Wall clock time and date at job start Tue Mar 31 2020 12:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99980 * 2 1 4 4 C 1.38940 * 120.14971 * 86.02506 * 3 2 1 5 5 Cl 1.73603 * 119.98754 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.01962 * 179.70192 * 4 3 2 7 7 C 1.38442 * 120.31832 * 0.27731 * 6 4 3 8 8 C 1.38009 * 120.29442 * 359.97438 * 7 6 4 9 9 C 1.39287 * 119.97952 * 0.02562 * 8 7 6 10 10 C 1.48298 * 120.16117 * 179.97438 * 9 8 7 11 11 C 1.39623 * 120.02459 * 293.65427 * 10 9 8 12 12 C 1.38451 * 120.42026 * 179.97438 * 11 10 9 13 13 C 1.37663 * 120.45561 * 0.02562 * 12 11 10 14 14 C 1.40762 * 120.02810 * 359.97438 * 13 12 11 15 15 C 1.41324 * 120.20705 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99534 * 207.36894 * 15 14 13 17 17 C 1.39920 * 119.99640 * 27.37068 * 15 14 13 18 18 N 1.30843 * 120.00863 * 14.83491 * 17 15 14 19 19 Si 1.86808 * 119.99401 * 194.83286 * 17 15 14 20 20 H 1.48492 * 109.47309 * 60.00330 * 19 17 15 21 21 H 1.48506 * 109.46640 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47306 * 299.99669 * 19 17 15 23 23 C 1.39112 * 120.01476 * 113.37704 * 10 9 8 24 24 F 1.35099 * 120.22779 * 359.97438 * 23 10 9 25 25 H 1.09007 * 109.47334 * 304.95063 * 1 2 3 26 26 H 1.08997 * 109.47298 * 64.95280 * 1 2 3 27 27 H 1.09005 * 109.47272 * 184.95556 * 1 2 3 28 28 H 1.08004 * 119.84349 * 180.25688 * 6 4 3 29 29 H 1.08002 * 119.85247 * 180.02562 * 7 6 4 30 30 H 1.08008 * 120.01081 * 180.02562 * 8 7 6 31 31 H 1.08006 * 119.78777 * 359.95298 * 11 10 9 32 32 H 1.08001 * 119.77658 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.98840 * 179.97438 * 13 12 11 34 34 H 0.96996 * 120.00500 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.2862 2.4155 1.1985 5 17 1.9894 1.5969 2.7004 6 6 2.6033 3.7605 1.1959 7 6 2.8412 4.4200 0.0021 8 6 2.7643 3.7400 -1.1963 9 6 2.4456 2.3841 -1.2080 10 6 2.3613 1.6495 -2.4935 11 6 1.3586 1.9633 -3.4130 12 6 1.2726 1.2831 -4.6158 13 6 2.1740 0.2883 -4.9209 14 6 3.1925 -0.0435 -4.0078 15 6 4.1202 -1.0638 -4.3173 16 1 4.5940 -1.6218 -3.5232 17 6 4.4248 -1.3507 -5.6524 18 7 4.0904 -0.5078 -6.5957 19 14 5.3091 -2.9375 -6.0883 20 1 4.4910 -4.0966 -5.6499 21 1 5.5133 -3.0027 -7.5578 22 1 6.6264 -2.9742 -5.4040 23 6 3.2849 0.6513 -2.7864 24 9 4.2610 0.3475 -1.9032 25 1 -0.3634 0.5887 0.8424 26 1 -0.3634 0.4351 -0.9310 27 1 -0.3634 -1.0239 0.0888 28 1 2.6655 4.2999 2.1295 29 1 3.0888 5.4712 0.0088 30 1 2.9511 4.2590 -2.1249 31 1 0.6452 2.7414 -3.1843 32 1 0.4930 1.5346 -5.3197 33 1 2.0997 -0.2377 -5.8612 34 1 4.3019 -0.7066 -7.5212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245775201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:46 Heat of formation + Delta-G solvation = -22.941679 kcal Electronic energy + Delta-G solvation = -21954.501202 eV Core-core repulsion = 18496.747484 eV Total energy + Delta-G solvation = -3457.753718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.029 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.12981 -40.42589 -38.90248 -37.46644 -35.70827 -33.28480 -31.92718 -31.45465 -29.76657 -29.53840 -27.23336 -24.49558 -23.87564 -22.55857 -22.03479 -19.41699 -18.47640 -17.88286 -17.19128 -17.13897 -16.82452 -16.29950 -15.93953 -15.74343 -15.61895 -14.86475 -14.77528 -14.65829 -14.50919 -14.29609 -13.78802 -13.65305 -13.45629 -13.19511 -12.95771 -12.84498 -12.62657 -12.50574 -12.34876 -12.13749 -12.04414 -11.68811 -11.47935 -11.23081 -11.09082 -9.95351 -9.76926 -9.34565 -9.14045 -8.66765 -8.49401 -6.39199 -0.21305 0.03920 0.69887 0.85746 0.87036 1.15526 1.37001 1.47088 1.50223 1.75531 2.20273 2.52844 2.68079 3.52405 3.59415 3.98639 4.01672 4.12378 4.26234 4.28742 4.31026 4.41587 4.49109 4.62909 4.77813 4.81327 4.98710 5.00886 5.15288 5.22399 5.28621 5.34407 5.59558 5.70622 5.74643 6.02050 6.04695 6.19462 6.58494 6.81585 6.90686 8.30343 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.004339 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.387367 B = 6451.121375 C = 6861.791843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.180 6.180 3 C -0.116 4.116 4 C -0.008 4.008 5 Cl -0.050 7.050 6 C -0.120 4.120 7 C -0.070 4.070 8 C -0.121 4.121 9 C 0.006 3.994 10 C -0.063 4.063 11 C -0.187 4.187 12 C -0.110 4.110 13 C -0.154 4.154 14 C 0.057 3.943 15 C -0.496 4.496 16 H 0.064 0.936 17 C 0.042 3.958 18 N -0.822 5.822 19 Si 0.978 3.022 20 H -0.260 1.260 21 H -0.260 1.260 22 H -0.266 1.266 23 C -0.003 4.003 24 F -0.166 7.166 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.169 0.831 29 H 0.179 0.821 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 8.029 10.546 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S 0.052 5.948 3 C -0.228 4.228 4 C -0.038 4.038 5 Cl -0.021 7.021 6 C -0.140 4.140 7 C -0.088 4.088 8 C -0.141 4.141 9 C 0.003 3.997 10 C -0.065 4.065 11 C -0.206 4.206 12 C -0.128 4.128 13 C -0.174 4.174 14 C 0.054 3.946 15 C -0.525 4.525 16 H 0.082 0.918 17 C -0.173 4.173 18 N -0.447 5.447 19 Si 0.799 3.201 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.191 1.191 23 C -0.023 4.023 24 F -0.145 7.145 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.135 0.865 28 H 0.186 0.814 29 H 0.196 0.804 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.542 7.032 10.462 13.770 hybrid contribution -0.018 -0.046 -0.193 0.199 sum -5.560 6.986 10.269 13.607 Atomic orbital electron populations 1.23534 0.92597 1.07378 1.05192 1.85859 1.08945 1.02689 1.97310 1.21750 1.09595 0.97545 0.93899 1.21334 1.02188 0.93905 0.86332 1.98353 1.94105 1.79595 1.30051 1.21458 1.00322 0.91218 1.00979 1.21610 0.95338 1.01809 0.90016 1.21646 0.99552 0.92365 1.00506 1.19223 0.95516 0.94029 0.90923 1.18338 0.97151 0.96965 0.94013 1.20522 1.00707 1.04751 0.94617 1.20925 0.98884 0.96401 0.96639 1.21197 0.94958 1.00818 1.00431 1.17850 0.93512 0.92608 0.90621 1.19552 1.22803 1.16838 0.93342 0.91822 1.26578 0.95218 1.00297 0.95218 1.69802 1.37900 1.34544 1.02502 0.85310 0.78868 0.77714 0.78211 1.18471 1.18366 1.19103 1.18007 0.91804 1.01071 0.91393 1.91244 1.61928 1.93057 1.68303 0.89405 0.90851 0.86483 0.81374 0.80367 0.83935 0.85455 0.85481 0.87007 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.39 10.72 113.37 1.22 -2.18 16 2 S -0.18 -6.77 18.97 -56.49 -1.07 -7.84 16 3 C -0.12 -4.12 5.60 22.86 0.13 -4.00 16 4 C -0.01 -0.22 6.33 22.43 0.14 -0.08 16 5 Cl -0.05 -1.32 27.83 -2.72 -0.08 -1.39 16 6 C -0.12 -2.67 9.81 22.31 0.22 -2.45 16 7 C -0.07 -1.48 10.03 22.26 0.22 -1.26 16 8 C -0.12 -3.52 9.74 22.47 0.22 -3.30 16 9 C 0.01 0.22 4.99 -19.92 -0.10 0.12 16 10 C -0.06 -2.76 4.57 -20.06 -0.09 -2.85 16 11 C -0.19 -7.50 9.74 22.65 0.22 -7.27 16 12 C -0.11 -4.69 10.01 22.18 0.22 -4.47 16 13 C -0.15 -7.80 8.66 22.75 0.20 -7.60 16 14 C 0.06 3.12 5.55 -21.27 -0.12 3.00 16 15 C -0.50 -27.83 8.76 23.44 0.21 -27.63 16 16 H 0.06 3.65 7.77 -2.91 -0.02 3.63 16 17 C 0.04 2.14 5.18 85.25 0.44 2.59 16 18 N -0.82 -42.24 10.97 21.82 0.24 -42.00 16 19 Si 0.98 39.15 29.58 68.60 2.03 41.18 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 23 C 0.00 -0.13 6.42 23.11 0.15 0.02 16 24 F -0.17 -8.97 15.61 44.97 0.70 -8.27 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.11 5.84 6.25 -2.91 -0.02 5.83 16 34 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 Total: -1.00 -63.68 327.42 6.23 -57.45 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.14 Total: 18.25 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 3.27 Total: -57.37 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 0.70 Total: -8.27 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.07 Total: -7.84 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -63.68 6.23 -57.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245775201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.507 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds