Wall clock time and date at job start Tue Mar 31 2020 12:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30041 * 126.17890 * 2 1 4 4 O 1.21285 * 110.51201 * 179.68754 * 3 2 1 5 5 C 1.34243 * 109.68655 * 0.43758 * 4 3 2 6 6 C 1.47539 * 126.68746 * 179.84217 * 5 4 3 7 7 C 1.39897 * 120.60048 * 179.66426 * 6 5 4 8 8 C 1.38406 * 118.36526 * 180.02562 * 7 6 5 9 9 C 1.38326 * 119.49018 * 359.97438 * 8 7 6 10 10 N 1.31887 * 121.19844 * 359.72332 * 9 8 7 11 11 C 1.32359 * 121.77618 * 0.56500 * 10 9 8 12 12 N 1.38658 * 119.81280 * 179.71052 * 11 10 9 13 13 C 1.38420 * 120.00091 * 354.40679 * 12 11 10 14 14 C 1.38953 * 120.00102 * 301.63462 * 13 12 11 15 15 H 1.08002 * 119.99761 * 152.00318 * 14 13 12 16 16 C 1.40861 * 119.99955 * 332.00171 * 14 13 12 17 17 N 1.30329 * 119.99675 * 2.89427 * 16 14 13 18 18 Si 1.86789 * 120.00064 * 182.88790 * 16 14 13 19 19 H 1.48508 * 109.47459 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47062 * 120.00173 * 18 16 14 21 21 H 1.48503 * 109.47688 * 240.00279 * 18 16 14 22 22 C 1.41139 * 119.99754 * 121.63416 * 13 12 11 23 23 C 1.43206 * 119.99656 * 174.78377 * 22 13 12 24 24 N 9.13886 * 157.60209 * 350.13327 * 2 1 3 25 25 C 1.43199 * 120.00193 * 354.50148 * 22 13 12 26 26 N 6.22740 * 141.54940 * 308.31855 * 2 1 3 27 27 N 1.32240 * 106.62089 * 359.57084 * 5 4 3 28 28 H 1.08997 * 109.47348 * 270.04267 * 1 2 3 29 29 H 1.09005 * 109.46983 * 30.04484 * 1 2 3 30 30 H 1.08997 * 109.47016 * 150.03625 * 1 2 3 31 31 H 1.08005 * 120.81641 * 359.97438 * 7 6 5 32 32 H 1.08006 * 120.25459 * 179.97438 * 8 7 6 33 33 H 1.07999 * 119.40465 * 180.02562 * 9 8 7 34 34 H 0.96999 * 119.99777 * 174.40318 * 12 11 10 35 35 H 0.97004 * 119.99423 * 185.00207 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4425 0.7222 0.0062 5 6 3.5366 -0.6170 0.0013 6 6 4.7787 -1.4133 0.0027 7 6 4.7282 -2.8114 0.0041 8 6 5.9216 -3.5124 0.0060 9 6 7.1186 -2.8191 0.0060 10 7 7.1444 -1.5005 -0.0013 11 6 6.0331 -0.7816 0.0022 12 7 6.1077 0.6029 0.0004 13 6 7.3367 1.2300 0.1117 14 6 8.1422 0.9886 1.2179 15 1 9.2155 1.0749 1.1335 16 6 7.5590 0.6313 2.4493 17 7 6.2684 0.4721 2.5372 18 14 8.6352 0.3856 3.9561 19 1 10.0555 0.6248 3.5944 20 1 8.2273 1.3416 5.0169 21 1 8.4784 -1.0042 4.4553 22 6 7.7716 2.1145 -0.8985 23 6 8.9900 2.8484 -0.7316 24 7 9.9565 3.4307 -0.5967 25 6 6.9978 2.2737 -2.0928 26 7 6.3840 2.4010 -3.0382 27 7 2.2992 -1.0832 0.0008 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3633 -0.8903 -0.5133 31 1 3.7813 -3.3309 0.0045 32 1 5.9183 -4.5924 0.0075 33 1 8.0490 -3.3675 0.0070 34 1 5.2986 1.1321 -0.0790 35 1 5.8589 0.2977 3.3991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:11 Heat of formation + Delta-G solvation = 171.488392 kcal Electronic energy + Delta-G solvation = -26211.644918 eV Core-core repulsion = 22406.507763 eV Total energy + Delta-G solvation = -3805.137155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.22860 -40.06544 -37.33215 -35.87031 -35.27730 -34.73459 -34.00265 -33.49423 -31.58801 -31.03896 -29.04209 -28.68149 -27.12433 -24.77612 -23.41267 -22.73592 -21.31789 -21.20794 -19.08119 -17.85633 -17.62591 -17.50303 -17.28306 -16.35439 -16.05193 -15.72803 -14.91228 -14.39533 -13.95036 -13.75407 -13.62855 -13.54000 -13.17218 -12.83624 -12.74522 -12.58124 -12.31734 -12.24650 -11.95482 -11.87589 -11.68917 -11.59729 -11.51518 -11.43390 -11.03213 -10.93554 -10.80940 -10.75735 -10.37311 -10.15138 -10.08326 -9.14622 -9.10802 -8.21568 -7.76322 -7.06385 -5.42252 0.69569 1.63673 1.88006 2.24876 2.58711 2.71028 2.79814 2.86403 2.90099 3.41279 3.62439 3.75446 3.87678 4.06576 4.18042 4.21384 4.30161 4.34028 4.83480 4.97772 5.12521 5.18395 5.32082 5.32724 5.42046 5.44468 5.55127 5.67116 5.78568 6.02805 6.06537 6.22565 6.23242 6.35855 6.38521 6.71791 7.06953 7.25865 7.54759 7.74879 7.92166 8.20068 8.35730 8.67920 8.94807 9.13311 9.22609 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.005760 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.961890 B = 4859.629179 C = 5697.777400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.169 3.831 3 N -0.387 5.387 4 O 0.068 5.932 5 C 0.266 3.734 6 C -0.170 4.170 7 C 0.022 3.978 8 C -0.257 4.257 9 C 0.183 3.817 10 N -0.511 5.511 11 C 0.488 3.512 12 N -0.621 5.621 13 C 0.382 3.618 14 C -0.351 4.351 15 H 0.113 0.887 16 C 0.073 3.927 17 N -0.738 5.738 18 Si 0.930 3.070 19 H -0.247 1.247 20 H -0.264 1.264 21 H -0.264 1.264 22 C -0.304 4.304 23 C 0.328 3.672 24 N -0.531 5.531 25 C 0.307 3.693 26 N -0.531 5.531 27 N -0.497 5.497 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.409 0.591 35 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -11.135 4.839 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.105 4.105 3 N -0.100 5.100 4 O 0.014 5.986 5 C 0.050 3.950 6 C -0.181 4.181 7 C -0.005 4.005 8 C -0.280 4.280 9 C 0.020 3.980 10 N -0.226 5.226 11 C 0.249 3.751 12 N -0.245 5.245 13 C 0.279 3.721 14 C -0.379 4.379 15 H 0.131 0.869 16 C -0.156 4.156 17 N -0.357 5.357 18 Si 0.752 3.248 19 H -0.170 1.170 20 H -0.189 1.189 21 H -0.188 1.188 22 C -0.323 4.323 23 C 0.020 3.980 24 N -0.213 5.213 25 C -0.001 4.001 26 N -0.213 5.213 27 N -0.232 5.232 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.251 0.749 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.077 -9.037 3.710 12.062 hybrid contribution -0.929 -0.645 1.134 1.601 sum -8.005 -9.682 4.844 13.464 Atomic orbital electron populations 1.20082 0.83233 1.04377 1.03999 1.25717 1.00313 0.83848 1.00586 1.74604 0.89053 1.23810 1.22531 1.85206 1.22336 1.24345 1.66674 1.26021 0.94092 0.81299 0.93570 1.17396 0.85964 0.92544 1.22166 1.21246 0.99375 0.90550 0.89333 1.21671 0.92688 1.01064 1.12576 1.22762 0.97982 0.88996 0.88304 1.67530 1.28034 1.07550 1.19503 1.17944 0.87230 0.85046 0.84866 1.41898 1.09264 1.01813 1.71534 1.16754 0.80956 0.85560 0.88876 1.20197 0.97108 1.29033 0.91524 0.86881 1.26563 0.95824 0.90592 1.02668 1.69504 1.11741 1.25150 1.29352 0.85820 0.81290 0.79411 0.78293 1.16962 1.18869 1.18811 1.12909 1.00132 1.22149 0.97061 1.24604 0.91019 0.90704 0.91720 1.81072 1.13940 1.15684 1.10569 1.25179 0.92035 0.91250 0.91598 1.80996 1.12831 1.14516 1.12934 1.72074 0.98840 1.28688 1.23559 0.89568 0.89686 0.89278 0.84240 0.84739 0.82424 0.74875 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 36.01 0.38 -0.22 16 2 C 0.17 2.64 8.20 -156.57 -1.28 1.35 16 3 N -0.39 -6.97 12.15 31.22 0.38 -6.59 16 4 O 0.07 1.30 8.45 16.54 0.14 1.44 16 5 C 0.27 4.71 7.96 -13.91 -0.11 4.60 16 6 C -0.17 -2.88 5.91 -104.65 -0.62 -3.50 16 7 C 0.02 0.31 9.83 -38.90 -0.38 -0.08 16 8 C -0.26 -3.06 10.09 -39.49 -0.40 -3.46 16 9 C 0.18 2.48 11.16 -17.50 -0.20 2.28 16 10 N -0.51 -9.04 8.92 -12.14 -0.11 -9.15 16 11 C 0.49 9.10 5.92 -154.89 -0.92 8.18 16 12 N -0.62 -12.55 3.25 -9.53 -0.03 -12.58 16 13 C 0.38 8.13 5.47 -83.52 -0.46 7.67 16 14 C -0.35 -7.21 7.48 -38.33 -0.29 -7.50 16 15 H 0.11 2.35 7.29 -52.49 -0.38 1.97 16 16 C 0.07 1.38 5.30 -17.20 -0.09 1.29 16 17 N -0.74 -14.16 10.87 55.60 0.60 -13.55 16 18 Si 0.93 14.94 29.57 -169.99 -5.03 9.91 16 19 H -0.25 -4.07 7.11 56.52 0.40 -3.66 16 20 H -0.26 -4.25 7.11 56.52 0.40 -3.85 16 21 H -0.26 -4.16 7.11 56.52 0.40 -3.75 16 22 C -0.30 -6.81 5.88 -104.94 -0.62 -7.43 16 23 C 0.33 7.57 14.05 -22.46 -0.32 7.25 16 24 N -0.53 -12.65 18.54 41.85 0.78 -11.87 16 25 C 0.31 7.14 14.82 -22.53 -0.33 6.81 16 26 N -0.53 -12.84 18.53 41.77 0.77 -12.06 16 27 N -0.50 -8.22 11.33 -10.18 -0.12 -8.34 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.67 7.96 -52.48 -0.42 1.25 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.41 8.40 5.54 -40.82 -0.23 8.17 16 35 H 0.30 5.29 8.29 -40.82 -0.34 4.96 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -27.03 335.13 -5.46 -32.49 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -2.27 Total: 8.00 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: -5.63 Total: 17.25 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: 2.28 Total: -74.14 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.14 Total: 1.44 kcal Atomic # 14 Polarization: 14.94 SS G_CDS: -5.03 Total: 9.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.03 -5.46 -32.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.975 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds