70117 * 359.67281 * 11 10 9 13 13 C 1.40764 * 119.99044 * 0.02562 * 12 11 10 14 14 C 1.40847 * 120.33556 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00195 * 149.32977 * 14 13 12 16 16 C 1.40040 * 119.99758 * 329.32580 * 14 13 12 17 17 N 1.30792 * 120.00305 * 162.48479 * 16 14 13 18 18 Si 1.86807 * 120.00133 * 342.48253 * 16 14 13 19 19 H 1.48496 * 109.47104 * 95.37096 * 18 16 14 20 20 H 1.48496 * 109.46916 * 215.37307 * 18 16 14 21 21 H 1.48507 * 109.46883 * 335.37029 * 18 16 14 22 22 C 1.39738 * 119.83007 * 0.27447 * 7 6 4 23 23 C 1.37873 * 119.91892 * 0.02562 * 22 7 6 24 24 Cl 1.73598 * 119.96049 * 180.02562 * 23 22 7 25 25 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46940 * 300.00488 * 1 2 3 27 27 H 1.09003 * 109.46383 * 60.00382 * 1 2 3 28 28 H 1.08000 * 120.03563 * 179.74238 * 6 4 3 29 29 H 1.07991 * 120.01810 * 359.97438 * 9 8 7 30 30 H 1.07997 * 119.66038 * 180.28066 * 10 9 8 31 31 H 1.08003 * 119.64995 * 179.69800 * 11 10 9 32 32 H 1.08006 * 120.01163 * 180.02562 * 12 11 10 33 33 H 0.96999 * 120.00834 * 180.02562 * 17 16 14 34 34 H 1.08006 * 120.04165 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2104 0.0000 4 6 2.3555 1.8308 -1.2051 5 17 1.9541 1.0573 -2.7066 6 6 2.9858 3.0571 -1.2092 7 6 3.3034 3.6814 -0.0001 8 6 3.9739 4.9983 -0.0001 9 6 5.1168 5.2055 -0.7679 10 6 5.7334 6.4404 -0.7672 11 6 5.2330 7.4825 0.0040 12 6 4.1184 7.3084 0.7708 13 6 3.4630 6.0628 0.7869 14 6 2.3112 5.8752 1.5756 15 1 1.5475 5.1802 1.2594 16 6 2.1565 6.5899 2.7700 17 7 0.9761 6.6894 3.3243 18 14 3.6361 7.4010 3.5715 19 1 3.7079 8.8239 3.1527 20 1 3.5021 7.3259 5.0485 21 1 4.8746 6.6979 3.1505 22 6 2.9858 3.0571 1.2091 23 6 2.3611 1.8281 1.2051 24 17 1.9653 1.0518 2.7066 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 3.2298 3.5364 -2.1457 29 1 5.5181 4.4017 -1.3671 30 1 6.6170 6.5968 -1.3681 31 1 5.7315 8.4405 -0.0042 32 1 3.7388 8.1261 1.3656 33 1 0.8687 7.1847 4.1514 34 1 3.2293 3.5368 2.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204829888.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:06 Heat of formation + Delta-G solvation = -12.484023 kcal Electronic energy + Delta-G solvation = -21945.263446 eV Core-core repulsion = 18473.546710 eV Total energy + Delta-G solvation = -3471.716736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79960 -38.27392 -36.81831 -36.45328 -35.88106 -33.84685 -31.52220 -30.77340 -30.14246 -28.41377 -26.58496 -25.24893 -22.81132 -22.40567 -21.24629 -20.05107 -17.87201 -17.52629 -16.56021 -16.27027 -15.55809 -15.40973 -14.55457 -14.24185 -14.03624 -13.91780 -13.78658 -13.59457 -12.98536 -12.78399 -12.32388 -12.13841 -12.07317 -11.74590 -11.65762 -11.43332 -11.06853 -10.98597 -10.83147 -10.80877 -10.68308 -10.36465 -9.94740 -9.81668 -9.77861 -9.32983 -8.49748 -8.39967 -7.81328 -7.52280 -7.14231 -4.66941 1.15473 1.40044 2.08717 2.36615 2.51878 2.64037 2.98558 3.09229 3.18779 3.60594 3.81894 4.04020 4.33639 5.15719 5.19376 5.27131 5.40738 5.49666 5.53273 5.61862 5.73630 5.79295 5.88543 5.95758 6.15590 6.31013 6.42314 6.49700 6.68276 6.81865 6.90776 6.98877 7.19524 7.45306 7.51092 7.58555 7.68907 7.90923 8.15008 8.43771 8.57781 9.86038 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.005381 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.220715 B = 5202.676923 C = 6630.048984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.081 3.919 4 C -0.040 4.040 5 Cl -0.066 7.066 6 C -0.108 4.108 7 C 0.042 3.958 8 C -0.184 4.184 9 C -0.051 4.051 10 C -0.246 4.246 11 C -0.069 4.069 12 C -0.229 4.229 13 C 0.111 3.889 14 C -0.436 4.436 15 H 0.096 0.904 16 C 0.085 3.915 17 N -0.791 5.791 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.241 1.241 22 C -0.070 4.070 23 C -0.041 4.041 24 Cl -0.061 7.061 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.289 0.711 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -7.227 -3.926 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C 0.035 3.965 4 C -0.068 4.068 5 Cl -0.037 7.037 6 C -0.127 4.127 7 C 0.041 3.959 8 C -0.186 4.186 9 C -0.070 4.070 10 C -0.266 4.266 11 C -0.087 4.087 12 C -0.247 4.247 13 C 0.108 3.892 14 C -0.463 4.463 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.414 5.414 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.164 1.164 22 C -0.089 4.089 23 C -0.068 4.068 24 Cl -0.032 7.032 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.156 0.844 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.798 -7.495 -3.717 8.404 hybrid contribution 0.144 0.562 0.451 0.735 sum 0.942 -6.933 -3.266 7.722 Atomic orbital electron populations 1.23003 0.79146 1.02979 1.00940 1.86046 1.19806 1.23740 1.94124 1.17966 1.01173 0.87898 0.89428 1.20943 1.04959 0.94928 0.85946 1.98335 1.92748 1.81181 1.31432 1.21237 0.99219 0.92924 0.99336 1.18622 0.93821 0.93085 0.90364 1.18337 0.99545 0.91255 1.09437 1.20698 0.94291 0.95979 0.95993 1.20302 1.03812 0.94471 1.07965 1.20455 0.95316 0.97255 0.95722 1.20796 1.00607 0.97258 1.06087 1.17600 0.91186 0.89820 0.90596 1.19503 1.02676 1.20470 1.03643 0.88567 1.26215 0.96993 0.93164 0.97251 1.69662 1.23763 1.30738 1.17211 0.86373 0.83096 0.80255 0.77060 1.19425 1.21497 1.16414 1.21405 0.96029 0.91075 1.00399 1.21028 1.04653 0.94975 0.86140 1.98344 1.92743 1.80862 1.31240 0.88929 0.93303 0.93491 0.84428 0.88333 0.88558 0.88733 0.87961 0.90078 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.13 101.05 1.12 1.55 16 2 O -0.32 -5.08 9.31 -19.29 -0.18 -5.26 16 3 C 0.08 1.39 5.72 -38.99 -0.22 1.16 16 4 C -0.04 -0.68 6.33 -39.42 -0.25 -0.92 16 5 Cl -0.07 -0.96 28.49 -51.86 -1.48 -2.43 16 6 C -0.11 -1.88 9.30 -39.15 -0.36 -2.24 16 7 C 0.04 0.81 4.94 -104.88 -0.52 0.29 16 8 C -0.18 -3.87 5.52 -104.23 -0.58 -4.45 16 9 C -0.05 -0.99 9.51 -39.29 -0.37 -1.36 16 10 C -0.25 -4.68 10.03 -39.39 -0.40 -5.07 16 11 C -0.07 -1.38 9.96 -39.98 -0.40 -1.77 16 12 C -0.23 -5.05 7.09 -39.29 -0.28 -5.33 16 13 C 0.11 2.56 5.09 -106.55 -0.54 2.02 16 14 C -0.44 -10.61 7.50 -37.92 -0.28 -10.90 16 15 H 0.10 2.50 7.03 -52.49 -0.37 2.13 16 16 C 0.09 2.04 5.41 -17.32 -0.09 1.95 16 17 N -0.79 -19.54 13.93 55.55 0.77 -18.76 16 18 Si 0.91 19.20 24.52 -169.99 -4.17 15.03 16 19 H -0.27 -5.54 6.72 56.52 0.38 -5.16 16 20 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.24 -5.22 6.85 56.52 0.39 -4.83 16 22 C -0.07 -1.36 7.86 -39.15 -0.31 -1.67 16 23 C -0.04 -0.73 6.33 -39.42 -0.25 -0.98 16 24 Cl -0.06 -1.01 28.49 -51.86 -1.48 -2.48 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 2.19 8.05 -52.49 -0.42 1.77 16 29 H 0.10 1.66 8.05 -52.49 -0.42 1.24 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.10 2.26 4.79 -52.48 -0.25 2.01 16 33 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.15 3.04 7.30 -52.48 -0.38 2.65 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -24.59 321.19 -8.55 -33.14 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.13 Total: 3.65 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.73 Total: -27.72 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: 0.77 Total: -18.76 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.18 Total: -5.26 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.17 Total: 15.03 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -2.95 Total: -4.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -24.59 -8.55 -33.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204829888.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.656 kcal (2) G-P(sol) polarization free energy of solvation -24.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds