Wall clock time and date at job start Tue Mar 31 2020 13:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 C 1.53002 * 109.47317 * 180.02562 * 5 4 2 7 7 C 1.50695 * 109.47379 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00287 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00478 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99823 * 359.97438 * 9 7 6 12 12 H 1.48489 * 109.47351 * 89.99753 * 11 9 7 13 13 H 1.48504 * 109.47065 * 210.00251 * 11 9 7 14 14 H 1.48505 * 109.47046 * 329.99486 * 11 9 7 15 15 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 16 16 C 1.38615 * 120.42332 * 99.99912 * 15 2 1 17 17 C 1.38663 * 118.43615 * 180.02562 * 16 15 2 18 18 C 1.38189 * 119.19180 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.60964 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.47070 * 90.00055 * 19 18 17 21 21 F 1.39899 * 109.47143 * 210.00465 * 19 18 17 22 22 F 1.39902 * 109.46840 * 330.00191 * 19 18 17 23 23 N 1.31875 * 120.78293 * 0.02562 * 18 17 16 24 24 C 1.31982 * 121.70474 * 359.69808 * 23 18 17 25 25 Cl 1.73601 * 119.63495 * 180.28890 * 24 23 18 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.00896 * 111.00728 * 321.04492 * 4 2 1 30 30 H 1.09007 * 109.47248 * 299.99411 * 5 4 2 31 31 H 1.08990 * 109.47767 * 59.99672 * 5 4 2 32 32 H 1.09010 * 109.46876 * 299.99637 * 6 5 4 33 33 H 1.09000 * 109.47585 * 59.99024 * 6 5 4 34 34 H 0.96996 * 119.99919 * 180.02562 * 10 9 7 35 35 H 1.08005 * 120.77992 * 359.97438 * 16 15 2 36 36 H 1.08002 * 120.40503 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5949 -0.5331 -3.5745 7 6 2.6588 0.4055 -4.7517 8 1 2.3630 1.4378 -4.6360 9 6 3.0948 -0.0534 -5.9766 10 7 3.1510 0.7658 -7.0038 11 14 3.6071 -1.8387 -6.1766 12 1 2.4281 -2.6509 -6.5705 13 1 4.6512 -1.9393 -7.2278 14 1 4.1496 -2.3451 -4.8902 15 6 2.0323 -0.7104 1.2305 16 6 2.4620 -2.0261 1.1551 17 6 2.9156 -2.6400 2.3128 18 6 2.9250 -1.9251 3.4954 19 6 3.4165 -2.5828 4.7591 20 9 4.7933 -2.3715 4.8896 21 9 2.7535 -2.0309 5.8604 22 9 3.1591 -3.9567 4.7003 23 7 2.5089 -0.6742 3.5313 24 6 2.0756 -0.0561 2.4487 25 17 1.5473 1.5941 2.5559 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.4495 -1.4979 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7587 1.0462 -2.1183 32 1 3.5903 -0.9272 -3.3692 33 1 1.9182 -1.3565 -3.8030 34 1 3.4574 0.4427 -7.8656 35 1 2.4431 -2.5608 0.2169 36 1 3.2573 -3.6642 2.2905 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856776607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:06 Heat of formation + Delta-G solvation = -144.422797 kcal Electronic energy + Delta-G solvation = -24310.592213 eV Core-core repulsion = 20018.714124 eV Total energy + Delta-G solvation = -4291.878090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.27871 -48.79986 -48.74638 -41.81643 -38.53372 -37.85379 -35.54152 -34.07109 -33.36439 -32.00749 -29.87754 -27.70763 -26.15948 -24.78297 -24.37310 -22.29417 -22.04590 -19.94054 -19.66443 -19.63904 -18.92832 -18.02125 -17.36235 -16.67755 -16.29561 -16.17952 -15.96071 -15.58806 -15.54627 -15.29140 -15.17569 -14.98940 -14.89454 -14.87252 -14.65814 -14.54068 -14.08751 -13.92650 -13.44917 -13.24717 -13.12298 -12.88383 -12.80155 -12.51375 -12.11794 -11.93527 -11.75062 -11.72692 -11.38582 -11.05922 -11.00222 -10.73493 -10.26525 -9.41434 -8.26412 -6.31136 -0.61339 -0.17923 0.51408 1.34010 1.40346 1.43594 1.55387 2.09097 2.37322 2.40161 2.78804 2.98776 3.10028 3.24093 3.45827 3.52320 3.76545 3.83558 3.96282 4.10688 4.29029 4.48818 4.51347 4.60720 4.74581 4.84051 4.92885 5.00019 5.11904 5.19823 5.35159 5.53915 5.68264 6.03117 6.13416 6.27827 6.50390 6.78648 7.34013 8.90354 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002965 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.819549 B = 9440.679846 C =10550.683897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 H 0.091 0.909 4 N -0.681 5.681 5 C 0.089 3.911 6 C -0.004 4.004 7 C -0.533 4.533 8 H 0.030 0.970 9 C 0.002 3.998 10 N -0.954 5.954 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.291 1.291 14 H -0.241 1.241 15 C -0.068 4.068 16 C -0.036 4.036 17 C -0.105 4.105 18 C 0.029 3.971 19 C 0.531 3.469 20 F -0.173 7.173 21 F -0.173 7.173 22 F -0.161 7.161 23 N -0.462 5.462 24 C 0.164 3.836 25 Cl -0.016 7.016 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.352 0.648 30 H 0.026 0.974 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.184 0.816 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -9.912 23.988 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 H 0.109 0.891 4 N -0.313 5.313 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.195 4.195 10 N -0.595 5.595 11 Si 0.778 3.222 12 H -0.190 1.190 13 H -0.217 1.217 14 H -0.164 1.164 15 C -0.071 4.071 16 C -0.061 4.061 17 C -0.125 4.125 18 C -0.110 4.110 19 C 0.476 3.524 20 F -0.154 7.154 21 F -0.154 7.154 22 F -0.142 7.142 23 N -0.173 5.173 24 C -0.002 4.002 25 Cl 0.013 6.987 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.171 0.829 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.201 0.799 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.780 -9.230 24.832 26.638 hybrid contribution -0.597 -0.160 -1.197 1.347 sum -3.376 -9.390 23.636 25.656 Atomic orbital electron populations 1.22416 0.93817 1.03661 1.03308 1.20429 0.94392 0.97407 0.86905 0.89078 1.60525 1.57078 1.10263 1.03398 1.21634 0.98599 0.94679 0.89058 1.19435 0.97045 0.95571 0.92159 1.21445 1.43610 0.97112 0.94961 0.95146 1.26046 0.95090 1.02959 0.95372 1.70078 1.49352 1.38065 1.02036 0.85593 0.78507 0.79195 0.78920 1.19033 1.21682 1.16408 1.20859 0.96977 0.95508 0.93799 1.21842 0.91946 0.92550 0.99792 1.22300 0.96645 1.02990 0.90568 1.20895 1.04244 0.91610 0.94296 1.17698 0.75366 0.76442 0.82910 1.93245 1.31290 1.94663 1.96210 1.93222 1.80568 1.85444 1.56148 1.93234 1.93809 1.30766 1.96384 1.66322 1.09715 1.09574 1.31663 1.21391 1.00078 0.89323 0.89400 1.98421 1.87626 1.14405 1.98249 0.91639 0.90649 0.91173 0.82883 0.95549 0.92769 0.95651 0.95724 0.92591 0.79906 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.10 71.98 0.66 -2.52 16 2 C 0.12 2.57 2.26 44.17 0.10 2.67 16 3 H 0.09 2.20 7.01 -2.39 -0.02 2.18 16 4 N -0.68 -16.93 5.12 -495.46 -2.54 -19.47 16 5 C 0.09 3.05 5.42 86.30 0.47 3.52 16 6 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 7 C -0.53 -29.42 9.66 25.60 0.25 -29.17 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C 0.00 0.10 5.47 84.65 0.46 0.57 16 10 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 11 Si 0.95 42.38 27.47 68.60 1.88 44.26 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 15 C -0.07 -1.37 5.10 -19.75 -0.10 -1.47 16 16 C -0.04 -0.58 9.44 22.46 0.21 -0.37 16 17 C -0.11 -1.58 9.43 22.36 0.21 -1.37 16 18 C 0.03 0.57 6.29 42.54 0.27 0.84 16 19 C 0.53 10.07 3.43 71.24 0.24 10.32 16 20 F -0.17 -3.49 17.30 44.97 0.78 -2.71 16 21 F -0.17 -3.76 17.04 44.97 0.77 -2.99 16 22 F -0.16 -2.55 16.44 44.97 0.74 -1.81 16 23 N -0.46 -11.08 9.94 -174.85 -1.74 -12.81 16 24 C 0.16 3.72 7.27 84.70 0.62 4.34 16 25 Cl -0.02 -0.34 26.83 -2.72 -0.07 -0.41 16 26 H 0.06 1.31 7.45 -2.39 -0.02 1.29 16 27 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.07 1.22 7.30 -2.39 -0.02 1.20 16 29 H 0.35 7.35 8.06 -89.70 -0.72 6.63 16 30 H 0.03 0.91 7.44 -2.38 -0.02 0.89 16 31 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 32 H 0.03 1.08 7.20 -2.38 -0.02 1.07 16 33 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 35 H 0.18 2.35 6.97 -2.91 -0.02 2.33 16 36 H 0.19 1.57 7.60 -2.91 -0.02 1.55 16 Total: -1.00 -65.48 331.13 3.99 -61.49 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.36 Total: 5.78 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 3.51 Total: -12.70 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -3.98 Total: -90.90 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 2.28 Total: -7.51 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.07 Total: -0.41 kcal Total: -65.48 3.99 -61.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856776607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.932 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds