Wall clock time and date at job start Tue Mar 31 2020 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 102.99776 * 2 1 4 4 C 1.39240 * 119.93957 * 359.97438 * 3 2 1 5 5 C 1.37646 * 120.08096 * 179.97438 * 4 3 2 6 6 C 1.39825 * 119.95163 * 0.02562 * 5 4 3 7 7 C 1.47698 * 120.06214 * 180.02562 * 6 5 4 8 8 C 1.39193 * 120.32763 * 309.72655 * 7 6 5 9 9 C 1.38280 * 119.94962 * 179.74117 * 8 7 6 10 10 F 1.35100 * 119.68688 * 180.27377 * 9 8 7 11 11 C 1.39279 * 120.62658 * 0.53542 * 9 8 7 12 12 C 1.36309 * 120.67297 * 359.71817 * 11 9 8 13 13 C 1.40807 * 120.02723 * 0.02562 * 12 11 9 14 14 C 1.40759 * 120.30765 * 179.97438 * 13 12 11 15 15 H 1.08010 * 120.00126 * 152.08088 * 14 13 12 16 16 C 1.39978 * 120.00305 * 332.07883 * 14 13 12 17 17 N 1.30839 * 120.00274 * 346.59911 * 16 14 13 18 18 Si 1.86810 * 120.00120 * 166.59509 * 16 14 13 19 19 H 1.48502 * 109.46948 * 89.99924 * 18 16 14 20 20 H 1.48489 * 109.47265 * 210.00207 * 18 16 14 21 21 H 1.48508 * 109.47030 * 330.00453 * 18 16 14 22 22 C 1.39804 * 119.87932 * 359.76755 * 6 5 4 23 23 C 1.37744 * 119.91901 * 0.48617 * 22 6 5 24 24 Cl 1.73600 * 119.97910 * 179.76954 * 23 22 6 25 25 H 1.08998 * 109.47267 * 299.99501 * 1 2 3 26 26 H 1.08995 * 109.47504 * 59.99863 * 1 2 3 27 27 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.96080 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.02197 * 180.02562 * 5 4 3 30 30 H 1.08004 * 120.02765 * 359.97438 * 8 7 6 31 31 H 1.07990 * 119.66235 * 179.74238 * 11 9 8 32 32 H 1.07996 * 119.98611 * 180.02562 * 12 11 9 33 33 H 0.96996 * 120.00130 * 180.02562 * 17 16 14 34 34 H 1.08004 * 120.04333 * 180.24919 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1909 2.6654 -0.0005 5 6 1.4972 4.0073 0.0000 6 6 2.8337 4.4183 0.0005 7 6 3.1651 5.8577 0.0017 8 6 2.5746 6.7156 -0.9218 9 6 2.8865 8.0627 -0.9103 10 9 2.3061 8.8916 -1.8055 11 6 3.7974 8.5722 0.0119 12 6 4.3946 7.7542 0.9243 13 6 4.0934 6.3789 0.9410 14 6 4.7069 5.5287 1.8802 15 1 4.2000 4.6342 2.2111 16 6 5.9741 5.8424 2.3854 17 7 6.6992 6.7649 1.8065 18 14 6.6301 4.9440 3.8862 19 1 7.3755 3.7350 3.4527 20 1 7.5396 5.8418 4.6422 21 1 5.4963 4.5408 4.7565 22 6 3.8557 3.4644 0.0055 23 6 3.5434 2.1229 -0.0004 24 17 4.8113 0.9371 -0.0003 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.1586 2.3477 -0.0005 29 1 0.7057 4.7422 0.0000 30 1 1.8706 6.3301 -1.6444 31 1 4.0327 9.6262 0.0043 32 1 5.0989 8.1612 1.6346 33 1 7.5774 6.9821 2.1564 34 1 4.8889 3.7790 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244736594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:11 Heat of formation + Delta-G solvation = -30.188522 kcal Electronic energy + Delta-G solvation = -21514.250706 eV Core-core repulsion = 18056.182741 eV Total energy + Delta-G solvation = -3458.067965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.029 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.32846 -40.50906 -38.88287 -37.38120 -35.56239 -33.51998 -32.03729 -31.26579 -30.19106 -29.47751 -27.06374 -24.50371 -23.73492 -22.68723 -21.79344 -19.39385 -18.78389 -18.11869 -17.33993 -16.80480 -16.47181 -16.22911 -16.05814 -15.79281 -15.68935 -14.95348 -14.92750 -14.70660 -14.37543 -14.21977 -13.88800 -13.77207 -13.36923 -13.23126 -12.86648 -12.80066 -12.71938 -12.45623 -12.38044 -12.20072 -12.00824 -11.80496 -11.38396 -11.09995 -11.04999 -10.64210 -9.78275 -9.50720 -9.25182 -8.74066 -8.23914 -6.36802 -0.06438 0.30093 0.53729 0.76418 0.95009 1.17183 1.38204 1.43675 1.49923 1.56583 2.16166 2.55666 2.67933 3.54192 3.80580 3.82479 4.10176 4.24245 4.26470 4.33806 4.36261 4.41010 4.42546 4.66077 4.83857 4.92508 4.99813 5.02972 5.13049 5.21080 5.23959 5.51179 5.53562 5.71297 5.84989 5.89419 6.02360 6.21292 6.53852 6.80802 6.86755 8.22342 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.005392 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.327970 B = 5191.263792 C = 7197.679007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.127 6.127 3 C -0.103 4.103 4 C -0.113 4.113 5 C -0.102 4.102 6 C 0.004 3.996 7 C -0.171 4.171 8 C -0.094 4.094 9 C -0.055 4.055 10 F -0.169 7.169 11 C -0.127 4.127 12 C -0.151 4.151 13 C 0.100 3.900 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.044 3.956 17 N -0.811 5.811 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.263 1.263 21 H -0.259 1.259 22 C -0.082 4.082 23 C -0.032 4.032 24 Cl -0.066 7.066 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.293 0.707 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -10.179 -0.616 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.114 5.886 3 C -0.216 4.216 4 C -0.137 4.137 5 C -0.122 4.122 6 C 0.002 3.998 7 C -0.173 4.173 8 C -0.113 4.113 9 C -0.075 4.075 10 F -0.149 7.149 11 C -0.146 4.146 12 C -0.170 4.170 13 C 0.097 3.903 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.173 4.173 17 N -0.436 5.436 18 Si 0.784 3.216 19 H -0.189 1.189 20 H -0.187 1.187 21 H -0.182 1.182 22 C -0.102 4.102 23 C -0.064 4.064 24 Cl -0.037 7.037 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.146 0.854 28 H 0.180 0.820 29 H 0.161 0.839 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.557 -11.213 -0.637 13.537 hybrid contribution 0.139 1.323 0.375 1.382 sum -7.418 -9.890 -0.262 12.365 Atomic orbital electron populations 1.23853 0.91870 1.08628 1.06694 1.85652 1.09596 1.00845 1.92480 1.21787 0.93901 0.98792 1.07121 1.21261 0.98852 0.91736 1.01837 1.21473 0.95353 0.96125 0.99233 1.18664 0.92734 0.91594 0.96851 1.18511 1.07152 0.91306 1.00347 1.20738 1.00244 0.91117 0.99186 1.17306 1.04890 0.88522 0.96765 1.91298 1.84053 1.72197 1.67313 1.20690 0.97501 0.99946 0.96473 1.20929 1.02213 0.93304 1.00572 1.17890 0.89597 0.92254 0.90513 1.19637 1.01018 1.07725 1.20139 0.90186 1.26598 0.96618 0.95032 0.99059 1.69804 1.10602 1.26538 1.36643 0.85451 0.78994 0.78989 0.78134 1.18945 1.18736 1.18227 1.21078 1.00354 0.89960 0.98849 1.20360 0.88194 0.89773 1.08118 1.98328 1.51359 1.57050 1.96955 0.88788 0.88601 0.85362 0.81967 0.83882 0.85566 0.86428 0.86382 0.89636 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.14 113.37 1.04 -0.94 16 2 S -0.13 -3.08 21.46 -56.49 -1.21 -4.29 16 3 C -0.10 -3.10 6.13 22.78 0.14 -2.96 16 4 C -0.11 -3.06 9.34 22.37 0.21 -2.85 16 5 C -0.10 -3.24 9.51 22.51 0.21 -3.02 16 6 C 0.00 0.17 4.94 -20.01 -0.10 0.07 16 7 C -0.17 -7.62 5.52 -19.62 -0.11 -7.73 16 8 C -0.09 -3.97 9.48 22.51 0.21 -3.76 16 9 C -0.06 -2.44 7.30 22.53 0.16 -2.28 16 10 F -0.17 -7.17 17.26 44.97 0.78 -6.39 16 11 C -0.13 -5.73 9.94 22.07 0.22 -5.51 16 12 C -0.15 -7.33 8.60 22.45 0.19 -7.14 16 13 C 0.10 4.91 5.55 -21.11 -0.12 4.79 16 14 C -0.46 -22.17 7.05 23.31 0.16 -22.00 16 15 H 0.08 3.87 6.68 -2.91 -0.02 3.85 16 16 C 0.04 2.05 5.20 85.26 0.44 2.49 16 17 N -0.81 -38.89 10.92 21.83 0.24 -38.65 16 18 Si 0.96 36.22 29.58 68.60 2.03 38.25 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 C -0.08 -3.28 7.78 22.53 0.18 -3.10 16 23 C -0.03 -1.13 6.33 22.42 0.14 -0.99 16 24 Cl -0.07 -2.19 27.82 -2.72 -0.08 -2.26 16 25 H 0.09 1.17 7.74 -2.39 -0.02 1.16 16 26 H 0.10 1.15 7.74 -2.39 -0.02 1.13 16 27 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.16 3.08 5.86 -2.91 -0.02 3.06 16 29 H 0.14 3.99 8.05 -2.91 -0.02 3.97 16 30 H 0.13 4.66 8.05 -2.91 -0.02 4.64 16 31 H 0.12 4.77 8.06 -2.92 -0.02 4.75 16 32 H 0.12 5.91 6.24 -2.91 -0.02 5.89 16 33 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 34 H 0.12 5.33 7.28 -2.91 -0.02 5.31 16 Total: -1.00 -54.04 322.31 5.90 -48.14 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.15 Total: 20.14 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 2.99 Total: -54.94 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.24 Total: -38.65 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.78 Total: -6.39 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -1.21 Total: -4.29 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.26 kcal Total: -54.04 5.90 -48.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244736594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.952 kcal (2) G-P(sol) polarization free energy of solvation -54.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds