Wall clock time and date at job start Tue Mar 31 2020 12:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35856 * 117.00345 * 2 1 4 4 C 1.39031 * 119.91096 * 270.27303 * 3 2 1 5 5 Cl 1.73601 * 119.96151 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.07778 * 180.23172 * 4 3 2 7 7 C 1.39732 * 119.91796 * 359.47172 * 6 4 3 8 8 C 1.47768 * 120.08514 * 180.25537 * 7 6 4 9 9 C 1.39235 * 120.33628 * 309.71923 * 8 7 6 10 10 C 1.38029 * 119.97328 * 179.69753 * 9 8 7 11 11 C 1.38964 * 120.68264 * 0.60740 * 10 9 8 12 12 C 1.36397 * 120.70117 * 359.67281 * 11 10 9 13 13 C 1.40764 * 119.99044 * 0.02562 * 12 11 10 14 14 C 1.40847 * 120.33556 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00195 * 149.32977 * 14 13 12 16 16 C 1.40040 * 119.99758 * 329.32580 * 14 13 12 17 17 N 1.30792 * 120.00305 * 162.48479 * 16 14 13 18 18 Si 1.86807 * 120.00133 * 342.48253 * 16 14 13 19 19 H 1.48496 * 109.47104 * 95.37096 * 18 16 14 20 20 H 1.48496 * 109.46916 * 215.37307 * 18 16 14 21 21 H 1.48507 * 109.46883 * 335.37029 * 18 16 14 22 22 C 1.39738 * 119.83007 * 0.27447 * 7 6 4 23 23 C 1.37873 * 119.91892 * 0.02562 * 22 7 6 24 24 Cl 1.73598 * 119.96049 * 180.02562 * 23 22 7 25 25 H 1.08998 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46940 * 300.00488 * 1 2 3 27 27 H 1.09003 * 109.46383 * 60.00382 * 1 2 3 28 28 H 1.08000 * 120.03563 * 179.74238 * 6 4 3 29 29 H 1.07991 * 120.01810 * 359.97438 * 9 8 7 30 30 H 1.07997 * 119.66038 * 180.28066 * 10 9 8 31 31 H 1.08003 * 119.64995 * 179.69800 * 11 10 9 32 32 H 1.08006 * 120.01163 * 180.02562 * 12 11 10 33 33 H 0.96999 * 120.00834 * 180.02562 * 17 16 14 34 34 H 1.08006 * 120.04165 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2104 0.0000 4 6 2.3555 1.8308 -1.2051 5 17 1.9541 1.0573 -2.7066 6 6 2.9858 3.0571 -1.2092 7 6 3.3034 3.6814 -0.0001 8 6 3.9739 4.9983 -0.0001 9 6 5.1168 5.2055 -0.7679 10 6 5.7334 6.4404 -0.7672 11 6 5.2330 7.4825 0.0040 12 6 4.1184 7.3084 0.7708 13 6 3.4630 6.0628 0.7869 14 6 2.3112 5.8752 1.5756 15 1 1.5475 5.1802 1.2594 16 6 2.1565 6.5899 2.7700 17 7 0.9761 6.6894 3.3243 18 14 3.6361 7.4010 3.5715 19 1 3.7079 8.8239 3.1527 20 1 3.5021 7.3259 5.0485 21 1 4.8746 6.6979 3.1505 22 6 2.9858 3.0571 1.2091 23 6 2.3611 1.8281 1.2051 24 17 1.9653 1.0518 2.7066 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 3.2298 3.5364 -2.1457 29 1 5.5181 4.4017 -1.3671 30 1 6.6170 6.5968 -1.3681 31 1 5.7315 8.4405 -0.0042 32 1 3.7388 8.1261 1.3656 33 1 0.8687 7.1847 4.1514 34 1 3.2293 3.5368 2.1456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204829888.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:05 Heat of formation + Delta-G solvation = -22.644638 kcal Electronic energy + Delta-G solvation = -21945.704043 eV Core-core repulsion = 18473.546710 eV Total energy + Delta-G solvation = -3472.157333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17819 -39.78259 -38.18076 -37.76516 -37.22970 -35.56468 -33.01911 -32.37643 -31.60141 -29.81607 -27.83148 -26.87355 -24.25085 -23.86335 -22.84893 -21.58836 -19.39880 -19.03885 -18.06320 -17.62147 -17.04787 -16.72512 -16.09313 -15.78224 -15.53949 -15.35608 -15.13310 -14.98531 -14.51836 -14.24636 -13.88505 -13.71409 -13.38267 -13.28151 -12.86956 -12.78902 -12.72022 -12.55407 -12.29595 -12.12865 -12.08460 -11.86688 -11.57954 -11.41912 -11.05512 -11.00289 -9.96399 -9.78629 -9.45908 -9.06040 -8.90101 -6.45423 -0.25645 -0.00962 0.74314 0.79312 0.89396 1.25096 1.27414 1.41314 1.48668 2.10167 2.23919 2.62674 2.71542 3.51000 3.74774 3.93515 4.15914 4.18920 4.30954 4.41270 4.43219 4.43474 4.45422 4.69747 4.73839 4.81909 4.91583 4.98571 5.07963 5.31860 5.37247 5.41556 5.59232 5.86718 5.92963 6.03362 6.24148 6.26376 6.41469 6.73607 6.83069 8.16249 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.005381 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.220715 B = 5202.676923 C = 6630.048984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.327 6.327 3 C 0.089 3.911 4 C -0.044 4.044 5 Cl -0.041 7.041 6 C -0.098 4.098 7 C 0.020 3.980 8 C -0.184 4.184 9 C -0.059 4.059 10 C -0.229 4.229 11 C -0.076 4.076 12 C -0.247 4.247 13 C 0.091 3.909 14 C -0.459 4.459 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.838 5.838 18 Si 0.952 3.048 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.250 1.250 22 C -0.079 4.079 23 C -0.050 4.050 24 Cl -0.053 7.053 25 H 0.124 0.876 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.155 0.845 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.293 0.707 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -7.941 -5.889 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.244 6.244 3 C 0.043 3.957 4 C -0.071 4.071 5 Cl -0.012 7.012 6 C -0.117 4.117 7 C 0.019 3.981 8 C -0.185 4.185 9 C -0.077 4.077 10 C -0.248 4.248 11 C -0.094 4.094 12 C -0.266 4.266 13 C 0.088 3.912 14 C -0.488 4.488 15 H 0.082 0.918 16 C -0.162 4.162 17 N -0.463 5.463 18 Si 0.776 3.224 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.173 1.173 22 C -0.098 4.098 23 C -0.078 4.078 24 Cl -0.024 7.024 25 H 0.143 0.857 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.173 0.827 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.482 -8.213 -5.689 10.294 hybrid contribution -0.301 0.597 0.824 1.061 sum 2.181 -7.615 -4.865 9.296 Atomic orbital electron populations 1.23246 0.77265 1.05129 1.00896 1.86022 1.21450 1.22852 1.94097 1.18050 1.00427 0.87973 0.89251 1.20979 1.04452 0.94815 0.86885 1.98343 1.92499 1.80675 1.29683 1.21324 0.98351 0.92916 0.99089 1.18638 0.95231 0.93012 0.91171 1.18649 0.99942 0.91397 1.08514 1.21076 0.93457 0.97256 0.95869 1.20808 1.03931 0.93660 1.06422 1.20836 0.94599 0.99065 0.94862 1.20906 1.01811 0.96786 1.07117 1.17795 0.91215 0.91003 0.91141 1.19313 1.03205 1.21287 1.05027 0.91829 1.26731 0.98579 0.93528 0.97387 1.69699 1.25004 1.33253 1.18393 0.85672 0.80321 0.79800 0.76572 1.18464 1.20900 1.17317 1.21263 0.96948 0.91777 0.99830 1.21084 1.04783 0.94853 0.87042 1.98338 1.92658 1.80540 1.30837 0.85750 0.93870 0.93044 0.82720 0.85399 0.84993 0.85719 0.88584 0.89632 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.13 113.37 1.26 1.93 16 2 O -0.33 -9.82 9.31 -91.93 -0.86 -10.68 16 3 C 0.09 2.96 5.72 22.65 0.13 3.09 16 4 C -0.04 -1.39 6.33 22.38 0.14 -1.25 16 5 Cl -0.04 -1.09 28.49 -2.72 -0.08 -1.17 16 6 C -0.10 -3.26 9.30 22.55 0.21 -3.05 16 7 C 0.02 0.78 4.94 -20.03 -0.10 0.68 16 8 C -0.18 -7.61 5.52 -19.61 -0.11 -7.72 16 9 C -0.06 -2.09 9.51 22.46 0.21 -1.87 16 10 C -0.23 -7.80 10.03 22.39 0.22 -7.58 16 11 C -0.08 -2.80 9.96 22.01 0.22 -2.58 16 12 C -0.25 -10.79 7.09 22.46 0.16 -10.63 16 13 C 0.09 4.26 5.09 -21.12 -0.11 4.15 16 14 C -0.46 -23.59 7.50 23.35 0.18 -23.41 16 15 H 0.06 3.57 7.03 -2.91 -0.02 3.55 16 16 C 0.05 2.71 5.41 85.28 0.46 3.17 16 17 N -0.84 -43.71 13.93 21.84 0.30 -43.41 16 18 Si 0.95 40.52 24.52 68.60 1.68 42.20 16 19 H -0.26 -10.48 6.72 99.48 0.67 -9.81 16 20 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 21 H -0.25 -10.78 6.85 99.48 0.68 -10.10 16 22 C -0.08 -3.15 7.86 22.55 0.18 -2.97 16 23 C -0.05 -1.82 6.33 22.37 0.14 -1.67 16 24 Cl -0.05 -1.76 28.49 -2.72 -0.08 -1.83 16 25 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.16 4.53 8.05 -2.91 -0.02 4.51 16 29 H 0.13 3.79 8.05 -2.92 -0.02 3.76 16 30 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.10 4.24 4.79 -2.91 -0.01 4.23 16 33 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 34 H 0.13 5.62 7.30 -2.91 -0.02 5.59 16 Total: -1.00 -54.16 321.19 5.26 -48.90 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.08 Total: 15.70 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 3.20 Total: -49.72 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.30 Total: -43.41 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.86 Total: -10.68 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.68 Total: 42.20 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.15 Total: -3.00 kcal Total: -54.16 5.26 -48.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204829888.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.258 kcal (2) G-P(sol) polarization free energy of solvation -54.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds