Wall clock time and date at job start Tue Mar 31 2020 13:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36005 * 117.00019 * 2 1 4 4 C 1.38486 * 120.08422 * 0.02562 * 3 2 1 5 5 C 1.38295 * 120.02616 * 180.02562 * 4 3 2 6 6 C 1.38275 * 120.19147 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16384 * 0.02562 * 6 5 4 8 8 C 1.38799 * 119.97642 * 359.70625 * 7 6 5 9 9 S 1.76194 * 120.09721 * 180.27633 * 8 7 6 10 10 C 1.81395 * 103.00103 * 0.29136 * 9 8 7 11 11 C 1.50704 * 109.47485 * 179.97438 * 10 9 8 12 12 O 1.20834 * 119.99585 * 0.02562 * 11 10 9 13 13 O 1.34223 * 120.00462 * 179.97438 * 11 10 9 14 14 C 1.45194 * 117.00212 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47371 * 180.02562 * 14 13 11 16 16 C 1.50690 * 115.54919 * 65.10418 * 15 14 13 17 17 H 1.08002 * 120.00443 * 266.10795 * 16 15 14 18 18 C 1.37877 * 120.00004 * 86.11336 * 16 15 14 19 19 N 1.31513 * 120.00281 * 353.70144 * 18 16 15 20 20 Si 1.86806 * 120.00297 * 173.69790 * 18 16 15 21 21 H 1.48497 * 109.46952 * 90.00180 * 20 18 16 22 22 H 1.48496 * 109.47273 * 209.99865 * 20 18 16 23 23 H 1.48501 * 109.46815 * 330.00235 * 20 18 16 24 24 C 1.53002 * 117.49370 * 279.43811 * 15 14 13 25 25 C 1.53002 * 117.49722 * 210.77768 * 15 14 13 26 26 H 1.09000 * 109.46993 * 299.99105 * 1 2 3 27 27 H 1.08996 * 109.47795 * 59.99306 * 1 2 3 28 28 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.98195 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.90872 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.91668 * 179.97438 * 6 5 4 32 32 H 1.08004 * 120.01541 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.47370 * 299.99832 * 10 9 8 34 34 H 1.08998 * 109.47331 * 60.00045 * 10 9 8 35 35 H 1.09005 * 109.47195 * 300.00309 * 14 13 11 36 36 H 1.09001 * 109.47026 * 60.00266 * 14 13 11 37 37 H 0.96998 * 120.00981 * 180.02562 * 19 18 16 38 38 H 1.08996 * 117.50201 * 359.97438 * 24 15 14 39 39 H 1.08997 * 117.49401 * 145.02361 * 24 15 14 40 40 H 1.08999 * 117.49843 * 214.97000 * 25 15 14 41 41 H 1.09000 * 117.50325 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2939 2.3744 0.0005 5 6 1.9230 3.6059 0.0000 6 6 3.3036 3.6815 -0.0005 7 6 4.0623 2.5264 -0.0011 8 6 3.4381 1.2867 0.0051 9 16 4.4023 -0.1880 0.0118 10 6 6.1049 0.4377 0.0171 11 6 7.0666 -0.7226 0.0238 12 8 6.6463 -1.8555 0.0244 13 8 8.3898 -0.4977 0.0281 14 6 9.2565 -1.6626 0.0338 15 6 10.7183 -1.2108 0.0388 16 6 11.1653 -0.4696 1.2723 17 1 11.1354 0.6098 1.2943 18 6 11.6127 -1.1694 2.3728 19 7 11.5338 -2.4820 2.3941 20 14 12.3310 -0.2532 3.8337 21 1 11.2467 0.0755 4.7936 22 1 13.3437 -1.1074 4.5044 23 1 12.9736 1.0006 3.3642 24 6 11.3327 -0.7923 -1.2985 25 6 11.7403 -2.1176 -0.6499 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2153 2.3191 0.0005 30 1 1.3342 4.5114 0.0000 31 1 3.7903 4.6456 -0.0014 32 1 5.1406 2.5882 -0.0019 33 1 6.2722 1.0435 -0.8734 34 1 6.2653 1.0471 0.9065 35 1 9.0578 -2.2589 0.9245 36 1 9.0643 -2.2628 -0.8555 37 1 11.8481 -2.9744 3.1685 38 1 10.6958 -0.8392 -2.1817 39 1 12.0607 0.0189 -1.2859 40 1 12.7362 -2.1777 -0.2109 41 1 11.3714 -3.0363 -1.1060 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849749962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:45 Heat of formation + Delta-G solvation = -81.348792 kcal Electronic energy + Delta-G solvation = -23642.195245 eV Core-core repulsion = 20000.493039 eV Total energy + Delta-G solvation = -3641.702206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46073 -40.99270 -38.64668 -38.32129 -37.04839 -34.03387 -32.59907 -31.64070 -30.95691 -28.54004 -28.10419 -27.23812 -23.90777 -23.30747 -22.98918 -22.15698 -21.21810 -19.60493 -18.76669 -18.38320 -18.03353 -17.64566 -17.11831 -16.89456 -16.70722 -16.57245 -16.15200 -15.70848 -15.29344 -15.16674 -14.69224 -14.64577 -14.37656 -13.93287 -13.84076 -13.57379 -13.54586 -12.98760 -12.92425 -12.84549 -12.69076 -12.39504 -12.10457 -12.03676 -12.02580 -11.77124 -11.74421 -11.46500 -11.15628 -10.79829 -10.76375 -10.50549 -10.10735 -9.49677 -8.35277 -8.14962 -6.26581 0.08721 0.17788 0.40985 1.06132 1.32066 1.41386 1.43014 1.53065 1.76041 2.35329 2.41669 2.69609 3.13886 3.35130 3.67265 3.81960 3.84036 3.98286 4.08210 4.12053 4.24292 4.35956 4.37711 4.39363 4.39500 4.45465 4.54685 4.63641 4.72833 4.79529 4.80634 4.96517 5.14785 5.17796 5.32473 5.40591 5.51619 5.55643 5.61806 5.73816 5.77764 6.33856 6.37215 6.64703 6.79261 7.42601 8.93854 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002636 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.398602 B =10620.102951 C =11032.209925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.126 3.874 4 C -0.193 4.193 5 C -0.082 4.082 6 C -0.139 4.139 7 C -0.107 4.107 8 C -0.151 4.151 9 S -0.067 6.067 10 C -0.114 4.114 11 C 0.470 3.530 12 O -0.533 6.533 13 O -0.337 6.337 14 C 0.128 3.872 15 C 0.003 3.997 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.176 4.176 25 C -0.146 4.146 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.261 0.739 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.507 13.077 -6.132 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.075 3.925 4 C -0.213 4.213 5 C -0.103 4.103 6 C -0.158 4.158 7 C -0.131 4.131 8 C -0.265 4.265 9 S 0.176 5.824 10 C -0.262 4.262 11 C 0.313 3.687 12 O -0.424 6.424 13 O -0.253 6.253 14 C 0.055 3.945 15 C 0.003 3.997 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.213 4.213 25 C -0.184 4.184 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.697 11.133 -6.019 25.118 hybrid contribution 0.771 0.965 0.995 1.586 sum -20.926 12.099 -5.024 24.688 Atomic orbital electron populations 1.23356 0.76171 1.05439 1.02574 1.86146 1.23685 1.26793 1.88450 1.18646 0.90112 0.85800 0.97904 1.21484 1.01171 0.91348 1.07270 1.21428 0.94786 0.97817 0.96231 1.21366 0.94355 0.98517 1.01587 1.21347 1.00925 0.90635 1.00212 1.21377 0.94275 0.97763 1.13043 1.86581 0.96109 1.06831 1.92901 1.23386 0.92983 0.98557 1.11266 1.23113 0.83282 0.90034 0.72267 1.90662 1.79230 1.25805 1.46693 1.86495 1.16293 1.40095 1.82383 1.22613 0.88930 0.83897 0.99095 1.18873 0.87474 1.00953 0.92425 1.20653 1.43192 0.92627 0.97873 0.92402 1.25742 0.95692 0.95576 1.00797 1.70103 1.46744 1.07141 1.30750 0.85643 0.78288 0.78904 0.79384 1.20430 1.20904 1.18805 1.23034 1.04004 0.97966 0.96288 1.22483 0.99514 0.93078 1.03305 0.91253 0.91103 0.87055 0.82523 0.82287 0.82864 0.84025 0.82691 0.83562 0.94062 0.93048 0.92988 0.88984 0.89440 0.91105 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.92 9.87 -93.61 -0.92 -8.85 16 3 C 0.13 2.88 6.69 22.60 0.15 3.03 16 4 C -0.19 -3.04 9.04 22.34 0.20 -2.84 16 5 C -0.08 -1.08 10.04 22.29 0.22 -0.85 16 6 C -0.14 -2.06 10.04 22.27 0.22 -1.84 16 7 C -0.11 -2.11 9.36 22.39 0.21 -1.91 16 8 C -0.15 -3.78 6.12 22.68 0.14 -3.64 16 9 S -0.07 -2.03 20.55 -56.49 -1.16 -3.19 16 10 C -0.11 -3.14 4.93 71.24 0.35 -2.79 16 11 C 0.47 18.14 7.98 71.24 0.57 18.71 16 12 O -0.53 -23.93 15.61 21.94 0.34 -23.59 16 13 O -0.34 -14.55 10.16 -51.35 -0.52 -15.07 16 14 C 0.13 6.17 5.28 71.98 0.38 6.55 16 15 C 0.00 0.16 1.62 -52.93 -0.09 0.08 16 16 C -0.51 -27.47 8.77 25.60 0.22 -27.24 16 17 H 0.06 3.12 7.82 -2.91 -0.02 3.09 16 18 C 0.02 1.22 5.38 84.65 0.46 1.68 16 19 N -0.91 -52.17 12.88 21.45 0.28 -51.89 16 20 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 C -0.18 -7.29 9.96 30.62 0.30 -6.99 16 25 C -0.15 -6.71 9.37 30.62 0.29 -6.43 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.16 1.54 6.30 -2.91 -0.02 1.52 16 30 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.14 2.37 5.88 -2.91 -0.02 2.35 16 33 H 0.16 3.29 7.74 -2.39 -0.02 3.27 16 34 H 0.15 3.44 7.76 -2.39 -0.02 3.43 16 35 H 0.04 2.25 8.13 -2.38 -0.02 2.23 16 36 H 0.05 2.31 8.09 -2.39 -0.02 2.29 16 37 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.07 3.46 8.14 -2.39 -0.02 3.45 16 41 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -70.75 366.50 5.82 -64.92 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.04 Total: 15.67 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 4.75 Total: -23.15 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.28 Total: -51.89 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.10 Total: -47.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -1.16 Total: -3.19 kcal Total: -70.75 5.82 -64.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849749962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.424 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds