Wall clock time and date at job start Tue Mar 31 2020 12:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99980 * 2 1 4 4 C 1.38940 * 120.14971 * 86.02506 * 3 2 1 5 5 Cl 1.73603 * 119.98754 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.01962 * 179.70192 * 4 3 2 7 7 C 1.38442 * 120.31832 * 0.27731 * 6 4 3 8 8 C 1.38009 * 120.29442 * 359.97438 * 7 6 4 9 9 C 1.39287 * 119.97952 * 0.02562 * 8 7 6 10 10 C 1.48298 * 120.16117 * 179.97438 * 9 8 7 11 11 C 1.39623 * 120.02459 * 293.65427 * 10 9 8 12 12 C 1.38451 * 120.42026 * 179.97438 * 11 10 9 13 13 C 1.37663 * 120.45561 * 0.02562 * 12 11 10 14 14 C 1.40762 * 120.02810 * 359.97438 * 13 12 11 15 15 C 1.41324 * 120.20705 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99534 * 207.36894 * 15 14 13 17 17 C 1.39920 * 119.99640 * 27.37068 * 15 14 13 18 18 N 1.30843 * 120.00863 * 14.83491 * 17 15 14 19 19 Si 1.86808 * 119.99401 * 194.83286 * 17 15 14 20 20 H 1.48492 * 109.47309 * 60.00330 * 19 17 15 21 21 H 1.48506 * 109.46640 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47306 * 299.99669 * 19 17 15 23 23 C 1.39112 * 120.01476 * 113.37704 * 10 9 8 24 24 F 1.35099 * 120.22779 * 359.97438 * 23 10 9 25 25 H 1.09007 * 109.47334 * 304.95063 * 1 2 3 26 26 H 1.08997 * 109.47298 * 64.95280 * 1 2 3 27 27 H 1.09005 * 109.47272 * 184.95556 * 1 2 3 28 28 H 1.08004 * 119.84349 * 180.25688 * 6 4 3 29 29 H 1.08002 * 119.85247 * 180.02562 * 7 6 4 30 30 H 1.08008 * 120.01081 * 180.02562 * 8 7 6 31 31 H 1.08006 * 119.78777 * 359.95298 * 11 10 9 32 32 H 1.08001 * 119.77658 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.98840 * 179.97438 * 13 12 11 34 34 H 0.96996 * 120.00500 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.2862 2.4155 1.1985 5 17 1.9894 1.5969 2.7004 6 6 2.6033 3.7605 1.1959 7 6 2.8412 4.4200 0.0021 8 6 2.7643 3.7400 -1.1963 9 6 2.4456 2.3841 -1.2080 10 6 2.3613 1.6495 -2.4935 11 6 1.3586 1.9633 -3.4130 12 6 1.2726 1.2831 -4.6158 13 6 2.1740 0.2883 -4.9209 14 6 3.1925 -0.0435 -4.0078 15 6 4.1202 -1.0638 -4.3173 16 1 4.5940 -1.6218 -3.5232 17 6 4.4248 -1.3507 -5.6524 18 7 4.0904 -0.5078 -6.5957 19 14 5.3091 -2.9375 -6.0883 20 1 4.4910 -4.0966 -5.6499 21 1 5.5133 -3.0027 -7.5578 22 1 6.6264 -2.9742 -5.4040 23 6 3.2849 0.6513 -2.7864 24 9 4.2610 0.3475 -1.9032 25 1 -0.3634 0.5887 0.8424 26 1 -0.3634 0.4351 -0.9310 27 1 -0.3634 -1.0239 0.0888 28 1 2.6655 4.2999 2.1295 29 1 3.0888 5.4712 0.0088 30 1 2.9511 4.2590 -2.1249 31 1 0.6452 2.7414 -3.1843 32 1 0.4930 1.5346 -5.3197 33 1 2.0997 -0.2377 -5.8612 34 1 4.3019 -0.7066 -7.5212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245775201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:46 Heat of formation + Delta-G solvation = -11.877429 kcal Electronic energy + Delta-G solvation = -21954.021420 eV Core-core repulsion = 18496.747484 eV Total energy + Delta-G solvation = -3457.273936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.029 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.21640 -39.15722 -37.23599 -36.29986 -33.93823 -31.82574 -30.72777 -29.66067 -28.54123 -28.03327 -25.37228 -23.08142 -22.66898 -20.79844 -20.43811 -17.85223 -17.01407 -16.06616 -15.77352 -15.62831 -15.28345 -14.78081 -14.47593 -14.12165 -13.94074 -13.65110 -13.53659 -13.11343 -13.04027 -12.88289 -12.54063 -11.92838 -11.82516 -11.61782 -11.53924 -11.45152 -11.13653 -11.07930 -10.84696 -10.77194 -10.47766 -10.06246 -9.89375 -9.63252 -9.27615 -8.65779 -8.58655 -7.54890 -7.43793 -7.03159 -6.82182 -4.44810 0.98090 1.26069 1.96489 2.27142 2.61535 2.68043 2.99245 3.04645 3.08535 3.14127 3.74654 3.89941 4.48718 4.84465 5.01614 5.28718 5.30865 5.39571 5.41294 5.46361 5.65645 5.79334 5.87200 5.98309 6.09131 6.19083 6.34663 6.46805 6.53459 6.72911 6.88363 7.01900 7.12653 7.39290 7.52358 7.82146 7.92825 8.01808 8.48063 8.70591 8.77820 10.11071 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.004339 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.387367 B = 6451.121375 C = 6861.791843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.111 6.111 3 C -0.107 4.107 4 C 0.005 3.995 5 Cl -0.060 7.060 6 C -0.134 4.134 7 C -0.087 4.087 8 C -0.116 4.116 9 C 0.045 3.955 10 C -0.077 4.077 11 C -0.197 4.197 12 C -0.114 4.114 13 C -0.134 4.134 14 C 0.085 3.915 15 C -0.453 4.453 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.026 3.974 24 F -0.153 7.153 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 5.809 9.466 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.121 5.879 3 C -0.219 4.219 4 C -0.025 4.025 5 Cl -0.031 7.031 6 C -0.154 4.154 7 C -0.105 4.105 8 C -0.136 4.136 9 C 0.042 3.958 10 C -0.078 4.078 11 C -0.217 4.217 12 C -0.133 4.133 13 C -0.154 4.154 14 C 0.082 3.918 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.141 4.141 18 N -0.421 5.421 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.189 1.189 23 C 0.006 3.994 24 F -0.132 7.132 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.583 4.797 9.377 11.487 hybrid contribution -0.211 0.476 -0.016 0.521 sum -4.794 5.273 9.361 11.765 Atomic orbital electron populations 1.23550 0.96164 1.05997 1.04906 1.85677 1.04910 1.00192 1.97132 1.21804 1.08452 0.98663 0.93025 1.21162 1.01785 0.92892 0.86663 1.98352 1.94170 1.79469 1.31120 1.20963 1.02968 0.92301 0.99209 1.21149 0.97777 0.99977 0.91614 1.21455 0.99840 0.93630 0.98637 1.19265 0.91897 0.92581 0.92039 1.18076 0.98653 0.98489 0.92603 1.20108 1.01074 1.04983 0.95493 1.20592 0.99208 0.97758 0.95737 1.21234 0.93981 0.99298 1.00878 1.17520 0.92853 0.91996 0.89397 1.19463 1.20954 1.15182 0.92598 0.89925 1.25867 0.94784 0.97468 0.96009 1.69777 1.37081 1.33244 1.02008 0.86288 0.80433 0.81896 0.77742 1.18658 1.20266 1.18864 1.17724 0.90718 0.99461 0.91512 1.91298 1.61189 1.92729 1.67948 0.91075 0.90195 0.88129 0.84962 0.84912 0.84744 0.88700 0.88567 0.85687 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.72 101.05 1.08 -0.94 16 2 S -0.11 -2.06 18.97 -107.50 -2.04 -4.10 16 3 C -0.11 -1.95 5.60 -38.66 -0.22 -2.17 16 4 C 0.00 0.08 6.33 -39.34 -0.25 -0.17 16 5 Cl -0.06 -0.84 27.83 -51.86 -1.44 -2.29 16 6 C -0.13 -1.78 9.81 -39.52 -0.39 -2.16 16 7 C -0.09 -1.12 10.03 -39.59 -0.40 -1.52 16 8 C -0.12 -1.84 9.74 -39.28 -0.38 -2.22 16 9 C 0.04 0.85 4.99 -104.71 -0.52 0.33 16 10 C -0.08 -1.67 4.57 -104.92 -0.48 -2.15 16 11 C -0.20 -4.07 9.74 -38.99 -0.38 -4.45 16 12 C -0.11 -2.46 10.01 -39.71 -0.40 -2.86 16 13 C -0.13 -3.28 8.66 -38.84 -0.34 -3.62 16 14 C 0.09 2.23 5.55 -106.79 -0.59 1.63 16 15 C -0.45 -11.96 8.76 -37.78 -0.33 -12.29 16 16 H 0.08 2.19 7.77 -52.49 -0.41 1.78 16 17 C 0.08 1.88 5.18 -17.34 -0.09 1.79 16 18 N -0.80 -19.83 10.97 55.55 0.61 -19.22 16 19 Si 0.91 18.54 29.58 -169.99 -5.03 13.51 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C 0.03 0.65 6.42 -38.28 -0.25 0.40 16 24 F -0.15 -3.89 15.61 2.25 0.04 -3.86 16 25 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.10 1.28 8.14 -51.92 -0.42 0.85 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 31 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.13 3.13 6.25 -52.49 -0.33 2.80 16 34 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -27.36 327.42 -10.11 -37.47 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.25 Total: 3.95 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -3.92 Total: -30.39 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.04 Total: -4.10 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.44 Total: -2.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.36 -10.11 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245775201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.588 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds