Wall clock time and date at job start Tue Mar 31 2020 12:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35864 * 117.00078 * 2 1 4 4 C 1.39469 * 119.78280 * 0.02562 * 3 2 1 5 5 C 1.37945 * 120.61981 * 179.73871 * 4 3 2 6 6 C 1.39162 * 120.16585 * 0.52002 * 5 4 3 7 7 C 1.47844 * 120.22280 * 179.73940 * 6 5 4 8 8 C 1.39654 * 120.13988 * 129.44779 * 7 6 5 9 9 C 1.38050 * 119.85701 * 179.74631 * 8 7 6 10 10 Cl 1.73605 * 119.92912 * 180.22900 * 9 8 7 11 11 C 1.38492 * 120.13715 * 0.53259 * 9 8 7 12 12 C 1.38491 * 120.28121 * 359.71734 * 11 9 8 13 13 Cl 1.73601 * 119.92973 * 179.97438 * 12 11 9 14 14 C 1.38041 * 120.13640 * 0.02713 * 12 11 9 15 15 C 1.41894 * 119.56035 * 359.46390 * 6 5 4 16 16 C 1.40894 * 120.30062 * 180.30216 * 15 6 5 17 17 H 1.08005 * 119.99898 * 333.82650 * 16 15 6 18 18 C 1.40045 * 120.00320 * 153.82693 * 16 15 6 19 19 N 1.30783 * 120.00148 * 344.21769 * 18 16 15 20 20 Si 1.86804 * 120.00421 * 164.21398 * 18 16 15 21 21 H 1.48500 * 109.47026 * 89.99594 * 20 18 16 22 22 H 1.48496 * 109.47377 * 210.00436 * 20 18 16 23 23 H 1.48506 * 109.46698 * 330.00128 * 20 18 16 24 24 C 1.37931 * 119.78581 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47100 * 59.99939 * 1 2 3 26 26 H 1.09007 * 109.46913 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47632 * 299.99831 * 1 2 3 28 28 H 1.07999 * 119.68713 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.91674 * 180.26201 * 5 4 3 30 30 H 1.07998 * 120.06918 * 359.97438 * 8 7 6 31 31 H 1.08000 * 119.85352 * 179.74590 * 11 9 8 32 32 H 1.08008 * 120.07138 * 179.97438 * 14 12 11 33 33 H 0.96997 * 120.00397 * 180.02562 * 19 18 16 34 34 H 1.08006 * 120.08581 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2818 2.3774 0.0005 5 6 1.8900 3.6155 0.0060 6 6 3.2783 3.7126 0.0000 7 6 3.9314 5.0390 0.0000 8 6 4.9338 5.3270 0.9289 9 6 5.5434 6.5655 0.9202 10 17 6.7938 6.9235 2.0702 11 6 5.1553 7.5252 0.0002 12 6 4.1583 7.2475 -0.9201 13 17 3.6785 8.4574 -2.0688 14 6 3.5447 6.0110 -0.9251 15 6 4.0628 2.5303 0.0000 16 6 5.4694 2.6105 0.0004 17 1 5.9609 3.4794 -0.4117 18 6 6.2304 1.5635 0.5353 19 7 5.6633 0.6681 1.3015 20 14 8.0554 1.4458 0.1544 21 1 8.8243 2.1971 1.1788 22 1 8.4731 0.0209 0.1681 23 1 8.3194 2.0261 -1.1869 24 6 3.4235 1.2776 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2039 2.3109 0.0014 29 1 1.2874 4.5116 0.0106 30 1 5.2338 4.5811 1.6500 31 1 5.6325 8.4940 0.0002 32 1 2.7670 5.7957 -1.6430 33 1 6.1904 -0.0568 1.6723 34 1 4.0097 0.3704 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222597613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:32 Heat of formation + Delta-G solvation = -19.748617 kcal Electronic energy + Delta-G solvation = -21627.637723 eV Core-core repulsion = 18155.605971 eV Total energy + Delta-G solvation = -3472.031752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.27976 -38.55400 -36.63498 -36.43124 -35.69486 -33.75728 -31.40177 -30.36100 -29.71314 -28.30757 -26.38757 -25.37329 -22.65071 -22.25094 -20.97901 -19.96521 -17.88600 -16.88894 -16.28084 -15.48498 -15.38456 -15.09039 -14.89361 -14.75088 -14.12109 -13.92244 -13.53064 -13.28480 -12.86874 -12.47110 -12.06204 -11.95617 -11.86812 -11.56649 -11.32897 -11.28230 -11.25817 -11.11545 -10.83588 -10.66785 -10.65557 -10.53508 -10.09457 -9.95564 -9.68760 -9.30491 -8.41728 -8.29203 -7.65784 -7.07303 -6.80034 -4.59422 1.43953 1.50389 2.12304 2.56955 2.65418 2.85177 3.00432 3.03769 3.11422 3.80822 4.00083 4.20697 4.44770 5.15342 5.39767 5.40725 5.51342 5.58466 5.65817 5.74336 5.83690 5.91304 5.99722 6.14401 6.24139 6.44771 6.60218 6.67620 6.81528 6.94580 7.03885 7.19495 7.25505 7.52945 7.62052 7.80416 7.87338 8.19771 8.57891 8.65096 8.73128 9.96445 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.005490 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.049775 B = 5098.892646 C = 7194.813749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.138 3.862 4 C -0.316 4.316 5 C -0.033 4.033 6 C -0.219 4.219 7 C 0.054 3.946 8 C -0.086 4.086 9 C -0.024 4.024 10 Cl -0.077 7.077 11 C -0.134 4.134 12 C -0.022 4.022 13 Cl -0.081 7.081 14 C -0.121 4.121 15 C 0.159 3.841 16 C -0.445 4.445 17 H 0.086 0.914 18 C 0.078 3.922 19 N -0.774 5.774 20 Si 0.903 3.097 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.192 4.192 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.286 0.714 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 6.586 -1.330 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.094 3.906 4 C -0.336 4.336 5 C -0.051 4.051 6 C -0.220 4.220 7 C 0.054 3.946 8 C -0.105 4.105 9 C -0.051 4.051 10 Cl -0.048 7.048 11 C -0.154 4.154 12 C -0.048 4.048 13 Cl -0.052 7.052 14 C -0.140 4.140 15 C 0.156 3.844 16 C -0.473 4.473 17 H 0.104 0.896 18 C -0.143 4.143 19 N -0.397 5.397 20 Si 0.727 3.273 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.212 4.212 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.108 6.319 -1.174 6.764 hybrid contribution 0.587 0.178 -0.070 0.618 sum -1.520 6.498 -1.244 6.788 Atomic orbital electron populations 1.22780 0.80599 1.02004 1.00593 1.86011 1.19650 1.29012 1.89602 1.19027 0.92472 0.82557 0.96562 1.20377 0.97512 0.92396 1.23292 1.20325 0.93033 0.95471 0.96264 1.18345 0.92157 0.90316 1.21186 1.18620 0.92460 0.92632 0.90916 1.21534 0.95378 0.94273 0.99315 1.20618 0.94489 0.95561 0.94416 1.98343 1.52211 1.94977 1.59317 1.20629 0.98952 0.99779 0.96017 1.20509 0.99123 0.90874 0.94333 1.98337 1.91303 1.56005 1.59598 1.21323 1.01341 0.91371 0.99987 1.17173 0.92683 0.88822 0.85686 1.19596 0.90947 1.03330 1.33458 0.89569 1.25977 1.01508 0.94163 0.92634 1.69795 1.38746 1.10644 1.20503 0.86357 0.81693 0.78637 0.80651 1.18993 1.19833 1.18108 1.20546 0.89386 0.99117 1.12189 0.93608 0.89823 0.93569 0.88344 0.88652 0.83500 0.85035 0.84993 0.90320 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 16 2 O -0.33 -6.87 10.48 -19.31 -0.20 -7.08 16 3 C 0.14 3.15 6.67 -39.24 -0.26 2.89 16 4 C -0.32 -6.59 9.02 -39.23 -0.35 -6.95 16 5 C -0.03 -0.67 9.49 -39.35 -0.37 -1.05 16 6 C -0.22 -4.81 5.52 -104.23 -0.58 -5.38 16 7 C 0.05 1.07 4.91 -104.91 -0.51 0.55 16 8 C -0.09 -1.65 7.77 -39.12 -0.30 -1.95 16 9 C -0.02 -0.41 6.31 -39.56 -0.25 -0.66 16 10 Cl -0.08 -1.19 28.95 -51.86 -1.50 -2.69 16 11 C -0.13 -2.09 9.61 -39.39 -0.38 -2.47 16 12 C -0.02 -0.34 6.31 -39.56 -0.25 -0.59 16 13 Cl -0.08 -1.12 28.95 -51.86 -1.50 -2.62 16 14 C -0.12 -2.11 9.30 -39.12 -0.36 -2.47 16 15 C 0.16 3.88 5.56 -106.59 -0.59 3.29 16 16 C -0.45 -10.68 7.14 -37.90 -0.27 -10.95 16 17 H 0.09 2.03 6.60 -52.48 -0.35 1.68 16 18 C 0.08 1.81 5.17 -17.32 -0.09 1.72 16 19 N -0.77 -18.65 10.94 55.55 0.61 -18.04 16 20 Si 0.90 17.72 29.59 -169.99 -5.03 12.69 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 24 C -0.19 -4.79 8.59 -38.79 -0.33 -5.12 16 25 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 28 H 0.10 1.80 6.25 -52.49 -0.33 1.47 16 29 H 0.10 1.73 8.04 -52.49 -0.42 1.30 16 30 H 0.15 3.02 7.32 -52.49 -0.38 2.64 16 31 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 2.17 8.05 -52.48 -0.42 1.74 16 33 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 34 H 0.13 3.37 6.20 -52.48 -0.33 3.05 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -24.77 323.66 -9.67 -34.44 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.00 Total: 6.02 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -3.92 Total: -27.60 kcal Atomic # 7 Polarization: -18.65 SS G_CDS: 0.61 Total: -18.04 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.20 Total: -7.08 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -3.00 Total: -5.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -24.77 -9.67 -34.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222597613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.694 kcal (2) G-P(sol) polarization free energy of solvation -24.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds