Wall clock time and date at job start Tue Mar 31 2020 13:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35784 * 116.99739 * 2 1 4 4 C 1.38553 * 120.14194 * 359.97438 * 3 2 1 5 5 C 1.38198 * 120.09017 * 180.02562 * 4 3 2 6 6 C 1.38519 * 120.37514 * 0.02562 * 5 4 3 7 7 C 1.37858 * 120.27745 * 359.69200 * 6 5 4 8 8 C 1.39663 * 119.90641 * 0.58195 * 7 6 5 9 9 C 1.47737 * 120.18391 * 179.72321 * 8 7 6 10 10 C 1.39248 * 120.34344 * 64.72355 * 9 8 7 11 11 C 1.38022 * 119.97867 * 179.97438 * 10 9 8 12 12 C 1.38964 * 120.68578 * 0.25325 * 11 10 9 13 13 C 1.50701 * 119.65154 * 179.72213 * 12 11 10 14 14 F 1.39906 * 109.46910 * 359.97438 * 13 12 11 15 15 F 1.39899 * 109.47169 * 120.00033 * 13 12 11 16 16 F 1.39905 * 109.46976 * 240.00131 * 13 12 11 17 17 C 1.36414 * 120.69749 * 359.48226 * 12 11 10 18 18 C 1.40754 * 119.98888 * 0.51384 * 17 12 11 19 19 C 1.40849 * 120.33101 * 179.72283 * 18 17 12 20 20 H 1.08006 * 119.99835 * 205.30676 * 19 18 17 21 21 C 1.40053 * 120.00043 * 25.31185 * 19 18 17 22 22 N 1.30788 * 119.99788 * 15.47878 * 21 19 18 23 23 Si 1.86799 * 119.99641 * 195.48108 * 21 19 18 24 24 H 1.48504 * 109.47118 * 90.00154 * 23 21 19 25 25 H 1.48506 * 109.46958 * 210.00003 * 23 21 19 26 26 H 1.48496 * 109.47455 * 329.99834 * 23 21 19 27 27 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47466 * 300.00428 * 1 2 3 29 29 H 1.09000 * 109.46832 * 60.00044 * 1 2 3 30 30 H 1.08000 * 119.95695 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.81561 * 179.97438 * 5 4 3 32 32 H 1.07996 * 119.85953 * 179.97438 * 6 5 4 33 33 H 1.08006 * 120.04974 * 180.30412 * 7 6 5 34 34 H 1.08007 * 120.00881 * 359.97438 * 10 9 8 35 35 H 1.08009 * 119.65856 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.00340 * 180.28038 * 17 12 11 37 37 H 0.97004 * 119.99818 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2936 2.3737 -0.0005 5 6 1.9221 3.6045 -0.0011 6 6 3.3049 3.6849 -0.0016 7 6 4.0679 2.5367 0.0048 8 6 3.4450 1.2867 -0.0005 9 6 4.2567 0.0523 0.0002 10 6 5.0675 -0.2559 1.0895 11 6 5.8223 -1.4114 1.0823 12 6 5.7878 -2.2743 -0.0064 13 6 6.6263 -3.5265 0.0078 14 9 7.3416 -3.5951 1.2082 15 9 5.7947 -4.6458 -0.1047 16 9 7.5214 -3.5005 -1.0671 17 6 4.9993 -2.0023 -1.0858 18 6 4.2178 -0.8320 -1.1091 19 6 3.4055 -0.5411 -2.2225 20 1 3.1383 0.4817 -2.4435 21 6 2.9443 -1.5783 -3.0428 22 7 3.0017 -2.8166 -2.6259 23 14 2.2472 -1.1929 -4.7325 24 1 3.3407 -1.2190 -5.7369 25 1 1.2234 -2.2080 -5.0888 26 1 1.6231 0.1544 -4.7150 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2150 2.3190 -0.0005 31 1 1.3317 4.5089 -0.0019 32 1 3.7874 4.6511 -0.0024 33 1 5.1459 2.6037 0.0093 34 1 5.1057 0.4091 1.9397 35 1 6.4497 -1.6452 1.9298 36 1 4.9777 -2.6831 -1.9240 37 1 2.6819 -3.5350 -3.1939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239541884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:01 Heat of formation + Delta-G solvation = -159.543180 kcal Electronic energy + Delta-G solvation = -27304.413950 eV Core-core repulsion = 22982.020290 eV Total energy + Delta-G solvation = -4322.393660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.05282 -48.56582 -48.51955 -40.98306 -39.39856 -37.94712 -35.67652 -33.80789 -31.60513 -30.94079 -30.46979 -28.00350 -27.35732 -26.43655 -23.59318 -23.11570 -22.55880 -21.47227 -19.76640 -19.38468 -19.17262 -18.80093 -18.16429 -17.20614 -16.75618 -16.71501 -16.40066 -15.70444 -15.44565 -15.39882 -15.13903 -15.11155 -14.99108 -14.95997 -14.75882 -14.71673 -14.39346 -14.30206 -13.58191 -13.44478 -13.30237 -13.05592 -12.86657 -12.80100 -12.62683 -12.28139 -12.25731 -11.86635 -11.80294 -11.63274 -11.26757 -11.11240 -9.84315 -9.44355 -9.37597 -8.79458 -8.61161 -6.30827 0.33302 0.67954 0.83130 0.99089 1.35636 1.46690 1.47482 1.85293 2.17207 2.59138 2.69806 3.01783 3.02473 3.28095 3.40520 3.75740 4.04979 4.13850 4.31026 4.36339 4.44034 4.45407 4.58693 4.69078 4.70093 4.73994 4.91140 5.05120 5.15744 5.20831 5.31841 5.42124 5.57962 5.63561 5.72654 5.82041 5.91378 6.02762 6.12378 6.25645 6.52321 6.81326 6.88233 6.94605 8.29310 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.005829 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.541099 B = 4802.254095 C = 6220.343857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.222 4.222 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.092 4.092 8 C -0.062 4.062 9 C -0.148 4.148 10 C -0.077 4.077 11 C -0.212 4.212 12 C -0.168 4.168 13 C 0.510 3.490 14 F -0.179 7.179 15 F -0.188 7.188 16 F -0.187 7.187 17 C -0.136 4.136 18 C 0.104 3.896 19 C -0.442 4.442 20 H 0.071 0.929 21 C 0.041 3.959 22 N -0.813 5.813 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.259 1.259 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 7.558 3.065 8.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.240 4.240 5 C -0.109 4.109 6 C -0.179 4.179 7 C -0.110 4.110 8 C -0.062 4.062 9 C -0.150 4.150 10 C -0.095 4.095 11 C -0.232 4.232 12 C -0.169 4.169 13 C 0.457 3.543 14 F -0.160 7.160 15 F -0.169 7.169 16 F -0.169 7.169 17 C -0.155 4.155 18 C 0.101 3.899 19 C -0.470 4.470 20 H 0.089 0.911 21 C -0.176 4.176 22 N -0.438 5.438 23 Si 0.789 3.211 24 H -0.188 1.188 25 H -0.192 1.192 26 H -0.183 1.183 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.081 7.061 2.997 8.266 hybrid contribution -0.308 -0.684 -0.783 1.084 sum -3.389 6.377 2.215 7.553 Atomic orbital electron populations 1.23163 0.78221 1.04145 1.01678 1.86284 1.21833 1.27214 1.87860 1.19457 0.91902 0.84840 0.95781 1.21400 1.00579 0.92104 1.09945 1.21259 0.94812 0.97157 0.97644 1.21207 0.94095 0.98377 1.04181 1.21287 1.00171 0.90770 0.98796 1.18257 0.89995 0.93385 1.04590 1.18874 1.03051 0.97934 0.95130 1.20829 0.95506 0.96092 0.97027 1.20284 1.07037 0.97194 0.98648 1.19569 1.02441 0.95114 0.99825 1.18549 0.78130 0.84786 0.72870 1.93091 1.79623 1.96769 1.46534 1.93155 1.72141 1.55849 1.95763 1.93137 1.69999 1.96840 1.56898 1.20769 0.97038 1.00366 0.97354 1.17669 0.90207 0.90084 0.91901 1.19414 1.25718 0.94251 1.07663 0.91114 1.26650 0.94367 0.94047 1.02489 1.69829 1.35194 1.01367 1.37433 0.85406 0.78797 0.79427 0.77478 1.18765 1.19156 1.18306 0.88570 0.91255 0.92404 0.83966 0.82987 0.83385 0.85427 0.85734 0.85707 0.87178 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.32 -13.37 9.06 -91.13 -0.83 -14.19 16 3 C 0.13 4.93 5.97 22.81 0.14 5.07 16 4 C -0.22 -6.77 9.03 22.34 0.20 -6.57 16 5 C -0.09 -2.36 10.04 22.33 0.22 -2.14 16 6 C -0.16 -4.38 10.03 22.25 0.22 -4.15 16 7 C -0.09 -3.14 9.74 22.52 0.22 -2.92 16 8 C -0.06 -2.54 4.39 -19.95 -0.09 -2.63 16 9 C -0.15 -6.93 4.99 -19.61 -0.10 -7.03 16 10 C -0.08 -3.29 9.73 22.46 0.22 -3.07 16 11 C -0.21 -9.21 9.41 22.39 0.21 -9.00 16 12 C -0.17 -7.91 5.34 -20.12 -0.11 -8.02 16 13 C 0.51 21.79 3.30 71.24 0.24 22.03 16 14 F -0.18 -6.87 15.93 44.97 0.72 -6.16 16 15 F -0.19 -8.27 17.22 44.97 0.77 -7.49 16 16 F -0.19 -7.87 17.23 44.97 0.77 -7.09 16 17 C -0.14 -7.07 8.12 22.46 0.18 -6.89 16 18 C 0.10 5.41 5.41 -21.12 -0.11 5.29 16 19 C -0.44 -22.70 7.38 23.35 0.17 -22.53 16 20 H 0.07 3.65 7.09 -2.91 -0.02 3.63 16 21 C 0.04 1.99 5.18 85.29 0.44 2.43 16 22 N -0.81 -41.52 10.87 21.85 0.24 -41.28 16 23 Si 0.97 37.53 29.59 68.60 2.03 39.56 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 27 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.07 1.66 7.66 -2.39 -0.02 1.64 16 29 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 30 H 0.14 3.53 6.30 -2.91 -0.02 3.52 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.13 4.77 7.12 -2.91 -0.02 4.75 16 36 H 0.11 6.07 6.12 -2.91 -0.02 6.05 16 37 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 Total: -1.00 -59.77 329.72 8.00 -51.76 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 1.12 Total: 23.23 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 3.17 Total: -38.33 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.24 Total: -41.28 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.83 Total: -14.19 kcal Atomic # 9 Polarization: -23.01 SS G_CDS: 2.27 Total: -20.74 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -59.77 8.00 -51.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239541884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.780 kcal (2) G-P(sol) polarization free energy of solvation -59.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds