Wall clock time and date at job start Tue Mar 31 2020 12:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37963 * 120.07828 * 2 1 4 4 C 1.38345 * 120.15319 * 180.25651 * 3 2 1 5 5 C 1.38391 * 120.30274 * 359.49382 * 4 3 2 6 6 N 1.48011 * 119.92692 * 180.27890 * 5 4 3 7 7 O 1.21799 * 120.00088 * 359.97438 * 6 5 4 8 8 O 1.21795 * 120.00213 * 179.97438 * 6 5 4 9 9 C 1.37925 * 120.14945 * 0.24648 * 5 4 3 10 10 C 1.39606 * 120.07902 * 179.74987 * 2 1 3 11 11 C 1.47731 * 120.14921 * 359.97260 * 10 2 1 12 12 O 1.21470 * 120.00047 * 353.79837 * 11 10 2 13 13 O 1.34714 * 120.00255 * 173.79607 * 11 10 2 14 14 C 1.45196 * 116.99972 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47133 * 179.97438 * 14 13 11 16 16 O 1.21279 * 119.99610 * 0.02562 * 15 14 13 17 17 N 1.34769 * 119.99971 * 179.97438 * 15 14 13 18 18 C 1.46504 * 120.00059 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47075 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00360 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99583 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99812 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46981 * 120.00226 * 23 21 19 26 26 H 1.48493 * 109.47530 * 240.00292 * 23 21 19 27 27 H 1.09005 * 109.46646 * 263.67288 * 1 2 3 28 28 H 1.09000 * 109.47272 * 23.67258 * 1 2 3 29 29 H 1.08999 * 109.47028 * 143.67688 * 1 2 3 30 30 H 1.08002 * 119.92460 * 0.02562 * 3 2 1 31 31 H 1.08005 * 119.85201 * 179.76227 * 4 3 2 32 32 H 1.07999 * 120.07592 * 179.97438 * 9 5 4 33 33 H 1.09006 * 109.46878 * 299.99922 * 14 13 11 34 34 H 1.09000 * 109.47377 * 59.99679 * 14 13 11 35 35 H 0.97003 * 120.00430 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46552 * 299.99560 * 18 17 15 37 37 H 1.08995 * 109.46975 * 59.99796 * 18 17 15 38 38 H 0.97007 * 119.99716 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1957 -0.0054 5 6 4.2817 0.0018 -0.0002 6 7 5.7618 0.0135 0.0003 7 8 6.3624 1.0730 -0.0044 8 8 6.3791 -1.0364 0.0053 9 6 3.6031 -1.1990 0.0052 10 6 2.2066 -1.2080 0.0053 11 6 1.4731 -2.4904 0.0115 12 8 0.2638 -2.4977 0.1257 13 8 2.1453 -3.6515 -0.1095 14 6 1.3596 -4.8725 -0.0959 15 6 2.2751 -6.0606 -0.2419 16 8 3.4720 -5.8946 -0.3465 17 7 1.7640 -7.3076 -0.2551 18 6 2.6541 -8.4626 -0.3964 19 6 1.8387 -9.7299 -0.3811 20 1 0.7649 -9.6800 -0.2770 21 6 2.4636 -10.9531 -0.5011 22 7 3.7711 -11.0139 -0.6284 23 14 1.4530 -12.5240 -0.4815 24 1 0.0152 -12.1858 -0.3277 25 1 1.6548 -13.2583 -1.7565 26 1 1.8856 -13.3768 0.6546 27 1 -0.3633 -0.1133 1.0215 28 1 -0.3634 0.9412 -0.4126 29 1 -0.3633 -0.8280 -0.6087 30 1 1.6584 2.1292 0.0004 31 1 4.1182 2.1331 -0.0092 32 1 4.1505 -2.1300 0.0088 33 1 0.8171 -4.9449 0.8468 34 1 0.6500 -4.8572 -0.9232 35 1 0.8069 -7.4404 -0.1702 36 1 3.1962 -8.3903 -1.3392 37 1 3.3638 -8.4777 0.4307 38 1 4.2108 -11.8745 -0.7124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064163104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:17 Heat of formation + Delta-G solvation = -118.018375 kcal Electronic energy + Delta-G solvation = -25667.892987 eV Core-core repulsion = 21478.307454 eV Total energy + Delta-G solvation = -4189.585532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.36598 -42.12962 -40.75853 -40.02742 -37.78365 -37.75466 -36.21959 -34.44474 -34.44316 -33.15935 -30.85173 -29.76374 -28.56102 -26.50904 -25.56865 -24.61698 -23.29482 -22.34698 -21.69387 -20.53326 -19.86485 -19.19152 -18.85531 -18.69935 -17.97669 -17.87334 -17.18795 -16.99425 -16.83487 -16.60821 -16.32012 -15.97851 -15.28060 -15.13245 -14.75557 -14.34846 -14.15816 -13.89100 -13.72131 -13.50377 -13.36133 -13.32090 -13.20859 -12.92488 -12.77182 -12.77082 -12.38254 -12.37790 -12.23510 -12.01058 -11.49030 -11.46297 -10.95653 -10.84840 -10.71204 -10.50438 -9.96197 -8.31057 -6.47906 -1.39365 -0.78882 0.10406 0.23526 1.03741 1.09614 1.43693 1.44233 1.51926 1.57891 2.11183 2.29228 2.47553 3.04455 3.05198 3.24736 3.35974 3.54584 3.59726 3.71616 3.84588 3.99968 4.01656 4.34472 4.39700 4.55983 4.58657 4.73140 4.92092 4.97858 5.05661 5.07180 5.19518 5.22092 5.39445 5.44319 5.60759 5.80391 6.33234 6.35870 6.61413 6.74863 7.18874 7.33853 8.81340 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.002383 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.638776 B =11744.795798 C =13232.305460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.042 3.958 3 C -0.107 4.107 4 C -0.006 4.006 5 C -0.080 4.080 6 N 0.030 4.970 7 O -0.130 6.130 8 O -0.225 6.225 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.512 3.488 12 O -0.493 6.493 13 O -0.348 6.348 14 C 0.064 3.936 15 C 0.496 3.504 16 O -0.585 6.585 17 N -0.697 5.697 18 C 0.266 3.734 19 C -0.555 4.555 20 H 0.088 0.912 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.986 3.014 24 H -0.251 1.251 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.209 0.791 31 H 0.189 0.811 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.414 0.586 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 29.168 1.856 31.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.042 3.958 3 C -0.125 4.125 4 C -0.025 4.025 5 C -0.163 4.163 6 N 0.545 4.455 7 O -0.358 6.358 8 O -0.425 6.425 9 C -0.024 4.024 10 C -0.143 4.143 11 C 0.357 3.643 12 O -0.383 6.383 13 O -0.264 6.264 14 C -0.013 4.013 15 C 0.282 3.718 16 O -0.466 6.466 17 N -0.348 5.348 18 C 0.143 3.857 19 C -0.593 4.593 20 H 0.106 0.894 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.809 3.191 24 H -0.174 1.174 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.226 0.774 31 H 0.206 0.794 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.250 0.750 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.029 28.956 1.793 31.406 hybrid contribution 0.615 -1.672 -0.011 1.782 sum -11.415 27.283 1.783 29.629 Atomic orbital electron populations 1.21378 0.86819 1.05736 1.04931 1.20880 0.99129 0.90320 0.85517 1.21630 0.91433 0.99544 0.99903 1.21782 0.95486 0.96825 0.88382 1.21138 0.78224 0.97793 1.19188 1.43893 1.04483 1.00147 0.96933 1.94461 1.70460 1.19738 1.51102 1.94663 1.69211 1.21597 1.56996 1.21267 0.94169 0.98148 0.88773 1.18856 0.91302 0.91554 1.12557 1.21030 0.85898 0.84118 0.73206 1.90818 1.14184 1.87555 1.45754 1.86596 1.41708 1.14829 1.83253 1.22831 0.91915 0.78898 1.07632 1.20755 0.88879 0.85147 0.77044 1.90716 1.18108 1.86401 1.51347 1.46015 1.12189 1.04890 1.71744 1.18633 0.89731 0.82946 0.94361 1.21635 0.94873 0.90520 1.52228 0.89415 1.26080 0.96140 1.03599 0.93873 1.70148 1.10477 1.27003 1.49341 0.85092 0.79069 0.77312 0.77626 1.17440 1.20562 1.20572 0.88510 0.87240 0.89742 0.77410 0.79370 0.83758 0.85100 0.85034 0.74971 0.99071 0.99092 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.73 71.23 0.62 -0.37 16 2 C 0.04 0.45 5.91 -19.60 -0.12 0.33 16 3 C -0.11 -0.52 9.66 22.23 0.21 -0.30 16 4 C -0.01 -0.06 9.55 22.33 0.21 0.16 16 5 C -0.08 -1.56 6.84 36.34 0.25 -1.32 16 6 N 0.03 0.78 4.45 -46.56 -0.21 0.58 16 7 O -0.13 -3.16 18.44 18.89 0.35 -2.81 16 8 O -0.22 -7.37 18.44 18.89 0.35 -7.02 16 9 C 0.00 -0.09 9.12 22.54 0.21 0.12 16 10 C -0.14 -2.64 5.87 -20.10 -0.12 -2.75 16 11 C 0.51 11.84 7.83 70.33 0.55 12.39 16 12 O -0.49 -10.97 13.14 19.93 0.26 -10.71 16 13 O -0.35 -10.18 9.03 -49.85 -0.45 -10.63 16 14 C 0.06 1.69 5.95 71.24 0.42 2.12 16 15 C 0.50 19.51 7.91 87.66 0.69 20.21 16 16 O -0.59 -29.64 16.50 15.77 0.26 -29.38 16 17 N -0.70 -28.19 5.55 -466.79 -2.59 -30.78 16 18 C 0.27 14.32 5.43 85.63 0.46 14.79 16 19 C -0.55 -29.48 9.28 25.60 0.24 -29.24 16 20 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 21 C 0.00 0.15 5.46 84.65 0.46 0.61 16 22 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 23 Si 0.99 41.74 29.54 68.60 2.03 43.77 16 24 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 27 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.11 0.08 8.04 -2.39 -0.02 0.06 16 29 H 0.08 1.05 5.86 -2.39 -0.01 1.03 16 30 H 0.21 -0.96 8.06 -2.91 -0.02 -0.99 16 31 H 0.19 0.78 7.60 -2.91 -0.02 0.76 16 32 H 0.14 4.03 7.17 -2.91 -0.02 4.01 16 33 H 0.13 2.73 8.14 -2.38 -0.02 2.71 16 34 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.41 13.16 8.32 -92.71 -0.77 12.39 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -80.96 348.90 4.75 -76.21 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.36 Total: 9.66 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 4.10 Total: 16.74 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.51 Total: -85.84 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: 0.77 Total: -60.54 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -80.96 4.75 -76.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064163104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.806 kcal (2) G-P(sol) polarization free energy of solvation -80.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds