Wall clock time and date at job start Tue Mar 31 2020 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.36793 * 120.00195 * 90.00284 * 5 4 3 7 7 H 1.08006 * 119.99595 * 359.97438 * 6 5 4 8 8 C 1.38851 * 120.00135 * 179.97438 * 6 5 4 9 9 N 1.31524 * 120.00225 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47206 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47196 * 119.99965 * 10 8 6 13 13 H 1.48500 * 109.47075 * 239.99775 * 10 8 6 14 14 C 1.38413 * 120.00219 * 270.00182 * 5 4 3 15 15 C 1.38722 * 121.05706 * 89.99832 * 14 5 4 16 16 C 1.38966 * 119.65405 * 179.97438 * 15 14 5 17 17 Cl 1.73594 * 119.08669 * 180.02562 * 16 15 14 18 18 N 1.31398 * 121.82641 * 0.02562 * 16 15 14 19 19 C 1.33777 * 121.70052 * 359.97438 * 18 16 15 20 20 C 1.40771 * 120.96694 * 179.97438 * 19 18 16 21 21 F 1.35101 * 120.14661 * 0.03437 * 20 19 18 22 22 C 1.36350 * 119.71407 * 180.02562 * 20 19 18 23 23 C 1.39222 * 120.99456 * 359.97438 * 22 20 19 24 24 C 1.36310 * 120.83770 * 0.02562 * 23 22 20 25 25 C 1.40123 * 119.68948 * 359.74885 * 24 23 22 26 26 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 27 27 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 28 28 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 30 30 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 31 31 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 32 32 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 34 34 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 35 35 H 0.97001 * 120.00383 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.17713 * 0.02562 * 15 14 5 37 37 H 1.07997 * 119.50842 * 179.97438 * 22 20 19 38 38 H 1.08007 * 119.58078 * 180.02562 * 23 22 20 39 39 H 1.08000 * 120.15588 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2869 3.4678 1.1849 7 1 4.1069 2.9582 2.1200 8 6 4.7502 4.7768 1.1855 9 7 4.9698 5.3972 0.0467 10 14 5.0629 5.6561 2.8036 11 1 4.7411 4.7459 3.9319 12 1 6.4909 6.0563 2.8816 13 1 4.2049 6.8655 2.8836 14 6 4.2885 3.4769 -1.1984 15 6 3.2870 4.2107 -1.8173 16 6 3.5503 4.8555 -3.0198 17 17 2.2865 5.7703 -3.7812 18 7 4.7292 4.7919 -3.5966 19 6 5.7401 4.1026 -3.0558 20 6 6.9968 4.0444 -3.6874 21 9 7.1990 4.6901 -4.8568 22 6 8.0093 3.3338 -3.1137 23 6 7.8208 2.6624 -1.9087 24 6 6.6170 2.6975 -1.2701 25 6 5.5559 3.4222 -1.8289 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9284 0.8891 34 1 3.9330 0.9287 -0.8909 35 1 5.2931 6.3117 0.0471 36 1 2.3081 4.2813 -1.3665 37 1 8.9719 3.2911 -3.6013 38 1 8.6388 2.1066 -1.4744 39 1 6.4831 2.1730 -0.3356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:19 Heat of formation + Delta-G solvation = 11.429978 kcal Electronic energy + Delta-G solvation = -25316.124269 eV Core-core repulsion = 21585.233993 eV Total energy + Delta-G solvation = -3730.890277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.20883 -39.97013 -37.02058 -36.58968 -35.43315 -34.50669 -31.78225 -31.00569 -29.72772 -28.88857 -27.94535 -24.81888 -23.57880 -23.03261 -22.14880 -20.82658 -20.27485 -18.37571 -17.51127 -16.83271 -16.03417 -15.32801 -15.08523 -15.06039 -14.94549 -14.52696 -14.14773 -13.84318 -13.65802 -13.61181 -13.29217 -13.05534 -12.50858 -12.23559 -12.09776 -11.66653 -11.57849 -11.42345 -11.28225 -11.03825 -10.88231 -10.76074 -10.68292 -10.61703 -10.48970 -10.38149 -10.22038 -10.06236 -9.25589 -9.13490 -8.85694 -7.93851 -7.52182 -7.33502 -5.96064 -3.63694 1.13237 1.55529 2.50064 2.77049 3.20537 3.25940 3.30168 3.55290 4.14303 4.63164 4.77426 4.86813 5.10072 5.11674 5.22341 5.30317 5.40613 5.47494 5.69406 5.74195 5.75168 5.85094 5.99193 6.02513 6.09158 6.11651 6.13095 6.26347 6.28783 6.38118 6.52616 6.62792 6.65638 6.79763 6.82982 6.89545 7.10240 7.38006 7.40299 7.50863 7.87410 8.53147 8.86611 9.36599 9.74219 10.90107 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.008575 B = 0.006136 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.460884 B = 4561.960112 C = 5272.070355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.152 3.848 5 N -0.569 5.569 6 C -0.263 4.263 7 H 0.092 0.908 8 C 0.000 4.000 9 N -0.895 5.895 10 Si 0.923 3.077 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.287 1.287 14 C 0.394 3.606 15 C -0.183 4.183 16 C 0.236 3.764 17 Cl -0.067 7.067 18 N -0.511 5.511 19 C 0.130 3.870 20 C 0.101 3.899 21 F -0.137 7.137 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.058 4.058 25 C -0.070 4.070 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.267 0.733 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -8.093 -1.808 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.027 3.973 5 N -0.285 5.285 6 C -0.389 4.389 7 H 0.110 0.890 8 C -0.198 4.198 9 N -0.539 5.539 10 Si 0.752 3.248 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.214 1.214 14 C 0.288 3.712 15 C -0.208 4.208 16 C 0.060 3.940 17 Cl -0.038 7.038 18 N -0.224 5.224 19 C 0.006 3.994 20 C 0.080 3.920 21 F -0.115 7.115 22 C -0.165 4.165 23 C -0.154 4.154 24 C -0.077 4.077 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.305 -7.385 -2.629 7.947 hybrid contribution -0.044 0.857 1.355 1.604 sum -1.348 -6.528 -1.275 6.786 Atomic orbital electron populations 1.21756 0.96415 1.00824 1.01755 1.21479 0.95436 0.97690 1.01401 1.22218 0.98116 0.95340 1.02443 1.20964 0.92272 0.83825 1.00240 1.41410 1.75542 1.10604 1.00942 1.19473 1.39789 0.95585 0.84082 0.89022 1.24934 1.00025 0.97081 0.97785 1.69309 1.48878 1.12726 1.22942 0.85878 0.77767 0.79477 0.81694 1.20151 1.21359 1.21358 1.16749 0.88003 0.83397 0.83053 1.21930 1.01882 1.02154 0.94850 1.21342 0.88571 0.93381 0.90681 1.98334 1.49056 1.73664 1.82795 1.66990 0.99245 1.20693 1.35487 1.18170 0.91461 0.96953 0.92774 1.17054 0.93024 0.97944 0.83935 1.91439 1.95280 1.79676 1.45130 1.20589 0.98114 1.00108 0.97680 1.20468 0.97858 1.01789 0.95295 1.20938 0.91751 0.96339 0.98643 1.19128 0.96375 0.98167 0.93903 0.92904 0.92920 0.93389 0.92502 0.92345 0.91599 0.92438 0.92046 0.93610 0.92017 0.85632 0.85465 0.85948 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.48 5.93 -26.73 -0.16 -1.64 16 3 C -0.14 -2.14 5.54 -26.73 -0.15 -2.29 16 4 C 0.15 2.54 5.65 -4.04 -0.02 2.52 16 5 N -0.57 -11.87 1.77 -112.71 -0.20 -12.07 16 6 C -0.26 -6.04 9.79 -15.11 -0.15 -6.18 16 7 H 0.09 2.04 7.83 -52.48 -0.41 1.62 16 8 C 0.00 0.01 5.44 -17.46 -0.10 -0.09 16 9 N -0.90 -23.17 9.31 55.49 0.52 -22.65 16 10 Si 0.92 20.08 29.55 -169.99 -5.02 15.05 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.39 8.66 2.88 -83.41 -0.24 8.42 16 15 C -0.18 -4.02 8.86 -39.13 -0.35 -4.36 16 16 C 0.24 5.16 7.26 -17.47 -0.13 5.04 16 17 Cl -0.07 -1.25 29.08 -51.86 -1.51 -2.76 16 18 N -0.51 -11.77 10.16 -8.17 -0.08 -11.85 16 19 C 0.13 2.91 6.61 -84.82 -0.56 2.35 16 20 C 0.10 2.04 7.31 -39.31 -0.29 1.75 16 21 F -0.14 -2.78 17.12 2.25 0.04 -2.74 16 22 C -0.14 -2.46 9.92 -39.90 -0.40 -2.85 16 23 C -0.14 -2.26 9.96 -39.91 -0.40 -2.66 16 24 C -0.06 -1.11 9.56 -39.57 -0.38 -1.49 16 25 C -0.07 -1.53 4.84 -106.64 -0.52 -2.05 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 37 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 39 H 0.13 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -26.47 348.75 -9.46 -35.93 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.01 Total: 0.66 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.45 Total: -4.82 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.23 Total: -46.57 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.51 Total: -2.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.47 -9.46 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.359 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds