Wall clock time and date at job start Tue Mar 31 2020 12:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35613 * 116.99615 * 2 1 4 4 C 1.39136 * 119.88459 * 0.26392 * 3 2 1 5 5 C 1.36424 * 120.43846 * 180.24981 * 4 3 2 6 6 C 1.40911 * 120.18720 * 359.74609 * 5 4 3 7 7 C 1.41243 * 120.11784 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00017 * 330.10099 * 7 6 5 9 9 C 1.39860 * 119.99935 * 150.10560 * 7 6 5 10 10 N 1.30896 * 120.00027 * 161.65945 * 9 7 6 11 11 Si 1.86799 * 120.00097 * 341.66381 * 9 7 6 12 12 H 1.48501 * 109.47186 * 95.41472 * 11 9 7 13 13 H 1.48502 * 109.47234 * 215.41405 * 11 9 7 14 14 H 1.48498 * 109.46970 * 335.41436 * 11 9 7 15 15 C 1.40618 * 119.76488 * 359.97438 * 6 5 4 16 16 C 1.38597 * 119.56779 * 0.02562 * 15 6 5 17 17 C 1.48322 * 120.09995 * 179.97438 * 16 15 6 18 18 C 1.39383 * 120.11351 * 65.26200 * 17 16 15 19 19 C 1.37970 * 119.89752 * 180.27859 * 18 17 16 20 20 C 1.38478 * 120.13611 * 359.46025 * 19 18 17 21 21 Cl 1.73601 * 119.87843 * 180.25210 * 20 19 18 22 22 C 1.38395 * 120.23977 * 0.27319 * 20 19 18 23 23 C 1.38133 * 120.09481 * 359.97438 * 22 20 19 24 24 Cl 1.73599 * 120.06901 * 180.02562 * 23 22 20 25 25 H 1.09004 * 109.47120 * 299.99172 * 1 2 3 26 26 H 1.08998 * 109.47813 * 59.99527 * 1 2 3 27 27 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.78494 * 359.97357 * 4 3 2 29 29 H 1.07999 * 119.90496 * 179.71441 * 5 4 3 30 30 H 0.96993 * 120.00038 * 179.97438 * 10 9 7 31 31 H 1.07993 * 120.21943 * 180.02562 * 15 6 5 32 32 H 1.07995 * 120.05150 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.93380 * 179.73531 * 19 18 17 34 34 H 1.07995 * 119.95793 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2844 2.3737 0.0056 5 6 1.8919 3.5952 0.0005 6 6 3.2979 3.6873 -0.0050 7 6 3.9253 4.9527 -0.0097 8 1 3.4370 5.7958 -0.4756 9 6 5.1790 5.1139 0.5889 10 7 5.9188 6.1513 0.2893 11 14 5.7978 3.8485 1.8158 12 1 6.6617 2.8630 1.1175 13 1 6.5821 4.5301 2.8768 14 1 4.6416 3.1466 2.4286 15 6 4.0743 2.5148 -0.0048 16 6 3.4468 1.2790 0.0004 17 6 4.2541 0.0348 0.0001 18 6 5.0622 -0.2747 1.0929 19 6 5.8157 -1.4304 1.0855 20 6 5.7622 -2.2884 -0.0002 21 17 6.7082 -3.7440 0.0004 22 6 4.9575 -1.9894 -1.0858 23 6 4.2029 -0.8324 -1.0908 24 17 3.1934 -0.4584 -2.4527 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2062 2.3109 0.0094 29 1 1.2934 4.4942 0.0002 30 1 6.7881 6.2633 0.7047 31 1 5.1524 2.5768 -0.0086 32 1 5.1015 0.3911 1.9422 33 1 6.4453 -1.6686 1.9300 34 1 4.9189 -2.6620 -1.9298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235964298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:10 Heat of formation + Delta-G solvation = -22.207048 kcal Electronic energy + Delta-G solvation = -22062.514859 eV Core-core repulsion = 18590.376502 eV Total energy + Delta-G solvation = -3472.138358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.027 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08993 -39.91996 -38.21966 -37.68854 -37.19077 -35.28154 -33.58389 -31.99414 -31.67221 -29.87248 -28.29851 -26.30082 -24.51635 -23.86541 -22.77798 -21.71429 -19.40073 -18.88692 -18.21594 -17.16362 -17.00530 -16.71909 -16.46723 -16.17239 -15.54913 -14.99177 -14.95529 -14.92933 -14.74203 -14.46530 -14.14849 -13.64286 -13.31075 -13.24174 -12.98443 -12.84597 -12.68157 -12.46949 -12.18466 -11.98351 -11.97735 -11.93743 -11.80338 -11.60513 -11.30246 -10.95012 -10.05098 -9.85157 -9.38259 -8.92793 -8.84601 -6.36756 -0.16222 0.06013 0.68368 0.80346 0.83726 1.25623 1.33157 1.37958 1.47518 2.12839 2.38199 2.58739 2.73482 3.39975 3.62109 3.70843 3.96252 4.13585 4.21724 4.27550 4.41367 4.52401 4.57522 4.65452 4.71988 4.80625 4.87602 4.93040 5.01560 5.11714 5.23650 5.37455 5.48119 5.52366 5.70956 5.87130 6.08197 6.32631 6.60158 6.82280 6.93231 8.24608 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.005733 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.612266 B = 4882.821219 C = 6416.378655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.325 6.325 3 C 0.050 3.950 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.048 3.952 7 C -0.484 4.484 8 H 0.057 0.943 9 C 0.048 3.952 10 N -0.857 5.857 11 Si 0.947 3.053 12 H -0.257 1.257 13 H -0.279 1.279 14 H -0.245 1.245 15 C -0.192 4.192 16 C -0.060 4.060 17 C -0.022 4.022 18 C -0.102 4.102 19 C -0.098 4.098 20 C -0.031 4.031 21 Cl -0.049 7.049 22 C -0.102 4.102 23 C -0.016 4.016 24 Cl -0.054 7.054 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.140 0.860 29 H 0.112 0.888 30 H 0.290 0.710 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -18.062 1.320 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.240 6.240 3 C 0.006 3.994 4 C -0.180 4.180 5 C -0.187 4.187 6 C 0.046 3.954 7 C -0.514 4.514 8 H 0.075 0.925 9 C -0.165 4.165 10 N -0.484 5.484 11 Si 0.771 3.229 12 H -0.182 1.182 13 H -0.205 1.205 14 H -0.169 1.169 15 C -0.211 4.211 16 C -0.061 4.061 17 C -0.023 4.023 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.058 4.058 21 Cl -0.020 7.020 22 C -0.121 4.121 23 C -0.043 4.043 24 Cl -0.025 7.025 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.156 0.844 33 H 0.183 0.817 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.645 -18.154 1.191 18.384 hybrid contribution 0.121 0.598 0.092 0.617 sum -2.524 -17.556 1.283 17.783 Atomic orbital electron populations 1.23123 0.78090 1.04466 1.01280 1.85909 1.21836 1.26287 1.89932 1.18559 0.90320 0.84455 1.06100 1.20814 0.99818 0.91639 1.05686 1.20913 0.93863 0.96967 1.06994 1.17689 0.92723 0.92334 0.92646 1.19305 1.02025 0.95635 1.34480 0.92477 1.26708 0.95109 0.97375 0.97322 1.69759 1.10801 1.30046 1.37810 0.85754 0.79613 0.78866 0.78706 1.18221 1.20539 1.16850 1.20876 0.97899 0.91149 1.11183 1.17692 0.90119 0.91409 1.06881 1.18867 0.96410 0.93517 0.93519 1.21327 0.95663 0.97417 0.97647 1.21269 0.99247 0.92655 0.98472 1.20771 0.97824 0.90984 0.96246 1.98368 1.70645 1.34496 1.98532 1.20946 0.95846 0.95973 0.99323 1.20868 0.97089 0.96050 0.90343 1.98357 1.67545 1.94371 1.42203 0.92668 0.92945 0.86873 0.84221 0.87028 0.89931 0.88146 0.84431 0.81678 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.80 113.37 1.11 1.70 16 2 O -0.32 -10.73 8.87 -89.24 -0.79 -11.52 16 3 C 0.05 1.93 5.96 23.01 0.14 2.07 16 4 C -0.16 -6.09 8.95 22.06 0.20 -5.90 16 5 C -0.17 -7.39 9.72 22.50 0.22 -7.17 16 6 C 0.05 2.41 5.10 -21.31 -0.11 2.30 16 7 C -0.48 -26.87 9.55 23.40 0.22 -26.65 16 8 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 9 C 0.05 2.58 5.40 85.22 0.46 3.04 16 10 N -0.86 -47.41 13.93 21.81 0.30 -47.10 16 11 Si 0.95 41.96 24.52 68.60 1.68 43.64 16 12 H -0.26 -10.81 6.70 99.48 0.67 -10.15 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.25 -10.78 6.87 99.48 0.68 -10.10 16 15 C -0.19 -8.96 6.84 22.94 0.16 -8.80 16 16 C -0.06 -2.48 4.67 -19.98 -0.09 -2.58 16 17 C -0.02 -0.79 4.94 -20.02 -0.10 -0.89 16 18 C -0.10 -3.18 9.73 22.48 0.22 -2.96 16 19 C -0.10 -2.43 9.81 22.26 0.22 -2.22 16 20 C -0.03 -0.76 6.32 22.36 0.14 -0.62 16 21 Cl -0.05 -0.99 28.95 -2.72 -0.08 -1.07 16 22 C -0.10 -2.67 9.60 22.28 0.21 -2.45 16 23 C -0.02 -0.53 6.07 22.54 0.14 -0.39 16 24 Cl -0.05 -1.73 26.60 -2.72 -0.07 -1.80 16 25 H 0.05 1.19 7.64 -2.39 -0.02 1.18 16 26 H 0.05 1.17 7.66 -2.39 -0.02 1.15 16 27 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.14 4.25 6.26 -2.91 -0.02 4.23 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 31 H 0.10 4.81 4.73 -2.91 -0.01 4.79 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -60.08 319.04 5.26 -54.82 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.08 Total: 14.54 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 3.13 Total: -51.51 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.30 Total: -47.10 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.79 Total: -11.52 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.15 Total: -2.87 kcal Total: -60.08 5.26 -54.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235964298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.615 kcal (2) G-P(sol) polarization free energy of solvation -60.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds