Wall clock time and date at job start Tue Mar 31 2020 12:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37963 * 120.07828 * 2 1 4 4 C 1.38345 * 120.15319 * 180.25651 * 3 2 1 5 5 C 1.38391 * 120.30274 * 359.49382 * 4 3 2 6 6 N 1.48011 * 119.92692 * 180.27890 * 5 4 3 7 7 O 1.21799 * 120.00088 * 359.97438 * 6 5 4 8 8 O 1.21795 * 120.00213 * 179.97438 * 6 5 4 9 9 C 1.37925 * 120.14945 * 0.24648 * 5 4 3 10 10 C 1.39606 * 120.07902 * 179.74987 * 2 1 3 11 11 C 1.47731 * 120.14921 * 359.97260 * 10 2 1 12 12 O 1.21470 * 120.00047 * 353.79837 * 11 10 2 13 13 O 1.34714 * 120.00255 * 173.79607 * 11 10 2 14 14 C 1.45196 * 116.99972 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47133 * 179.97438 * 14 13 11 16 16 O 1.21279 * 119.99610 * 0.02562 * 15 14 13 17 17 N 1.34769 * 119.99971 * 179.97438 * 15 14 13 18 18 C 1.46504 * 120.00059 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47075 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00360 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99583 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99812 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46981 * 120.00226 * 23 21 19 26 26 H 1.48493 * 109.47530 * 240.00292 * 23 21 19 27 27 H 1.09005 * 109.46646 * 263.67288 * 1 2 3 28 28 H 1.09000 * 109.47272 * 23.67258 * 1 2 3 29 29 H 1.08999 * 109.47028 * 143.67688 * 1 2 3 30 30 H 1.08002 * 119.92460 * 0.02562 * 3 2 1 31 31 H 1.08005 * 119.85201 * 179.76227 * 4 3 2 32 32 H 1.07999 * 120.07592 * 179.97438 * 9 5 4 33 33 H 1.09006 * 109.46878 * 299.99922 * 14 13 11 34 34 H 1.09000 * 109.47377 * 59.99679 * 14 13 11 35 35 H 0.97003 * 120.00430 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46552 * 299.99560 * 18 17 15 37 37 H 1.08995 * 109.46975 * 59.99796 * 18 17 15 38 38 H 0.97007 * 119.99716 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1957 -0.0054 5 6 4.2817 0.0018 -0.0002 6 7 5.7618 0.0135 0.0003 7 8 6.3624 1.0730 -0.0044 8 8 6.3791 -1.0364 0.0053 9 6 3.6031 -1.1990 0.0052 10 6 2.2066 -1.2080 0.0053 11 6 1.4731 -2.4904 0.0115 12 8 0.2638 -2.4977 0.1257 13 8 2.1453 -3.6515 -0.1095 14 6 1.3596 -4.8725 -0.0959 15 6 2.2751 -6.0606 -0.2419 16 8 3.4720 -5.8946 -0.3465 17 7 1.7640 -7.3076 -0.2551 18 6 2.6541 -8.4626 -0.3964 19 6 1.8387 -9.7299 -0.3811 20 1 0.7649 -9.6800 -0.2770 21 6 2.4636 -10.9531 -0.5011 22 7 3.7711 -11.0139 -0.6284 23 14 1.4530 -12.5240 -0.4815 24 1 0.0152 -12.1858 -0.3277 25 1 1.6548 -13.2583 -1.7565 26 1 1.8856 -13.3768 0.6546 27 1 -0.3633 -0.1133 1.0215 28 1 -0.3634 0.9412 -0.4126 29 1 -0.3633 -0.8280 -0.6087 30 1 1.6584 2.1292 0.0004 31 1 4.1182 2.1331 -0.0092 32 1 4.1505 -2.1300 0.0088 33 1 0.8171 -4.9449 0.8468 34 1 0.6500 -4.8572 -0.9232 35 1 0.8069 -7.4404 -0.1702 36 1 3.1962 -8.3903 -1.3392 37 1 3.3638 -8.4777 0.4307 38 1 4.2108 -11.8745 -0.7124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064163104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:18 Heat of formation + Delta-G solvation = -96.316928 kcal Electronic energy + Delta-G solvation = -25666.951941 eV Core-core repulsion = 21478.307454 eV Total energy + Delta-G solvation = -4188.644487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45539 -41.22118 -39.69312 -38.70757 -36.78865 -36.73288 -34.32043 -33.79802 -32.53795 -32.40204 -29.51201 -28.93282 -26.84107 -25.64608 -24.80912 -22.95033 -22.34976 -21.46874 -20.06284 -19.60811 -18.94972 -17.89566 -17.76723 -17.58417 -16.93552 -16.47890 -16.25249 -16.04062 -15.53521 -15.14421 -15.03136 -14.78154 -14.31822 -14.21573 -13.30564 -13.13900 -12.95453 -12.84493 -12.80940 -12.60649 -12.51360 -12.04960 -11.85097 -11.77595 -11.45762 -11.33605 -11.02444 -11.00574 -10.89757 -10.65637 -10.38225 -10.05821 -9.91861 -9.46342 -9.27632 -8.82799 -8.05159 -6.22801 -4.30560 -0.60450 -0.06327 0.88893 1.05379 1.90307 2.03878 2.78983 3.08180 3.20095 3.27256 3.30017 3.62240 3.81437 3.96443 3.97842 4.13274 4.28905 4.37575 4.52068 4.87987 4.95020 5.02064 5.03496 5.07633 5.13865 5.16044 5.18890 5.22997 5.43308 5.60041 5.70956 6.06581 6.10178 7.16287 7.21455 7.30906 7.37554 7.41451 7.56634 7.88091 8.42878 8.65838 8.89497 9.35992 10.87297 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.002383 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.638776 B =11744.795798 C =13232.305460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 C -0.133 4.133 4 C -0.020 4.020 5 C -0.065 4.065 6 N 0.028 4.972 7 O -0.161 6.161 8 O -0.144 6.144 9 C 0.010 3.990 10 C -0.126 4.126 11 C 0.511 3.489 12 O -0.493 6.493 13 O -0.322 6.322 14 C 0.050 3.950 15 C 0.498 3.502 16 O -0.531 6.531 17 N -0.705 5.705 18 C 0.251 3.749 19 C -0.546 4.546 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.393 0.607 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 26.321 1.615 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.031 3.969 3 C -0.151 4.151 4 C -0.039 4.039 5 C -0.148 4.148 6 N 0.548 4.452 7 O -0.376 6.376 8 O -0.363 6.363 9 C -0.009 4.009 10 C -0.128 4.128 11 C 0.356 3.644 12 O -0.383 6.383 13 O -0.236 6.236 14 C -0.027 4.027 15 C 0.280 3.720 16 O -0.408 6.408 17 N -0.355 5.355 18 C 0.131 3.869 19 C -0.584 4.584 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.207 1.207 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.192 0.808 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.226 0.774 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.017 26.234 1.543 27.475 hybrid contribution -0.562 -1.059 0.065 1.201 sum -8.580 25.175 1.608 26.646 Atomic orbital electron populations 1.21329 0.88216 1.04562 1.04874 1.20544 0.98217 0.90888 0.87224 1.21088 0.92378 0.98608 1.03075 1.21327 0.94703 0.97446 0.90391 1.20992 0.80270 0.96551 1.17014 1.43512 1.03186 1.00690 0.97772 1.94528 1.69451 1.20030 1.53600 1.94641 1.67968 1.21001 1.52649 1.21491 0.93568 0.98657 0.87144 1.18848 0.91915 0.91360 1.10678 1.20733 0.85768 0.84364 0.73546 1.90820 1.14352 1.87609 1.45476 1.86596 1.40498 1.13953 1.82578 1.22977 0.93693 0.81157 1.04845 1.19833 0.88849 0.84106 0.79165 1.90736 1.15237 1.85533 1.49301 1.46367 1.11828 1.05695 1.71620 1.19203 0.89477 0.80364 0.97893 1.21227 0.93795 0.90479 1.52907 0.91723 1.24958 0.95051 0.99404 0.94592 1.69983 1.08165 1.25894 1.48018 0.86336 0.80033 0.82568 0.77823 1.19625 1.20748 1.20739 0.88961 0.90821 0.87791 0.82466 0.82205 0.80774 0.88114 0.88135 0.77403 0.95175 0.95165 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 8.73 36.00 0.31 -0.46 16 2 C 0.03 0.22 5.91 -104.22 -0.62 -0.39 16 3 C -0.13 -0.67 9.66 -39.64 -0.38 -1.05 16 4 C -0.02 -0.13 9.55 -39.49 -0.38 -0.51 16 5 C -0.07 -0.65 6.84 -80.01 -0.55 -1.20 16 6 N 0.03 0.35 4.45 33.93 0.15 0.50 16 7 O -0.16 -2.01 18.44 -29.46 -0.54 -2.55 16 8 O -0.14 -2.10 18.44 -29.46 -0.54 -2.64 16 9 C 0.01 0.11 9.12 -39.17 -0.36 -0.25 16 10 C -0.13 -1.23 5.87 -104.98 -0.62 -1.84 16 11 C 0.51 6.04 7.83 34.61 0.27 6.31 16 12 O -0.49 -5.92 13.14 -19.24 -0.25 -6.17 16 13 O -0.32 -4.58 9.03 -47.21 -0.43 -5.00 16 14 C 0.05 0.69 5.95 36.01 0.21 0.90 16 15 C 0.50 9.46 7.91 -10.99 -0.09 9.37 16 16 O -0.53 -12.53 16.50 -14.10 -0.23 -12.76 16 17 N -0.70 -13.95 5.55 -61.47 -0.34 -14.29 16 18 C 0.25 6.41 5.43 -5.19 -0.03 6.38 16 19 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 23 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.25 8.04 -51.93 -0.42 -0.17 16 29 H 0.10 0.80 5.86 -51.93 -0.30 0.50 16 30 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 31 H 0.16 0.73 7.60 -52.48 -0.40 0.33 16 32 H 0.17 2.06 7.17 -52.49 -0.38 1.68 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.39 6.44 8.32 -40.82 -0.34 6.10 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.73 348.90 -7.75 -41.48 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.91 Total: 1.40 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.63 Total: 4.24 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.55 Total: -38.64 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -2.00 Total: -29.13 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.73 -7.75 -41.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064163104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.838 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds