Wall clock time and date at job start Tue Mar 31 2020 12:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76198 * 103.00065 * 2 1 4 4 C 1.39241 * 119.94212 * 359.97438 * 3 2 1 5 5 C 1.37656 * 120.07669 * 180.02562 * 4 3 2 6 6 C 1.39787 * 119.95472 * 359.97438 * 5 4 3 7 7 C 1.47821 * 120.05352 * 180.02562 * 6 5 4 8 8 C 1.40115 * 119.86890 * 359.97438 * 7 6 5 9 9 C 1.36134 * 120.16976 * 180.02562 * 8 7 6 10 10 C 1.40975 * 119.91042 * 359.97438 * 9 8 7 11 11 C 1.40900 * 120.12580 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99841 * 204.83238 * 11 10 9 13 13 C 1.39932 * 120.00508 * 24.83218 * 11 10 9 14 14 N 1.30865 * 119.99747 * 17.89177 * 13 11 10 15 15 Si 1.86796 * 120.00236 * 197.89506 * 13 11 10 16 16 H 1.48500 * 109.47090 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47297 * 119.99719 * 15 13 11 18 18 H 1.48498 * 109.47391 * 239.99659 * 15 13 11 19 19 C 1.41197 * 119.74579 * 359.97438 * 10 9 8 20 20 F 1.35102 * 120.08961 * 180.02562 * 19 10 9 21 21 C 1.36498 * 119.82134 * 359.74159 * 19 10 9 22 22 C 1.39756 * 119.88720 * 0.02562 * 6 5 4 23 23 C 1.37749 * 119.92628 * 359.97438 * 22 6 5 24 24 Cl 1.73601 * 119.97842 * 179.97438 * 23 22 6 25 25 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47293 * 300.00184 * 1 2 3 27 27 H 1.09006 * 109.46954 * 60.00079 * 1 2 3 28 28 H 1.07998 * 119.96485 * 359.74861 * 4 3 2 29 29 H 1.08001 * 120.02568 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.91914 * 0.02562 * 8 7 6 31 31 H 1.08008 * 120.04499 * 179.97438 * 9 8 7 32 32 H 0.97000 * 120.00032 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.95632 * 180.24397 * 21 19 10 34 34 H 1.07999 * 120.03454 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1910 2.6654 -0.0005 5 6 1.4976 4.0074 -0.0011 6 6 2.8337 4.4182 -0.0005 7 6 3.1654 5.8587 -0.0005 8 6 2.1378 6.8113 -0.0016 9 6 2.4363 8.1395 -0.0022 10 6 3.7827 8.5575 -0.0011 11 6 4.0967 9.9311 -0.0011 12 1 5.0449 10.2682 -0.3931 13 6 3.1802 10.8585 0.5069 14 7 2.2084 10.4582 1.2865 15 14 3.3438 12.6677 0.0719 16 1 4.5172 12.8588 -0.8179 17 1 2.1140 13.1224 -0.6254 18 1 3.5305 13.4604 1.3136 19 6 4.8152 7.5944 0.0011 20 9 6.1078 7.9872 0.0027 21 6 4.5038 6.2654 0.0075 22 6 3.8554 3.4646 0.0000 23 6 3.5433 2.1230 0.0005 24 17 4.8113 0.9373 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.1588 2.3480 -0.0051 29 1 0.7063 4.7425 -0.0019 30 1 1.1064 6.4911 -0.0020 31 1 1.6426 8.8721 -0.0034 32 1 1.5728 11.1010 1.6384 33 1 5.2918 5.5270 0.0132 34 1 4.8885 3.7793 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244737851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:35 Heat of formation + Delta-G solvation = -30.643445 kcal Electronic energy + Delta-G solvation = -20899.933152 eV Core-core repulsion = 17441.845460 eV Total energy + Delta-G solvation = -3458.087692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.029 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.26232 -40.53642 -38.94982 -37.46023 -35.90335 -33.26159 -32.22857 -31.05799 -30.59829 -29.60700 -27.19687 -24.40839 -24.06595 -22.34559 -21.89389 -19.55326 -18.93788 -18.09134 -17.40700 -16.87872 -16.46133 -16.19920 -16.04757 -15.96756 -15.45088 -15.09420 -15.00949 -14.80091 -14.39877 -14.19431 -13.82911 -13.70198 -13.40212 -13.34071 -13.07015 -12.89915 -12.73156 -12.49237 -12.33526 -12.24652 -11.97584 -11.63953 -11.53374 -11.28992 -11.07375 -10.75467 -9.86010 -9.51608 -9.35032 -8.84240 -8.23531 -6.43406 -0.25932 0.21971 0.52900 0.85264 0.97156 1.09729 1.36906 1.46662 1.52459 1.54617 2.14658 2.40067 2.81833 3.52037 3.68463 3.78834 4.07654 4.13387 4.23666 4.30154 4.32582 4.35918 4.40983 4.61128 4.79681 4.90864 4.93356 4.99691 5.05027 5.09840 5.15851 5.44157 5.53280 5.60309 5.82117 5.95645 6.03224 6.09111 6.45322 6.62996 6.78270 8.11271 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.002931 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.887013 B = 9552.282186 C =10598.093800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.127 6.127 3 C -0.114 4.114 4 C -0.105 4.105 5 C -0.113 4.113 6 C 0.006 3.994 7 C -0.175 4.175 8 C -0.076 4.076 9 C -0.169 4.169 10 C 0.066 3.934 11 C -0.473 4.473 12 H 0.075 0.925 13 C 0.040 3.960 14 N -0.797 5.797 15 Si 0.987 3.013 16 H -0.262 1.262 17 H -0.254 1.254 18 H -0.262 1.262 19 C -0.063 4.063 20 F -0.171 7.171 21 C -0.096 4.096 22 C -0.123 4.123 23 C -0.019 4.019 24 Cl -0.061 7.061 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.299 0.701 33 H 0.123 0.877 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -13.582 -1.731 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.114 5.886 3 C -0.227 4.227 4 C -0.128 4.128 5 C -0.133 4.133 6 C 0.003 3.997 7 C -0.177 4.177 8 C -0.094 4.094 9 C -0.189 4.189 10 C 0.063 3.937 11 C -0.500 4.500 12 H 0.093 0.907 13 C -0.179 4.179 14 N -0.420 5.420 15 Si 0.806 3.194 16 H -0.186 1.186 17 H -0.178 1.178 18 H -0.186 1.186 19 C -0.083 4.083 20 F -0.150 7.150 21 C -0.115 4.115 22 C -0.143 4.143 23 C -0.052 4.052 24 Cl -0.032 7.032 25 H 0.146 0.854 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.683 -14.676 -1.570 16.203 hybrid contribution 0.142 2.046 0.023 2.051 sum -6.541 -12.630 -1.547 14.307 Atomic orbital electron populations 1.23854 0.91980 1.08620 1.06673 1.85655 1.09515 1.00914 1.92488 1.21780 0.94100 0.98720 1.08144 1.21292 0.98950 0.91794 1.00753 1.21419 0.95608 0.96189 1.00048 1.18788 0.93277 0.91253 0.96353 1.17999 0.91827 0.91295 1.16564 1.20854 0.98431 0.92244 0.97880 1.20847 0.95264 0.95424 1.07345 1.18098 0.92060 0.93314 0.90243 1.19836 1.03396 0.91870 1.34890 0.90688 1.26805 0.92972 1.06496 0.91627 1.69824 1.12148 1.39790 1.20272 0.85076 0.79981 0.74830 0.79465 1.18620 1.17790 1.18625 1.17706 0.77790 0.93537 1.19252 1.91250 1.35920 1.92233 1.95593 1.20590 0.97094 0.93135 1.00706 1.21055 1.00264 0.90204 1.02813 1.20323 0.88218 0.89848 1.06774 1.98342 1.50925 1.57038 1.96861 0.85438 0.88758 0.88687 0.82126 0.83515 0.84984 0.86181 0.88993 0.85944 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.14 113.37 1.04 -0.69 16 2 S -0.13 -2.74 21.46 -56.49 -1.21 -3.95 16 3 C -0.11 -3.04 6.13 22.78 0.14 -2.90 16 4 C -0.10 -2.51 9.35 22.37 0.21 -2.30 16 5 C -0.11 -3.20 9.42 22.51 0.21 -2.98 16 6 C 0.01 0.21 5.88 -20.00 -0.12 0.09 16 7 C -0.18 -7.18 5.90 -19.89 -0.12 -7.30 16 8 C -0.08 -3.14 9.35 22.24 0.21 -2.93 16 9 C -0.17 -8.15 8.62 22.45 0.19 -7.95 16 10 C 0.07 3.49 5.58 -21.23 -0.12 3.37 16 11 C -0.47 -24.80 8.75 23.33 0.20 -24.60 16 12 H 0.07 3.97 7.73 -2.91 -0.02 3.94 16 13 C 0.04 1.87 5.13 85.25 0.44 2.31 16 14 N -0.80 -37.90 10.97 21.83 0.24 -37.66 16 15 Si 0.99 35.55 29.60 68.60 2.03 37.58 16 16 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 19 C -0.06 -3.19 7.25 22.59 0.16 -3.03 16 20 F -0.17 -8.74 16.70 44.97 0.75 -7.99 16 21 C -0.10 -4.28 9.33 22.26 0.21 -4.07 16 22 C -0.12 -4.07 9.19 22.52 0.21 -3.86 16 23 C -0.02 -0.58 6.33 22.42 0.14 -0.43 16 24 Cl -0.06 -1.68 27.82 -2.72 -0.08 -1.76 16 25 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.00 7.75 -2.39 -0.02 0.98 16 27 H 0.09 0.99 7.74 -2.39 -0.02 0.97 16 28 H 0.16 2.68 5.86 -2.91 -0.02 2.66 16 29 H 0.15 3.63 6.17 -2.91 -0.02 3.61 16 30 H 0.13 4.49 6.16 -2.91 -0.02 4.47 16 31 H 0.12 5.85 6.17 -2.91 -0.02 5.83 16 32 H 0.30 12.50 8.30 -92.71 -0.77 11.73 16 33 H 0.12 4.88 6.16 -2.91 -0.02 4.86 16 34 H 0.13 4.30 6.17 -2.91 -0.02 4.28 16 Total: -1.00 -57.61 319.54 5.91 -51.70 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.17 Total: 19.37 kcal Atomic # 6 Polarization: -60.30 SS G_CDS: 3.01 Total: -57.29 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.24 Total: -37.66 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 0.75 Total: -7.99 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.21 Total: -3.95 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -57.61 5.91 -51.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244737851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.060 kcal (2) G-P(sol) polarization free energy of solvation -57.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds