Wall clock time and date at job start Tue Mar 31 2020 13:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35784 * 116.99739 * 2 1 4 4 C 1.38553 * 120.14194 * 359.97438 * 3 2 1 5 5 C 1.38198 * 120.09017 * 180.02562 * 4 3 2 6 6 C 1.38519 * 120.37514 * 0.02562 * 5 4 3 7 7 C 1.37858 * 120.27745 * 359.69200 * 6 5 4 8 8 C 1.39663 * 119.90641 * 0.58195 * 7 6 5 9 9 C 1.47737 * 120.18391 * 179.72321 * 8 7 6 10 10 C 1.39248 * 120.34344 * 64.72355 * 9 8 7 11 11 C 1.38022 * 119.97867 * 179.97438 * 10 9 8 12 12 C 1.38964 * 120.68578 * 0.25325 * 11 10 9 13 13 C 1.50701 * 119.65154 * 179.72213 * 12 11 10 14 14 F 1.39906 * 109.46910 * 359.97438 * 13 12 11 15 15 F 1.39899 * 109.47169 * 120.00033 * 13 12 11 16 16 F 1.39905 * 109.46976 * 240.00131 * 13 12 11 17 17 C 1.36414 * 120.69749 * 359.48226 * 12 11 10 18 18 C 1.40754 * 119.98888 * 0.51384 * 17 12 11 19 19 C 1.40849 * 120.33101 * 179.72283 * 18 17 12 20 20 H 1.08006 * 119.99835 * 205.30676 * 19 18 17 21 21 C 1.40053 * 120.00043 * 25.31185 * 19 18 17 22 22 N 1.30788 * 119.99788 * 15.47878 * 21 19 18 23 23 Si 1.86799 * 119.99641 * 195.48108 * 21 19 18 24 24 H 1.48504 * 109.47118 * 90.00154 * 23 21 19 25 25 H 1.48506 * 109.46958 * 210.00003 * 23 21 19 26 26 H 1.48496 * 109.47455 * 329.99834 * 23 21 19 27 27 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47466 * 300.00428 * 1 2 3 29 29 H 1.09000 * 109.46832 * 60.00044 * 1 2 3 30 30 H 1.08000 * 119.95695 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.81561 * 179.97438 * 5 4 3 32 32 H 1.07996 * 119.85953 * 179.97438 * 6 5 4 33 33 H 1.08006 * 120.04974 * 180.30412 * 7 6 5 34 34 H 1.08007 * 120.00881 * 359.97438 * 10 9 8 35 35 H 1.08009 * 119.65856 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.00340 * 180.28038 * 17 12 11 37 37 H 0.97004 * 119.99818 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2936 2.3737 -0.0005 5 6 1.9221 3.6045 -0.0011 6 6 3.3049 3.6849 -0.0016 7 6 4.0679 2.5367 0.0048 8 6 3.4450 1.2867 -0.0005 9 6 4.2567 0.0523 0.0002 10 6 5.0675 -0.2559 1.0895 11 6 5.8223 -1.4114 1.0823 12 6 5.7878 -2.2743 -0.0064 13 6 6.6263 -3.5265 0.0078 14 9 7.3416 -3.5951 1.2082 15 9 5.7947 -4.6458 -0.1047 16 9 7.5214 -3.5005 -1.0671 17 6 4.9993 -2.0023 -1.0858 18 6 4.2178 -0.8320 -1.1091 19 6 3.4055 -0.5411 -2.2225 20 1 3.1383 0.4817 -2.4435 21 6 2.9443 -1.5783 -3.0428 22 7 3.0017 -2.8166 -2.6259 23 14 2.2472 -1.1929 -4.7325 24 1 3.3407 -1.2190 -5.7369 25 1 1.2234 -2.2080 -5.0888 26 1 1.6231 0.1544 -4.7150 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2150 2.3190 -0.0005 31 1 1.3317 4.5089 -0.0019 32 1 3.7874 4.6511 -0.0024 33 1 5.1459 2.6037 0.0093 34 1 5.1057 0.4091 1.9397 35 1 6.4497 -1.6452 1.9298 36 1 4.9777 -2.6831 -1.9240 37 1 2.6819 -3.5350 -3.1939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239541884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:01 Heat of formation + Delta-G solvation = -148.475651 kcal Electronic energy + Delta-G solvation = -27303.934026 eV Core-core repulsion = 22982.020290 eV Total energy + Delta-G solvation = -4321.913736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.34675 -46.89192 -46.79034 -39.58961 -37.71801 -36.59771 -33.90685 -32.24458 -29.88959 -29.54391 -28.99936 -26.74837 -25.55438 -24.80827 -22.08227 -21.56112 -21.05413 -19.87414 -18.01773 -17.66913 -17.48150 -17.44269 -16.37186 -15.76919 -15.37315 -15.14779 -14.99905 -14.20692 -13.93124 -13.73771 -13.62109 -13.44021 -13.36333 -13.29433 -13.05388 -13.04400 -13.01072 -12.64384 -12.06459 -12.01464 -11.78599 -11.42240 -11.34741 -11.22982 -11.09339 -10.86048 -10.63757 -10.55210 -10.37981 -9.92026 -9.67070 -9.35728 -8.39855 -7.85081 -7.60844 -7.32409 -6.89886 -4.48004 1.77932 2.01521 2.44404 2.73441 2.99503 3.02731 3.09635 3.58472 3.82074 3.95468 4.28945 4.41573 4.77031 4.98159 5.14490 5.25817 5.35611 5.47987 5.53225 5.56760 5.60499 5.87292 5.89613 6.00439 6.14282 6.20228 6.35032 6.56011 6.82339 6.83650 6.93120 6.94824 7.03817 7.14523 7.25037 7.33902 7.59153 7.70743 7.79049 8.01667 8.13086 8.36442 8.67353 8.73664 10.01848 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.005829 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.541099 B = 4802.254095 C = 6220.343857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.278 6.278 3 C 0.148 3.852 4 C -0.220 4.220 5 C -0.101 4.101 6 C -0.165 4.165 7 C -0.086 4.086 8 C -0.019 4.019 9 C -0.155 4.155 10 C -0.067 4.067 11 C -0.216 4.216 12 C -0.156 4.156 13 C 0.503 3.497 14 F -0.191 7.191 15 F -0.184 7.184 16 F -0.189 7.189 17 C -0.108 4.108 18 C 0.131 3.869 19 C -0.424 4.424 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.780 5.780 23 Si 0.905 3.095 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.261 1.261 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 5.158 2.589 6.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.189 6.189 3 C 0.101 3.899 4 C -0.239 4.239 5 C -0.119 4.119 6 C -0.184 4.184 7 C -0.104 4.104 8 C -0.020 4.020 9 C -0.156 4.156 10 C -0.086 4.086 11 C -0.235 4.235 12 C -0.158 4.158 13 C 0.450 3.550 14 F -0.172 7.172 15 F -0.165 7.165 16 F -0.171 7.171 17 C -0.127 4.127 18 C 0.128 3.872 19 C -0.453 4.453 20 H 0.099 0.901 21 C -0.143 4.143 22 N -0.404 5.404 23 Si 0.729 3.271 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.185 1.185 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.148 0.852 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.243 4.656 2.507 5.744 hybrid contribution -0.568 -0.060 -0.778 0.965 sum -2.811 4.596 1.729 5.658 Atomic orbital electron populations 1.22945 0.80384 1.03290 1.00065 1.86361 1.19277 1.25897 1.87393 1.19240 0.91865 0.84072 0.94681 1.21075 0.99374 0.92602 1.10877 1.20749 0.94550 0.96348 1.00273 1.20812 0.93757 0.97870 1.05922 1.21124 0.99532 0.90853 0.98920 1.18115 0.89306 0.93369 1.01214 1.18474 1.03796 0.97536 0.95838 1.20477 0.95868 0.95733 0.96477 1.19946 1.07352 0.97582 0.98639 1.19372 1.02377 0.94171 0.99869 1.18822 0.78255 0.85523 0.72445 1.93074 1.79994 1.96857 1.47321 1.93166 1.71866 1.55765 1.95697 1.93138 1.70194 1.96884 1.56863 1.20881 0.95174 0.99753 0.96908 1.17333 0.89705 0.89331 0.90791 1.19440 1.24649 0.94524 1.06646 0.90110 1.25958 0.94344 0.94451 0.99581 1.69765 1.33884 1.00547 1.36168 0.86334 0.79366 0.79599 0.81752 1.19002 1.20095 1.18473 0.88853 0.93741 0.93371 0.86352 0.86966 0.86845 0.85940 0.88329 0.87911 0.85223 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.28 -5.75 9.06 -19.07 -0.17 -5.92 16 3 C 0.15 2.93 5.97 -38.74 -0.23 2.70 16 4 C -0.22 -3.65 9.03 -39.48 -0.36 -4.01 16 5 C -0.10 -1.52 10.04 -39.49 -0.40 -1.91 16 6 C -0.17 -2.54 10.03 -39.62 -0.40 -2.94 16 7 C -0.09 -1.53 9.74 -39.19 -0.38 -1.91 16 8 C -0.02 -0.40 4.39 -104.76 -0.46 -0.86 16 9 C -0.15 -3.55 4.99 -104.23 -0.52 -4.07 16 10 C -0.07 -1.45 9.73 -39.29 -0.38 -1.83 16 11 C -0.22 -4.71 9.41 -39.39 -0.37 -5.08 16 12 C -0.16 -3.61 5.34 -105.01 -0.56 -4.17 16 13 C 0.50 10.67 3.30 36.01 0.12 10.79 16 14 F -0.19 -3.76 15.93 2.25 0.04 -3.72 16 15 F -0.18 -3.97 17.22 2.25 0.04 -3.94 16 16 F -0.19 -3.93 17.23 2.25 0.04 -3.89 16 17 C -0.11 -2.69 8.12 -39.29 -0.32 -3.01 16 18 C 0.13 3.28 5.41 -106.55 -0.58 2.70 16 19 C -0.42 -10.49 7.38 -37.91 -0.28 -10.77 16 20 H 0.08 2.01 7.09 -52.48 -0.37 1.63 16 21 C 0.08 1.81 5.18 -17.32 -0.09 1.72 16 22 N -0.78 -19.09 10.87 55.55 0.60 -18.48 16 23 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 30 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 35 H 0.10 2.04 7.12 -52.48 -0.37 1.67 16 36 H 0.13 3.37 6.12 -52.49 -0.32 3.05 16 37 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -26.63 329.72 -7.17 -33.80 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.44 Total: 5.49 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -4.21 Total: -21.24 kcal Atomic # 7 Polarization: -19.09 SS G_CDS: 0.60 Total: -18.48 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.17 Total: -5.92 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 0.11 Total: -11.55 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.63 -7.17 -33.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239541884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.678 kcal (2) G-P(sol) polarization free energy of solvation -26.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds