Wall clock time and date at job start Tue Mar 31 2020 12:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30041 * 126.17890 * 2 1 4 4 O 1.21285 * 110.51201 * 179.68754 * 3 2 1 5 5 C 1.34243 * 109.68655 * 0.43758 * 4 3 2 6 6 C 1.47539 * 126.68746 * 179.84217 * 5 4 3 7 7 C 1.39897 * 120.60048 * 179.66426 * 6 5 4 8 8 C 1.38406 * 118.36526 * 180.02562 * 7 6 5 9 9 C 1.38326 * 119.49018 * 359.97438 * 8 7 6 10 10 N 1.31887 * 121.19844 * 359.72332 * 9 8 7 11 11 C 1.32359 * 121.77618 * 0.56500 * 10 9 8 12 12 N 1.38658 * 119.81280 * 179.71052 * 11 10 9 13 13 C 1.38420 * 120.00091 * 354.40679 * 12 11 10 14 14 C 1.38953 * 120.00102 * 301.63462 * 13 12 11 15 15 H 1.08002 * 119.99761 * 152.00318 * 14 13 12 16 16 C 1.40861 * 119.99955 * 332.00171 * 14 13 12 17 17 N 1.30329 * 119.99675 * 2.89427 * 16 14 13 18 18 Si 1.86789 * 120.00064 * 182.88790 * 16 14 13 19 19 H 1.48508 * 109.47459 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47062 * 120.00173 * 18 16 14 21 21 H 1.48503 * 109.47688 * 240.00279 * 18 16 14 22 22 C 1.41139 * 119.99754 * 121.63416 * 13 12 11 23 23 C 1.43206 * 119.99656 * 174.78377 * 22 13 12 24 24 N 9.13886 * 157.60209 * 350.13327 * 2 1 3 25 25 C 1.43199 * 120.00193 * 354.50148 * 22 13 12 26 26 N 6.22740 * 141.54940 * 308.31855 * 2 1 3 27 27 N 1.32240 * 106.62089 * 359.57084 * 5 4 3 28 28 H 1.08997 * 109.47348 * 270.04267 * 1 2 3 29 29 H 1.09005 * 109.46983 * 30.04484 * 1 2 3 30 30 H 1.08997 * 109.47016 * 150.03625 * 1 2 3 31 31 H 1.08005 * 120.81641 * 359.97438 * 7 6 5 32 32 H 1.08006 * 120.25459 * 179.97438 * 8 7 6 33 33 H 1.07999 * 119.40465 * 180.02562 * 9 8 7 34 34 H 0.96999 * 119.99777 * 174.40318 * 12 11 10 35 35 H 0.97004 * 119.99423 * 185.00207 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4425 0.7222 0.0062 5 6 3.5366 -0.6170 0.0013 6 6 4.7787 -1.4133 0.0027 7 6 4.7282 -2.8114 0.0041 8 6 5.9216 -3.5124 0.0060 9 6 7.1186 -2.8191 0.0060 10 7 7.1444 -1.5005 -0.0013 11 6 6.0331 -0.7816 0.0022 12 7 6.1077 0.6029 0.0004 13 6 7.3367 1.2300 0.1117 14 6 8.1422 0.9886 1.2179 15 1 9.2155 1.0749 1.1335 16 6 7.5590 0.6313 2.4493 17 7 6.2684 0.4721 2.5372 18 14 8.6352 0.3856 3.9561 19 1 10.0555 0.6248 3.5944 20 1 8.2273 1.3416 5.0169 21 1 8.4784 -1.0042 4.4553 22 6 7.7716 2.1145 -0.8985 23 6 8.9900 2.8484 -0.7316 24 7 9.9565 3.4307 -0.5967 25 6 6.9978 2.2737 -2.0928 26 7 6.3840 2.4010 -3.0382 27 7 2.2992 -1.0832 0.0008 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3633 -0.8903 -0.5133 31 1 3.7813 -3.3309 0.0045 32 1 5.9183 -4.5924 0.0075 33 1 8.0490 -3.3675 0.0070 34 1 5.2986 1.1321 -0.0790 35 1 5.8589 0.2977 3.3991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:10 Heat of formation + Delta-G solvation = 155.981091 kcal Electronic energy + Delta-G solvation = -26212.317365 eV Core-core repulsion = 22406.507763 eV Total energy + Delta-G solvation = -3805.809602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.49328 -41.30693 -38.82912 -37.17153 -36.94352 -36.56705 -35.36521 -34.82511 -32.93699 -32.32712 -30.11126 -29.96509 -28.77535 -25.98007 -24.71078 -23.98465 -22.70682 -22.48990 -20.70667 -19.14987 -19.05676 -18.78936 -18.71804 -17.82196 -17.33672 -17.05854 -16.15825 -15.59720 -15.24697 -14.98317 -14.84392 -14.61468 -14.46875 -14.37943 -14.21633 -13.90145 -13.75497 -13.48326 -13.44572 -13.34187 -13.23830 -13.07885 -13.02665 -12.72895 -12.71150 -12.61744 -12.07439 -12.06749 -11.58545 -11.53728 -11.48489 -10.38210 -10.30655 -9.75114 -9.20824 -8.47290 -7.11484 -0.54253 0.35028 0.67033 0.88031 1.36225 1.37842 1.52602 1.55841 1.63598 2.02134 2.09013 2.19381 2.21749 2.54721 2.58766 2.70361 3.06286 3.09633 3.39937 3.66873 3.81903 3.86404 4.10583 4.22601 4.36056 4.51724 4.58566 4.60427 4.66024 4.70572 4.78538 4.89060 5.06785 5.13637 5.31960 5.42017 5.56234 5.83717 6.00020 6.19675 6.45453 6.68202 7.08953 7.14275 7.30357 7.39771 7.74440 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.005760 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.961890 B = 4859.629179 C = 5697.777400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.173 3.827 3 N -0.417 5.417 4 O 0.040 5.960 5 C 0.258 3.742 6 C -0.187 4.187 7 C 0.020 3.980 8 C -0.230 4.230 9 C 0.176 3.824 10 N -0.542 5.542 11 C 0.467 3.533 12 N -0.632 5.632 13 C 0.376 3.624 14 C -0.345 4.345 15 H 0.107 0.893 16 C 0.048 3.952 17 N -0.740 5.740 18 Si 0.987 3.013 19 H -0.254 1.254 20 H -0.262 1.262 21 H -0.252 1.252 22 C -0.324 4.324 23 C 0.333 3.667 24 N -0.552 5.552 25 C 0.314 3.686 26 N -0.558 5.558 27 N -0.499 5.499 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.159 0.841 32 H 0.181 0.819 33 H 0.194 0.806 34 H 0.403 0.597 35 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 -14.061 6.409 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 N -0.135 5.135 4 O -0.008 6.008 5 C 0.043 3.957 6 C -0.198 4.198 7 C -0.007 4.007 8 C -0.252 4.252 9 C 0.014 3.986 10 N -0.258 5.258 11 C 0.230 3.770 12 N -0.257 5.257 13 C 0.271 3.729 14 C -0.373 4.373 15 H 0.125 0.875 16 C -0.181 4.181 17 N -0.359 5.359 18 Si 0.806 3.194 19 H -0.177 1.177 20 H -0.186 1.186 21 H -0.176 1.176 22 C -0.344 4.344 23 C 0.026 3.974 24 N -0.235 5.235 25 C 0.008 3.992 26 N -0.242 5.242 27 N -0.235 5.235 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.177 0.823 32 H 0.198 0.802 33 H 0.211 0.789 34 H 0.243 0.757 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.750 -12.013 5.265 15.234 hybrid contribution -0.797 0.043 0.742 1.090 sum -8.547 -11.970 6.006 15.888 Atomic orbital electron populations 1.20381 0.79622 1.05905 1.05735 1.26689 1.02229 0.82996 0.98094 1.74604 0.89114 1.25079 1.24729 1.85179 1.22948 1.25050 1.67639 1.26386 0.94919 0.81146 0.93284 1.17661 0.85130 0.93846 1.23120 1.21606 1.01148 0.89242 0.88694 1.22152 0.91093 1.03106 1.08842 1.23491 1.00319 0.87853 0.86961 1.67511 1.28182 1.09580 1.20532 1.18103 0.88241 0.84460 0.86199 1.41830 1.08288 1.02650 1.72900 1.16785 0.81814 0.85652 0.88606 1.20349 0.96836 1.28045 0.92029 0.87483 1.27167 0.96690 0.90205 1.04011 1.69534 1.12556 1.23453 1.30373 0.85008 0.79282 0.79794 0.75343 1.17697 1.18627 1.17583 1.13017 1.00308 1.23533 0.97502 1.24725 0.90991 0.90395 0.91277 1.81048 1.14598 1.16622 1.11268 1.25343 0.91691 0.90668 0.91501 1.80966 1.13737 1.15732 1.13753 1.72095 0.98482 1.28924 1.23983 0.87539 0.88543 0.87323 0.82326 0.80194 0.78893 0.75654 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.51 71.24 0.75 -0.33 16 2 C 0.17 5.30 8.20 138.53 1.14 6.43 16 3 N -0.42 -15.31 12.15 -58.48 -0.71 -16.02 16 4 O 0.04 1.58 8.45 69.25 0.58 2.17 16 5 C 0.26 9.20 7.96 87.20 0.69 9.89 16 6 C -0.19 -6.24 5.91 -19.88 -0.12 -6.35 16 7 C 0.02 0.51 9.83 22.71 0.22 0.73 16 8 C -0.23 -4.55 10.09 22.33 0.23 -4.32 16 9 C 0.18 4.23 11.16 84.71 0.95 5.17 16 10 N -0.54 -18.63 8.92 -192.33 -1.72 -20.35 16 11 C 0.47 17.41 5.92 133.52 0.79 18.20 16 12 N -0.63 -26.26 3.25 -184.07 -0.60 -26.86 16 13 C 0.38 16.41 5.47 38.99 0.21 16.62 16 14 C -0.35 -14.28 7.48 23.08 0.17 -14.10 16 15 H 0.11 4.50 7.29 -2.91 -0.02 4.47 16 16 C 0.05 1.79 5.30 85.56 0.45 2.24 16 17 N -0.74 -27.99 10.87 21.98 0.24 -27.75 16 18 Si 0.99 29.20 29.57 68.60 2.03 31.23 16 19 H -0.25 -7.78 7.11 99.48 0.71 -7.07 16 20 H -0.26 -7.66 7.11 99.48 0.71 -6.95 16 21 H -0.25 -6.98 7.11 99.48 0.71 -6.28 16 22 C -0.32 -15.06 5.88 -20.07 -0.12 -15.18 16 23 C 0.33 15.81 14.05 88.33 1.24 17.05 16 24 N -0.55 -26.85 18.54 19.01 0.35 -26.49 16 25 C 0.31 15.21 14.82 88.35 1.31 16.52 16 26 N -0.56 -28.03 18.53 18.98 0.35 -27.68 16 27 N -0.50 -16.14 11.33 -302.67 -3.43 -19.57 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.16 3.30 7.96 -2.91 -0.02 3.28 16 32 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.40 17.36 5.54 -92.71 -0.51 16.85 16 35 H 0.31 10.55 8.29 -92.71 -0.77 9.78 16 Total: -1.00 -60.70 335.13 5.71 -54.99 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.69 Total: 23.77 kcal Atomic # 6 Polarization: 44.65 SS G_CDS: 7.92 Total: 52.56 kcal Atomic # 7 Polarization: -159.21 SS G_CDS: -5.51 Total: -164.72 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.58 Total: 2.17 kcal Atomic # 14 Polarization: 29.20 SS G_CDS: 2.03 Total: 31.23 kcal Total: -60.70 5.71 -54.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.972 kcal (2) G-P(sol) polarization free energy of solvation -60.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds