Wall clock time and date at job start Tue Mar 31 2020 12:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35613 * 116.99615 * 2 1 4 4 C 1.39136 * 119.88459 * 0.26392 * 3 2 1 5 5 C 1.36424 * 120.43846 * 180.24981 * 4 3 2 6 6 C 1.40911 * 120.18720 * 359.74609 * 5 4 3 7 7 C 1.41243 * 120.11784 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00017 * 330.10099 * 7 6 5 9 9 C 1.39860 * 119.99935 * 150.10560 * 7 6 5 10 10 N 1.30896 * 120.00027 * 161.65945 * 9 7 6 11 11 Si 1.86799 * 120.00097 * 341.66381 * 9 7 6 12 12 H 1.48501 * 109.47186 * 95.41472 * 11 9 7 13 13 H 1.48502 * 109.47234 * 215.41405 * 11 9 7 14 14 H 1.48498 * 109.46970 * 335.41436 * 11 9 7 15 15 C 1.40618 * 119.76488 * 359.97438 * 6 5 4 16 16 C 1.38597 * 119.56779 * 0.02562 * 15 6 5 17 17 C 1.48322 * 120.09995 * 179.97438 * 16 15 6 18 18 C 1.39383 * 120.11351 * 65.26200 * 17 16 15 19 19 C 1.37970 * 119.89752 * 180.27859 * 18 17 16 20 20 C 1.38478 * 120.13611 * 359.46025 * 19 18 17 21 21 Cl 1.73601 * 119.87843 * 180.25210 * 20 19 18 22 22 C 1.38395 * 120.23977 * 0.27319 * 20 19 18 23 23 C 1.38133 * 120.09481 * 359.97438 * 22 20 19 24 24 Cl 1.73599 * 120.06901 * 180.02562 * 23 22 20 25 25 H 1.09004 * 109.47120 * 299.99172 * 1 2 3 26 26 H 1.08998 * 109.47813 * 59.99527 * 1 2 3 27 27 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.78494 * 359.97357 * 4 3 2 29 29 H 1.07999 * 119.90496 * 179.71441 * 5 4 3 30 30 H 0.96993 * 120.00038 * 179.97438 * 10 9 7 31 31 H 1.07993 * 120.21943 * 180.02562 * 15 6 5 32 32 H 1.07995 * 120.05150 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.93380 * 179.73531 * 19 18 17 34 34 H 1.07995 * 119.95793 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2844 2.3737 0.0056 5 6 1.8919 3.5952 0.0005 6 6 3.2979 3.6873 -0.0050 7 6 3.9253 4.9527 -0.0097 8 1 3.4370 5.7958 -0.4756 9 6 5.1790 5.1139 0.5889 10 7 5.9188 6.1513 0.2893 11 14 5.7978 3.8485 1.8158 12 1 6.6617 2.8630 1.1175 13 1 6.5821 4.5301 2.8768 14 1 4.6416 3.1466 2.4286 15 6 4.0743 2.5148 -0.0048 16 6 3.4468 1.2790 0.0004 17 6 4.2541 0.0348 0.0001 18 6 5.0622 -0.2747 1.0929 19 6 5.8157 -1.4304 1.0855 20 6 5.7622 -2.2884 -0.0002 21 17 6.7082 -3.7440 0.0004 22 6 4.9575 -1.9894 -1.0858 23 6 4.2029 -0.8324 -1.0908 24 17 3.1934 -0.4584 -2.4527 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2062 2.3109 0.0094 29 1 1.2934 4.4942 0.0002 30 1 6.7881 6.2633 0.7047 31 1 5.1524 2.5768 -0.0086 32 1 5.1015 0.3911 1.9422 33 1 6.4453 -1.6686 1.9300 34 1 4.9189 -2.6620 -1.9298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235964298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:10 Heat of formation + Delta-G solvation = -9.693218 kcal Electronic energy + Delta-G solvation = -22061.972219 eV Core-core repulsion = 18590.376502 eV Total energy + Delta-G solvation = -3471.595717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.67163 -38.58233 -36.72279 -36.47957 -35.96708 -33.48037 -32.12635 -30.79436 -29.94024 -28.47239 -26.97443 -24.57927 -23.13605 -22.64427 -21.17411 -20.16142 -17.73321 -17.35302 -16.90912 -15.73793 -15.51401 -15.30955 -14.93271 -14.88273 -14.20001 -13.74972 -13.66085 -13.39463 -13.15394 -12.84609 -12.60475 -12.16274 -11.99216 -11.93489 -11.69714 -11.47163 -11.12516 -10.93362 -10.87241 -10.81320 -10.58866 -10.35030 -10.22914 -10.00797 -9.63786 -9.16370 -8.83060 -8.51273 -7.81845 -7.24691 -6.95844 -4.44095 1.09027 1.24519 1.95984 2.34023 2.53260 2.55471 3.05088 3.14615 3.24187 3.62377 3.93364 4.10528 4.35976 4.83444 4.96134 5.04030 5.25646 5.40380 5.48560 5.53893 5.57468 5.71025 5.80976 5.85991 6.02076 6.14672 6.25627 6.43540 6.46499 6.63957 6.70127 6.85307 7.06722 7.24544 7.41212 7.65830 7.81894 8.21630 8.32488 8.58724 8.76169 10.07451 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.005733 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.612266 B = 4882.821219 C = 6416.378655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.029 3.971 4 C -0.161 4.161 5 C -0.162 4.162 6 C 0.071 3.929 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.085 3.915 10 N -0.811 5.811 11 Si 0.897 3.103 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.243 1.243 15 C -0.186 4.186 16 C -0.053 4.053 17 C 0.009 3.991 18 C -0.092 4.092 19 C -0.108 4.108 20 C -0.036 4.036 21 Cl -0.074 7.074 22 C -0.107 4.107 23 C -0.006 4.006 24 Cl -0.047 7.047 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.284 0.716 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 -14.232 0.585 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.234 6.234 3 C -0.015 4.015 4 C -0.179 4.179 5 C -0.181 4.181 6 C 0.068 3.932 7 C -0.478 4.478 8 H 0.109 0.891 9 C -0.133 4.133 10 N -0.435 5.435 11 Si 0.723 3.277 12 H -0.193 1.193 13 H -0.216 1.216 14 H -0.166 1.166 15 C -0.206 4.206 16 C -0.054 4.054 17 C 0.008 3.992 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.062 4.062 21 Cl -0.045 7.045 22 C -0.126 4.126 23 C -0.033 4.033 24 Cl -0.018 7.018 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.142 -14.306 0.461 14.473 hybrid contribution 0.165 -0.282 0.383 0.503 sum -1.977 -14.588 0.844 14.746 Atomic orbital electron populations 1.22746 0.80705 1.02028 1.00369 1.85891 1.19219 1.27703 1.90565 1.18350 0.90221 0.83489 1.09407 1.20493 0.97953 0.92678 1.06820 1.20732 0.94539 0.95561 1.07285 1.17583 0.91499 0.92713 0.91435 1.19336 1.00840 0.95504 1.32126 0.89116 1.26080 0.95180 0.95783 0.96280 1.69717 1.09896 1.28076 1.35848 0.86522 0.80066 0.80662 0.80418 1.19260 1.21626 1.16581 1.20893 0.98262 0.90519 1.10907 1.17485 0.89124 0.90995 1.07772 1.18875 0.94869 0.93726 0.91768 1.21233 0.95385 0.96328 0.98059 1.20997 1.00099 0.93925 0.97632 1.20641 0.98428 0.90376 0.96784 1.98351 1.71443 1.36083 1.98612 1.20733 0.96735 0.96669 0.98479 1.20795 0.96323 0.95362 0.90801 1.98365 1.67234 1.94214 1.41984 0.93821 0.93766 0.89853 0.87670 0.87645 0.90526 0.87232 0.84422 0.84604 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 9.80 101.05 0.99 1.50 16 2 O -0.32 -5.74 8.87 -18.54 -0.16 -5.91 16 3 C 0.03 0.59 5.96 -38.44 -0.23 0.36 16 4 C -0.16 -3.18 8.95 -39.90 -0.36 -3.54 16 5 C -0.16 -3.54 9.72 -39.22 -0.38 -3.92 16 6 C 0.07 1.71 5.10 -106.85 -0.55 1.16 16 7 C -0.45 -11.74 9.55 -37.83 -0.36 -12.10 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.08 2.17 5.40 -17.34 -0.09 2.08 16 10 N -0.81 -21.29 13.93 55.54 0.77 -20.51 16 11 Si 0.90 19.92 24.52 -169.99 -4.17 15.75 16 12 H -0.27 -5.74 6.70 56.52 0.38 -5.36 16 13 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.24 -5.39 6.87 56.52 0.39 -5.00 16 15 C -0.19 -4.32 6.84 -38.55 -0.26 -4.58 16 16 C -0.05 -1.12 4.67 -104.80 -0.49 -1.61 16 17 C 0.01 0.16 4.94 -104.87 -0.52 -0.36 16 18 C -0.09 -1.52 9.73 -39.25 -0.38 -1.91 16 19 C -0.11 -1.52 9.81 -39.59 -0.39 -1.91 16 20 C -0.04 -0.49 6.32 -39.44 -0.25 -0.74 16 21 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16 22 C -0.11 -1.56 9.60 -39.56 -0.38 -1.94 16 23 C -0.01 -0.10 6.07 -39.16 -0.24 -0.33 16 24 Cl -0.05 -0.80 26.60 -51.86 -1.38 -2.18 16 25 H 0.04 0.56 7.64 -51.93 -0.40 0.17 16 26 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.11 1.77 6.26 -52.48 -0.33 1.45 16 29 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 31 H 0.11 2.58 4.73 -52.49 -0.25 2.33 16 32 H 0.14 2.22 8.06 -52.49 -0.42 1.79 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -26.73 319.04 -8.60 -35.33 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.08 Total: 2.92 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -3.89 Total: -27.84 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.77 Total: -20.51 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.16 Total: -5.91 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.17 Total: 15.75 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -2.88 Total: -4.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.73 -8.60 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235964298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.636 kcal (2) G-P(sol) polarization free energy of solvation -26.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds