Wall clock time and date at job start Tue Mar 31 2020 12:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 102.99776 * 2 1 4 4 C 1.39240 * 119.93957 * 359.97438 * 3 2 1 5 5 C 1.37646 * 120.08096 * 179.97438 * 4 3 2 6 6 C 1.39825 * 119.95163 * 0.02562 * 5 4 3 7 7 C 1.47698 * 120.06214 * 180.02562 * 6 5 4 8 8 C 1.39193 * 120.32763 * 309.72655 * 7 6 5 9 9 C 1.38280 * 119.94962 * 179.74117 * 8 7 6 10 10 F 1.35100 * 119.68688 * 180.27377 * 9 8 7 11 11 C 1.39279 * 120.62658 * 0.53542 * 9 8 7 12 12 C 1.36309 * 120.67297 * 359.71817 * 11 9 8 13 13 C 1.40807 * 120.02723 * 0.02562 * 12 11 9 14 14 C 1.40759 * 120.30765 * 179.97438 * 13 12 11 15 15 H 1.08010 * 120.00126 * 152.08088 * 14 13 12 16 16 C 1.39978 * 120.00305 * 332.07883 * 14 13 12 17 17 N 1.30839 * 120.00274 * 346.59911 * 16 14 13 18 18 Si 1.86810 * 120.00120 * 166.59509 * 16 14 13 19 19 H 1.48502 * 109.46948 * 89.99924 * 18 16 14 20 20 H 1.48489 * 109.47265 * 210.00207 * 18 16 14 21 21 H 1.48508 * 109.47030 * 330.00453 * 18 16 14 22 22 C 1.39804 * 119.87932 * 359.76755 * 6 5 4 23 23 C 1.37744 * 119.91901 * 0.48617 * 22 6 5 24 24 Cl 1.73600 * 119.97910 * 179.76954 * 23 22 6 25 25 H 1.08998 * 109.47267 * 299.99501 * 1 2 3 26 26 H 1.08995 * 109.47504 * 59.99863 * 1 2 3 27 27 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.96080 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.02197 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.02765 * 359.97438 * 8 7 6 31 31 H 1.07990 * 119.66235 * 179.74238 * 11 9 8 32 32 H 1.07996 * 119.98611 * 180.02562 * 12 11 9 33 33 H 0.96996 * 120.00130 * 180.02562 * 17 16 14 34 34 H 1.08004 * 120.04333 * 180.24919 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1909 2.6654 -0.0005 5 6 1.4972 4.0073 0.0000 6 6 2.8337 4.4183 0.0005 7 6 3.1651 5.8577 0.0017 8 6 2.5746 6.7156 -0.9218 9 6 2.8865 8.0627 -0.9103 10 9 2.3061 8.8916 -1.8055 11 6 3.7974 8.5722 0.0119 12 6 4.3946 7.7542 0.9243 13 6 4.0934 6.3789 0.9410 14 6 4.7069 5.5287 1.8802 15 1 4.2000 4.6342 2.2111 16 6 5.9741 5.8424 2.3854 17 7 6.6992 6.7649 1.8065 18 14 6.6301 4.9440 3.8862 19 1 7.3755 3.7350 3.4527 20 1 7.5396 5.8418 4.6422 21 1 5.4963 4.5408 4.7565 22 6 3.8557 3.4644 0.0055 23 6 3.5434 2.1229 -0.0004 24 17 4.8113 0.9371 -0.0003 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.1586 2.3477 -0.0005 29 1 0.7057 4.7422 0.0000 30 1 1.8706 6.3301 -1.6444 31 1 4.0327 9.6262 0.0043 32 1 5.0989 8.1612 1.6346 33 1 7.5774 6.9821 2.1564 34 1 4.8889 3.7790 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244736594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:12 Heat of formation + Delta-G solvation = -22.458696 kcal Electronic energy + Delta-G solvation = -21513.915516 eV Core-core repulsion = 18056.182741 eV Total energy + Delta-G solvation = -3457.732774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.029 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.59622 -39.05275 -37.29425 -36.03706 -33.84563 -32.02834 -30.67185 -29.61365 -28.98662 -28.29093 -25.34381 -22.98994 -22.32855 -21.03937 -20.20880 -17.77540 -17.38655 -16.59837 -15.72460 -15.31283 -15.03182 -14.68905 -14.47558 -14.30912 -14.17788 -13.92139 -13.72856 -13.28827 -13.08995 -12.86709 -12.43464 -12.19805 -12.06069 -11.65621 -11.38899 -11.31744 -11.23652 -11.01382 -10.94531 -10.69231 -10.52197 -10.17592 -10.05141 -9.64717 -9.39501 -9.27384 -8.43739 -7.87727 -7.51679 -7.11675 -6.94453 -4.60160 1.33683 1.60572 1.65605 2.35291 2.47748 2.60404 2.70687 2.96287 2.99245 3.03857 3.76082 4.02063 4.33528 4.98519 4.99696 5.03761 5.30229 5.36479 5.49166 5.59075 5.75000 5.80971 5.88569 5.95244 6.18625 6.21823 6.50377 6.57387 6.71788 6.84431 6.95415 6.99799 7.19880 7.22344 7.48216 7.65324 7.75506 7.94179 8.29311 8.55104 8.61402 9.89458 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.005392 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.327970 B = 5191.263792 C = 7197.679007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.109 6.109 3 C -0.107 4.107 4 C -0.122 4.122 5 C -0.109 4.109 6 C 0.034 3.966 7 C -0.176 4.176 8 C -0.092 4.092 9 C -0.044 4.044 10 F -0.173 7.173 11 C -0.123 4.123 12 C -0.131 4.131 13 C 0.125 3.875 14 C -0.441 4.441 15 H 0.086 0.914 16 C 0.076 3.924 17 N -0.783 5.783 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.072 4.072 23 C -0.018 4.018 24 Cl -0.070 7.070 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.286 0.714 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -8.323 -0.664 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.132 5.868 3 C -0.220 4.220 4 C -0.146 4.146 5 C -0.129 4.129 6 C 0.031 3.969 7 C -0.178 4.178 8 C -0.111 4.111 9 C -0.064 4.064 10 F -0.152 7.152 11 C -0.142 4.142 12 C -0.150 4.150 13 C 0.122 3.878 14 C -0.469 4.469 15 H 0.104 0.896 16 C -0.144 4.144 17 N -0.407 5.407 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.092 4.092 23 C -0.050 4.050 24 Cl -0.041 7.041 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.369 -9.352 -0.675 10.804 hybrid contribution -0.404 0.899 0.477 1.095 sum -5.773 -8.453 -0.198 10.238 Atomic orbital electron populations 1.23680 0.96116 1.06565 1.05499 1.85514 1.04989 1.03232 1.93104 1.21454 0.94463 0.96684 1.09373 1.20870 0.97247 0.92853 1.03630 1.21288 0.96393 0.94720 1.00488 1.18689 0.91263 0.92870 0.94066 1.18229 1.08421 0.89783 1.01331 1.20506 1.00039 0.91472 0.99065 1.17161 1.04681 0.87973 0.96579 1.91297 1.84144 1.72255 1.67507 1.20536 0.97710 0.99191 0.96782 1.20980 1.01335 0.92923 0.99783 1.17571 0.88562 0.91955 0.89671 1.19597 1.00345 1.07678 1.19254 0.89560 1.25970 0.96756 0.94491 0.97162 1.69767 1.10045 1.25357 1.35490 0.86302 0.79642 0.80046 0.81076 1.18879 1.19821 1.18111 1.21320 1.01534 0.88868 0.97447 1.20285 0.87013 0.90268 1.07399 1.98338 1.51291 1.57491 1.96949 0.89918 0.89958 0.87813 0.85852 0.85594 0.87805 0.87995 0.85261 0.90244 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.14 101.05 0.92 -0.48 16 2 S -0.11 -1.48 21.46 -107.50 -2.31 -3.79 16 3 C -0.11 -1.73 6.13 -38.79 -0.24 -1.97 16 4 C -0.12 -1.85 9.34 -39.43 -0.37 -2.22 16 5 C -0.11 -1.84 9.51 -39.20 -0.37 -2.22 16 6 C 0.03 0.66 4.94 -104.85 -0.52 0.14 16 7 C -0.18 -3.86 5.52 -104.25 -0.58 -4.43 16 8 C -0.09 -1.96 9.48 -39.21 -0.37 -2.33 16 9 C -0.04 -0.98 7.30 -39.18 -0.29 -1.27 16 10 F -0.17 -3.73 17.26 2.25 0.04 -3.69 16 11 C -0.12 -2.73 9.94 -39.89 -0.40 -3.12 16 12 C -0.13 -3.07 8.60 -39.31 -0.34 -3.41 16 13 C 0.13 2.97 5.55 -106.54 -0.59 2.38 16 14 C -0.44 -10.31 7.05 -37.98 -0.27 -10.58 16 15 H 0.09 2.01 6.68 -52.48 -0.35 1.66 16 16 C 0.08 1.72 5.20 -17.32 -0.09 1.63 16 17 N -0.78 -18.15 10.92 55.55 0.61 -17.54 16 18 Si 0.91 17.39 29.58 -169.99 -5.03 12.36 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 22 C -0.07 -1.40 7.78 -39.18 -0.30 -1.71 16 23 C -0.02 -0.31 6.33 -39.35 -0.25 -0.56 16 24 Cl -0.07 -1.16 27.82 -51.86 -1.44 -2.61 16 25 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 26 H 0.08 0.72 7.74 -51.93 -0.40 0.31 16 27 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 28 H 0.12 1.49 5.86 -52.48 -0.31 1.19 16 29 H 0.13 1.94 8.05 -52.48 -0.42 1.52 16 30 H 0.10 2.00 8.05 -52.48 -0.42 1.58 16 31 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 32 H 0.13 3.08 6.24 -52.49 -0.33 2.76 16 33 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 34 H 0.15 3.07 7.28 -52.48 -0.38 2.68 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -24.50 322.31 -10.31 -34.82 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.00 Total: 5.74 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -4.04 Total: -30.15 kcal Atomic # 7 Polarization: -18.15 SS G_CDS: 0.61 Total: -17.54 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.31 Total: -3.79 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.44 Total: -2.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -24.50 -10.31 -34.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244736594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.359 kcal (2) G-P(sol) polarization free energy of solvation -24.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds