Wall clock time and date at job start Tue Mar 31 2020 12:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35864 * 117.00078 * 2 1 4 4 C 1.39469 * 119.78280 * 0.02562 * 3 2 1 5 5 C 1.37945 * 120.61981 * 179.73871 * 4 3 2 6 6 C 1.39162 * 120.16585 * 0.52002 * 5 4 3 7 7 C 1.47844 * 120.22280 * 179.73940 * 6 5 4 8 8 C 1.39654 * 120.13988 * 129.44779 * 7 6 5 9 9 C 1.38050 * 119.85701 * 179.74631 * 8 7 6 10 10 Cl 1.73605 * 119.92912 * 180.22900 * 9 8 7 11 11 C 1.38492 * 120.13715 * 0.53259 * 9 8 7 12 12 C 1.38491 * 120.28121 * 359.71734 * 11 9 8 13 13 Cl 1.73601 * 119.92973 * 179.97438 * 12 11 9 14 14 C 1.38041 * 120.13640 * 0.02713 * 12 11 9 15 15 C 1.41894 * 119.56035 * 359.46390 * 6 5 4 16 16 C 1.40894 * 120.30062 * 180.30216 * 15 6 5 17 17 H 1.08005 * 119.99898 * 333.82650 * 16 15 6 18 18 C 1.40045 * 120.00320 * 153.82693 * 16 15 6 19 19 N 1.30783 * 120.00148 * 344.21769 * 18 16 15 20 20 Si 1.86804 * 120.00421 * 164.21398 * 18 16 15 21 21 H 1.48500 * 109.47026 * 89.99594 * 20 18 16 22 22 H 1.48496 * 109.47377 * 210.00436 * 20 18 16 23 23 H 1.48506 * 109.46698 * 330.00128 * 20 18 16 24 24 C 1.37931 * 119.78581 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47100 * 59.99939 * 1 2 3 26 26 H 1.09007 * 109.46913 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47632 * 299.99831 * 1 2 3 28 28 H 1.07999 * 119.68713 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.91674 * 180.26201 * 5 4 3 30 30 H 1.07998 * 120.06918 * 359.97438 * 8 7 6 31 31 H 1.08000 * 119.85352 * 179.74590 * 11 9 8 32 32 H 1.08008 * 120.07138 * 179.97438 * 14 12 11 33 33 H 0.96997 * 120.00397 * 180.02562 * 19 18 16 34 34 H 1.08006 * 120.08581 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2818 2.3774 0.0005 5 6 1.8900 3.6155 0.0060 6 6 3.2783 3.7126 0.0000 7 6 3.9314 5.0390 0.0000 8 6 4.9338 5.3270 0.9289 9 6 5.5434 6.5655 0.9202 10 17 6.7938 6.9235 2.0702 11 6 5.1553 7.5252 0.0002 12 6 4.1583 7.2475 -0.9201 13 17 3.6785 8.4574 -2.0688 14 6 3.5447 6.0110 -0.9251 15 6 4.0628 2.5303 0.0000 16 6 5.4694 2.6105 0.0004 17 1 5.9609 3.4794 -0.4117 18 6 6.2304 1.5635 0.5353 19 7 5.6633 0.6681 1.3015 20 14 8.0554 1.4458 0.1544 21 1 8.8243 2.1971 1.1788 22 1 8.4731 0.0209 0.1681 23 1 8.3194 2.0261 -1.1869 24 6 3.4235 1.2776 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2039 2.3109 0.0014 29 1 1.2874 4.5116 0.0106 30 1 5.2338 4.5811 1.6500 31 1 5.6325 8.4940 0.0002 32 1 2.7670 5.7957 -1.6430 33 1 6.1904 -0.0568 1.6723 34 1 4.0097 0.3704 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222597613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:31 Heat of formation + Delta-G solvation = -29.159815 kcal Electronic energy + Delta-G solvation = -21628.045823 eV Core-core repulsion = 18155.605971 eV Total energy + Delta-G solvation = -3472.439852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80030 -40.03782 -38.14950 -37.67695 -37.03396 -35.46618 -32.88011 -31.88160 -31.27210 -29.81158 -27.82258 -27.03626 -24.12899 -23.67561 -22.62448 -21.52809 -19.55751 -18.27001 -17.98067 -17.00795 -16.77143 -16.61162 -16.34269 -16.24736 -15.63348 -15.23511 -14.91528 -14.85903 -14.45416 -14.04450 -13.54653 -13.29860 -13.25466 -13.10534 -12.84707 -12.76723 -12.67699 -12.56877 -12.31905 -12.04623 -11.99506 -11.88605 -11.60286 -11.54389 -11.31550 -11.01241 -9.82197 -9.63767 -9.40102 -8.78564 -8.47442 -6.38429 0.04566 0.13361 0.85045 0.95698 1.09783 1.37586 1.37987 1.47159 1.52402 2.17502 2.57329 2.70230 2.78168 3.67041 3.82720 4.07570 4.13379 4.29237 4.33657 4.48098 4.49499 4.54072 4.58727 4.75486 4.77728 5.01957 5.09028 5.11913 5.20473 5.28887 5.49700 5.55251 5.66613 5.88399 5.92691 6.09282 6.13685 6.45481 6.86536 6.90085 7.02318 8.26924 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.005490 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.049775 B = 5098.892646 C = 7194.813749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.133 3.867 4 C -0.314 4.314 5 C -0.036 4.036 6 C -0.222 4.222 7 C 0.032 3.968 8 C -0.098 4.098 9 C -0.026 4.026 10 Cl -0.064 7.064 11 C -0.120 4.120 12 C -0.020 4.020 13 Cl -0.055 7.055 14 C -0.116 4.116 15 C 0.135 3.865 16 C -0.466 4.466 17 H 0.082 0.918 18 C 0.043 3.957 19 N -0.809 5.809 20 Si 0.962 3.038 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.228 4.228 25 H 0.059 0.941 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.289 0.711 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 8.708 -2.029 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.088 3.912 4 C -0.333 4.333 5 C -0.054 4.054 6 C -0.223 4.223 7 C 0.032 3.968 8 C -0.117 4.117 9 C -0.053 4.053 10 Cl -0.035 7.035 11 C -0.139 4.139 12 C -0.047 4.047 13 Cl -0.026 7.026 14 C -0.135 4.135 15 C 0.132 3.868 16 C -0.495 4.495 17 H 0.100 0.900 18 C -0.174 4.174 19 N -0.434 5.434 20 Si 0.783 3.217 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.249 4.249 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.100 0.900 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.807 8.445 -1.874 9.094 hybrid contribution 0.644 -0.365 0.126 0.751 sum -2.163 8.079 -1.748 8.545 Atomic orbital electron populations 1.23156 0.77518 1.04549 1.01609 1.85975 1.22868 1.28418 1.89369 1.19148 0.92181 0.83966 0.95875 1.20706 0.98946 0.91688 1.21978 1.20691 0.92838 0.96607 0.95303 1.18636 0.92925 0.90837 1.19911 1.18541 0.93501 0.92345 0.92459 1.21329 0.96110 0.94841 0.99376 1.20635 0.94593 0.95033 0.94991 1.98347 1.51498 1.94769 1.58876 1.20918 0.98094 1.00286 0.94642 1.20544 0.98604 0.90936 0.94592 1.98351 1.91054 1.54663 1.58535 1.21352 1.01397 0.91385 0.99377 1.17483 0.93397 0.89622 0.86317 1.19664 0.91296 1.03840 1.34649 0.89982 1.26662 1.05095 0.93607 0.92079 1.69864 1.40231 1.11502 1.21786 0.85474 0.77118 0.78808 0.80255 1.18413 1.19156 1.18172 1.20484 0.90599 0.98584 1.15194 0.92256 0.86730 0.92680 0.85326 0.85677 0.85980 0.82380 0.84027 0.89979 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.35 -14.80 10.48 -92.02 -0.96 -15.76 16 3 C 0.13 6.18 6.67 22.49 0.15 6.33 16 4 C -0.31 -12.78 9.02 22.50 0.20 -12.57 16 5 C -0.04 -1.46 9.49 22.42 0.21 -1.25 16 6 C -0.22 -9.89 5.52 -19.61 -0.11 -10.00 16 7 C 0.03 1.26 4.91 -20.05 -0.10 1.16 16 8 C -0.10 -3.76 7.77 22.57 0.18 -3.58 16 9 C -0.03 -0.84 6.31 22.29 0.14 -0.69 16 10 Cl -0.06 -1.88 28.95 -2.72 -0.08 -1.96 16 11 C -0.12 -3.42 9.61 22.39 0.22 -3.21 16 12 C -0.02 -0.58 6.31 22.28 0.14 -0.44 16 13 Cl -0.05 -1.33 28.95 -2.72 -0.08 -1.41 16 14 C -0.12 -3.84 9.30 22.57 0.21 -3.63 16 15 C 0.13 6.85 5.56 -21.14 -0.12 6.73 16 16 C -0.47 -23.45 7.14 23.36 0.17 -23.28 16 17 H 0.08 4.04 6.60 -2.91 -0.02 4.02 16 18 C 0.04 2.08 5.17 85.29 0.44 2.52 16 19 N -0.81 -41.26 10.94 21.84 0.24 -41.02 16 20 Si 0.96 37.41 29.59 68.60 2.03 39.44 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 C -0.23 -11.96 8.59 22.78 0.20 -11.76 16 25 H 0.06 1.53 7.65 -2.39 -0.02 1.51 16 26 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.05 1.47 7.64 -2.39 -0.02 1.45 16 28 H 0.13 4.36 6.25 -2.91 -0.02 4.34 16 29 H 0.13 4.22 8.04 -2.91 -0.02 4.20 16 30 H 0.12 5.27 7.32 -2.91 -0.02 5.25 16 31 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.14 4.34 8.05 -2.91 -0.02 4.32 16 33 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 34 H 0.10 5.78 6.20 -2.91 -0.02 5.76 16 Total: -1.00 -55.72 323.66 5.33 -50.39 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 1.15 Total: 22.14 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 3.04 Total: -51.82 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.24 Total: -41.02 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.96 Total: -15.76 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.16 Total: -3.37 kcal Total: -55.72 5.33 -50.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222597613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.230 kcal (2) G-P(sol) polarization free energy of solvation -55.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds