Wall clock time and date at job start Tue Mar 31 2020 13:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36005 * 117.00019 * 2 1 4 4 C 1.38486 * 120.08422 * 0.02562 * 3 2 1 5 5 C 1.38295 * 120.02616 * 180.02562 * 4 3 2 6 6 C 1.38275 * 120.19147 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16384 * 0.02562 * 6 5 4 8 8 C 1.38799 * 119.97642 * 359.70625 * 7 6 5 9 9 S 1.76194 * 120.09721 * 180.27633 * 8 7 6 10 10 C 1.81395 * 103.00103 * 0.29136 * 9 8 7 11 11 C 1.50704 * 109.47485 * 179.97438 * 10 9 8 12 12 O 1.20834 * 119.99585 * 0.02562 * 11 10 9 13 13 O 1.34223 * 120.00462 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00212 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47371 * 180.02562 * 14 13 11 16 16 C 1.50690 * 115.54919 * 65.10418 * 15 14 13 17 17 H 1.08002 * 120.00443 * 266.10795 * 16 15 14 18 18 C 1.37877 * 120.00004 * 86.11336 * 16 15 14 19 19 N 1.31513 * 120.00281 * 353.70144 * 18 16 15 20 20 Si 1.86806 * 120.00297 * 173.69790 * 18 16 15 21 21 H 1.48497 * 109.46952 * 90.00180 * 20 18 16 22 22 H 1.48496 * 109.47273 * 209.99865 * 20 18 16 23 23 H 1.48501 * 109.46815 * 330.00235 * 20 18 16 24 24 C 1.53002 * 117.49370 * 279.43811 * 15 14 13 25 25 C 1.53002 * 117.49722 * 210.77768 * 15 14 13 26 26 H 1.09000 * 109.46993 * 299.99105 * 1 2 3 27 27 H 1.08996 * 109.47795 * 59.99306 * 1 2 3 28 28 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.98195 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.90872 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.91668 * 179.97438 * 6 5 4 32 32 H 1.08004 * 120.01541 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.47370 * 299.99832 * 10 9 8 34 34 H 1.08998 * 109.47331 * 60.00045 * 10 9 8 35 35 H 1.09005 * 109.47195 * 300.00309 * 14 13 11 36 36 H 1.09001 * 109.47026 * 60.00266 * 14 13 11 37 37 H 0.96998 * 120.00981 * 180.02562 * 19 18 16 38 38 H 1.08996 * 117.50201 * 359.97438 * 24 15 14 39 39 H 1.08997 * 117.49401 * 145.02361 * 24 15 14 40 40 H 1.08999 * 117.49843 * 214.97000 * 25 15 14 41 41 H 1.09000 * 117.50325 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9230 3.6059 0.0000 6 6 3.3036 3.6815 -0.0005 7 6 4.0623 2.5264 -0.0011 8 6 3.4381 1.2867 0.0051 9 16 4.4023 -0.1880 0.0118 10 6 6.1049 0.4377 0.0171 11 6 7.0666 -0.7226 0.0238 12 8 6.6463 -1.8555 0.0244 13 8 8.3898 -0.4977 0.0281 14 6 9.2565 -1.6626 0.0338 15 6 10.7183 -1.2108 0.0388 16 6 11.1653 -0.4696 1.2723 17 1 11.1354 0.6098 1.2943 18 6 11.6127 -1.1694 2.3728 19 7 11.5338 -2.4820 2.3941 20 14 12.3310 -0.2532 3.8337 21 1 11.2467 0.0755 4.7936 22 1 13.3437 -1.1074 4.5044 23 1 12.9736 1.0006 3.3642 24 6 11.3327 -0.7923 -1.2985 25 6 11.7403 -2.1176 -0.6499 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2153 2.3191 0.0005 30 1 1.3342 4.5114 0.0000 31 1 3.7903 4.6456 -0.0014 32 1 5.1406 2.5882 -0.0019 33 1 6.2722 1.0435 -0.8734 34 1 6.2653 1.0471 0.9065 35 1 9.0578 -2.2589 0.9245 36 1 9.0643 -2.2628 -0.8555 37 1 11.8481 -2.9744 3.1685 38 1 10.6958 -0.8392 -2.1817 39 1 12.0607 0.0189 -1.2859 40 1 12.7362 -2.1777 -0.2109 41 1 11.3714 -3.0363 -1.1060 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849749962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:46 Heat of formation + Delta-G solvation = -64.905353 kcal Electronic energy + Delta-G solvation = -23641.482204 eV Core-core repulsion = 20000.493039 eV Total energy + Delta-G solvation = -3640.989165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27119 -39.81902 -37.59754 -36.85192 -35.32371 -31.98990 -31.74047 -30.64672 -30.07545 -27.56169 -26.68229 -25.23389 -23.15476 -22.46062 -21.28187 -20.68399 -19.30804 -18.72469 -17.30046 -17.19306 -16.47860 -16.33106 -16.10096 -15.96172 -15.41752 -15.23062 -14.65962 -14.47874 -14.01045 -13.94594 -13.76087 -13.49835 -13.13274 -12.85502 -12.37476 -12.14738 -12.02604 -11.99455 -11.66274 -11.40850 -11.28011 -11.00157 -10.90404 -10.55884 -10.32791 -10.17459 -10.14784 -9.98102 -9.91281 -9.61708 -8.86034 -8.74841 -8.49532 -8.25312 -7.33015 -6.09682 -4.15453 0.92211 1.14510 1.18268 2.32002 2.58183 2.99733 3.23918 3.27690 3.34408 3.37500 3.41735 4.36814 4.49627 4.59351 4.80234 4.85622 4.90233 4.94165 4.97404 5.04417 5.19018 5.19958 5.21345 5.26923 5.42415 5.48557 5.84849 5.93593 5.98953 6.19847 6.21439 6.29009 6.43145 6.47581 6.59077 6.69717 7.00373 7.06054 7.14491 7.32216 7.42968 7.83513 8.22852 8.36615 8.86369 9.50782 10.99610 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002636 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.398602 B =10620.102951 C =11032.209925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.144 3.856 4 C -0.192 4.192 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.100 4.100 8 C -0.132 4.132 9 S -0.007 6.007 10 C -0.134 4.134 11 C 0.473 3.527 12 O -0.503 6.503 13 O -0.331 6.331 14 C 0.116 3.884 15 C 0.036 3.964 16 C -0.492 4.492 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.205 4.205 25 C -0.143 4.143 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.223 10.133 -5.662 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.093 3.907 4 C -0.212 4.212 5 C -0.111 4.111 6 C -0.155 4.155 7 C -0.124 4.124 8 C -0.245 4.245 9 S 0.237 5.763 10 C -0.282 4.282 11 C 0.314 3.686 12 O -0.392 6.392 13 O -0.246 6.246 14 C 0.043 3.957 15 C 0.036 3.964 16 C -0.530 4.530 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.243 4.243 25 C -0.181 4.181 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.392 8.155 -5.539 22.650 hybrid contribution 0.534 1.810 0.879 2.082 sum -19.858 9.965 -4.660 22.702 Atomic orbital electron populations 1.23082 0.78268 1.04202 1.01208 1.86182 1.21320 1.26152 1.88281 1.18327 0.90080 0.84877 0.97391 1.21138 0.99892 0.91981 1.08230 1.20957 0.94649 0.96928 0.98532 1.20994 0.93861 0.98120 1.02517 1.21109 1.00129 0.90755 1.00419 1.21387 0.94141 0.98752 1.10243 1.86448 0.94730 1.03381 1.91745 1.23444 0.95121 1.00697 1.08962 1.22230 0.83756 0.88885 0.73711 1.90677 1.79042 1.24013 1.45455 1.86499 1.15094 1.41083 1.81925 1.23013 0.88689 0.83514 1.00476 1.18777 0.86857 0.99337 0.91436 1.20378 1.43295 0.92666 0.96624 0.91852 1.25021 0.95271 0.94871 0.98271 1.69991 1.45763 1.05868 1.30056 0.86588 0.79071 0.79828 0.82531 1.20571 1.21121 1.19724 1.23023 1.04889 0.99121 0.97223 1.22541 1.00756 0.91741 1.03023 0.92613 0.92640 0.88020 0.85084 0.85610 0.85433 0.84932 0.85715 0.85497 0.90373 0.94025 0.92830 0.91512 0.90017 0.89345 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.62 9.87 -19.76 -0.19 -3.82 16 3 C 0.14 1.71 6.69 -39.07 -0.26 1.45 16 4 C -0.19 -1.77 9.04 -39.47 -0.36 -2.12 16 5 C -0.09 -0.75 10.04 -39.55 -0.40 -1.15 16 6 C -0.14 -1.22 10.04 -39.58 -0.40 -1.62 16 7 C -0.10 -1.08 9.36 -39.39 -0.37 -1.44 16 8 C -0.13 -1.68 6.12 -38.95 -0.24 -1.92 16 9 S -0.01 -0.10 20.55 -107.50 -2.21 -2.31 16 10 C -0.13 -1.89 4.93 36.01 0.18 -1.71 16 11 C 0.47 9.04 7.98 36.01 0.29 9.33 16 12 O -0.50 -10.92 15.61 -18.76 -0.29 -11.22 16 13 O -0.33 -7.11 10.16 -39.24 -0.40 -7.51 16 14 C 0.12 2.74 5.28 37.16 0.20 2.94 16 15 C 0.04 0.90 1.62 -155.66 -0.25 0.64 16 16 C -0.49 -13.28 8.77 -34.45 -0.30 -13.58 16 17 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 18 C 0.07 1.87 5.38 -17.82 -0.10 1.78 16 19 N -0.88 -24.72 12.88 55.43 0.71 -24.00 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 25 C -0.14 -3.29 9.37 -26.69 -0.25 -3.54 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 30 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.25 5.88 -52.48 -0.31 0.94 16 33 H 0.12 1.43 7.74 -51.93 -0.40 1.03 16 34 H 0.13 1.57 7.76 -51.93 -0.40 1.16 16 35 H 0.08 2.04 8.13 -51.93 -0.42 1.62 16 36 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -31.80 366.50 -9.00 -40.80 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.59 Total: 1.10 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.53 Total: -14.45 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.71 Total: -24.00 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.89 Total: -22.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.21 Total: -2.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.80 -9.00 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849749962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.108 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds