Wall clock time and date at job start Tue Mar 31 2020 13:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.36793 * 120.00195 * 90.00284 * 5 4 3 7 7 H 1.08006 * 119.99595 * 359.97438 * 6 5 4 8 8 C 1.38851 * 120.00135 * 179.97438 * 6 5 4 9 9 N 1.31524 * 120.00225 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47206 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47196 * 119.99965 * 10 8 6 13 13 H 1.48500 * 109.47075 * 239.99775 * 10 8 6 14 14 C 1.38413 * 120.00219 * 270.00182 * 5 4 3 15 15 C 1.38722 * 121.05706 * 89.99832 * 14 5 4 16 16 C 1.38966 * 119.65405 * 179.97438 * 15 14 5 17 17 Cl 1.73594 * 119.08669 * 180.02562 * 16 15 14 18 18 N 1.31398 * 121.82641 * 0.02562 * 16 15 14 19 19 C 1.33777 * 121.70052 * 359.97438 * 18 16 15 20 20 C 1.40771 * 120.96694 * 179.97438 * 19 18 16 21 21 F 1.35101 * 120.14661 * 0.03437 * 20 19 18 22 22 C 1.36350 * 119.71407 * 180.02562 * 20 19 18 23 23 C 1.39222 * 120.99456 * 359.97438 * 22 20 19 24 24 C 1.36310 * 120.83770 * 0.02562 * 23 22 20 25 25 C 1.40123 * 119.68948 * 359.74885 * 24 23 22 26 26 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 27 27 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 28 28 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 30 30 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 31 31 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 32 32 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 34 34 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 35 35 H 0.97001 * 120.00383 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.17713 * 0.02562 * 15 14 5 37 37 H 1.07997 * 119.50842 * 179.97438 * 22 20 19 38 38 H 1.08007 * 119.58078 * 180.02562 * 23 22 20 39 39 H 1.08000 * 120.15588 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2869 3.4678 1.1849 7 1 4.1069 2.9582 2.1200 8 6 4.7502 4.7768 1.1855 9 7 4.9698 5.3972 0.0467 10 14 5.0629 5.6561 2.8036 11 1 4.7411 4.7459 3.9319 12 1 6.4909 6.0563 2.8816 13 1 4.2049 6.8655 2.8836 14 6 4.2885 3.4769 -1.1984 15 6 3.2870 4.2107 -1.8173 16 6 3.5503 4.8555 -3.0198 17 17 2.2865 5.7703 -3.7812 18 7 4.7292 4.7919 -3.5966 19 6 5.7401 4.1026 -3.0558 20 6 6.9968 4.0444 -3.6874 21 9 7.1990 4.6901 -4.8568 22 6 8.0093 3.3338 -3.1137 23 6 7.8208 2.6624 -1.9087 24 6 6.6170 2.6975 -1.2701 25 6 5.5559 3.4222 -1.8289 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9284 0.8891 34 1 3.9330 0.9287 -0.8909 35 1 5.2931 6.3117 0.0471 36 1 2.3081 4.2813 -1.3665 37 1 8.9719 3.2911 -3.6013 38 1 8.6388 2.1066 -1.4744 39 1 6.4831 2.1730 -0.3356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:18 Heat of formation + Delta-G solvation = 1.063987 kcal Electronic energy + Delta-G solvation = -25316.573772 eV Core-core repulsion = 21585.233993 eV Total energy + Delta-G solvation = -3731.339780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.74216 -41.54467 -38.52970 -38.14026 -36.96946 -35.75519 -33.50971 -32.47787 -31.26914 -30.37550 -29.33009 -26.49984 -24.99200 -24.57784 -23.55162 -22.14183 -21.68373 -20.00580 -19.04206 -18.39487 -17.61665 -16.99421 -16.61477 -16.54696 -16.31313 -16.05498 -15.59402 -15.48577 -15.14579 -14.92210 -14.81756 -14.42744 -13.80257 -13.67678 -13.36570 -13.16927 -13.09299 -12.90844 -12.87680 -12.53266 -12.31315 -12.18633 -12.10381 -11.99644 -11.89477 -11.88236 -11.69406 -11.31082 -10.98856 -10.74690 -10.51145 -9.50004 -9.21383 -8.91265 -7.75725 -5.44638 -0.41657 0.01153 0.88942 1.16474 1.46050 1.49915 1.57320 2.04671 2.42430 3.04879 3.22632 3.28253 3.36134 3.66246 4.03640 4.13353 4.17765 4.24343 4.25805 4.40947 4.44883 4.53625 4.54460 4.69712 4.82349 4.93324 5.03670 5.04388 5.08293 5.17378 5.19588 5.28492 5.37184 5.42747 5.48664 5.54290 5.56724 5.63796 5.82493 6.01343 6.09166 6.89474 7.05727 7.69080 7.98795 9.04417 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.008575 B = 0.006136 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.460884 B = 4561.960112 C = 5272.070355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.148 3.852 5 N -0.576 5.576 6 C -0.250 4.250 7 H 0.101 0.899 8 C -0.047 4.047 9 N -0.918 5.918 10 Si 0.972 3.028 11 H -0.261 1.261 12 H -0.298 1.298 13 H -0.303 1.303 14 C 0.388 3.612 15 C -0.195 4.195 16 C 0.225 3.775 17 Cl -0.049 7.049 18 N -0.532 5.532 19 C 0.104 3.896 20 C 0.073 3.927 21 F -0.143 7.143 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.073 4.073 25 C -0.086 4.086 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.250 0.750 36 H 0.119 0.881 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -10.148 -1.152 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.172 4.172 4 C 0.025 3.975 5 N -0.293 5.293 6 C -0.377 4.377 7 H 0.119 0.881 8 C -0.242 4.242 9 N -0.563 5.563 10 Si 0.802 3.198 11 H -0.185 1.185 12 H -0.225 1.225 13 H -0.231 1.231 14 C 0.282 3.718 15 C -0.220 4.220 16 C 0.049 3.951 17 Cl -0.020 7.020 18 N -0.246 5.246 19 C -0.019 4.019 20 C 0.052 3.948 21 F -0.122 7.122 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.092 4.092 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.132 -9.490 -1.968 9.692 hybrid contribution -0.380 1.412 1.123 1.843 sum -0.512 -8.078 -0.845 8.138 Atomic orbital electron populations 1.21747 0.95559 1.01949 1.01417 1.21434 0.96156 0.95404 1.02368 1.22081 0.96920 0.97275 1.00876 1.21181 0.93132 0.81976 1.01221 1.41594 1.75749 1.11827 1.00119 1.19736 1.37545 0.95287 0.85120 0.88115 1.25477 1.01220 0.98037 0.99448 1.69539 1.50713 1.11882 1.24173 0.85089 0.76387 0.78218 0.80115 1.18473 1.22549 1.23085 1.16920 0.88224 0.83291 0.83361 1.21915 1.01845 1.02948 0.95337 1.21505 0.88923 0.93754 0.90961 1.98321 1.48101 1.73166 1.82447 1.67028 0.99818 1.21555 1.36208 1.18591 0.92247 0.97498 0.93560 1.17377 0.93371 0.99590 0.84423 1.91416 1.95250 1.80043 1.45449 1.21069 0.98654 0.97354 0.97121 1.20959 0.97854 1.00248 0.94325 1.21082 0.92356 0.96685 0.99073 1.19295 0.96948 0.98829 0.94029 0.93124 0.93458 0.91514 0.91735 0.91115 0.93059 0.94110 0.90673 0.92820 0.93845 0.86278 0.81442 0.81458 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.58 5.93 30.59 0.18 -2.40 16 3 C -0.13 -3.91 5.54 30.60 0.17 -3.74 16 4 C 0.15 4.80 5.65 86.38 0.49 5.29 16 5 N -0.58 -23.89 1.77 -510.50 -0.90 -24.79 16 6 C -0.25 -11.31 9.79 84.07 0.82 -10.49 16 7 H 0.10 4.32 7.83 -2.91 -0.02 4.29 16 8 C -0.05 -2.28 5.44 84.89 0.46 -1.81 16 9 N -0.92 -48.46 9.31 21.65 0.20 -48.25 16 10 Si 0.97 41.44 29.55 68.60 2.03 43.46 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 12 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 14 C 0.39 17.26 2.88 39.06 0.11 17.37 16 15 C -0.20 -8.85 8.86 22.56 0.20 -8.65 16 16 C 0.22 10.11 7.26 84.93 0.62 10.73 16 17 Cl -0.05 -1.87 29.08 -2.72 -0.08 -1.95 16 18 N -0.53 -25.12 10.16 -179.76 -1.83 -26.94 16 19 C 0.10 4.69 6.61 40.27 0.27 4.95 16 20 C 0.07 2.87 7.31 22.45 0.16 3.04 16 21 F -0.14 -5.74 17.12 44.97 0.77 -4.97 16 22 C -0.12 -3.75 9.92 22.07 0.22 -3.53 16 23 C -0.12 -3.44 9.96 22.06 0.22 -3.22 16 24 C -0.07 -2.69 9.56 22.28 0.21 -2.48 16 25 C -0.09 -3.73 4.84 -21.17 -0.10 -3.83 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 34 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 35 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 36 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 37 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.13 4.84 7.60 -2.91 -0.02 4.82 16 Total: -1.00 -58.16 348.75 6.00 -52.16 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.06 Total: 12.38 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 4.75 Total: -1.09 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -2.53 Total: -99.99 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.77 Total: -4.97 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -58.16 6.00 -52.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.225 kcal (2) G-P(sol) polarization free energy of solvation -58.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds