Wall clock time and date at job start Tue Mar 31 2020 13:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42905 * 109.46991 * 2 1 4 4 C 1.35864 * 116.99940 * 180.02562 * 3 2 1 5 5 C 1.38967 * 119.89744 * 359.97178 * 4 3 2 6 6 C 1.37764 * 120.16344 * 179.76825 * 5 4 3 7 7 C 1.39730 * 119.96524 * 0.51175 * 6 5 4 8 8 C 1.47806 * 120.10145 * 179.76725 * 7 6 5 9 9 C 1.40020 * 119.90176 * 64.96684 * 8 7 6 10 10 C 1.36186 * 120.13228 * 180.25858 * 9 8 7 11 11 C 1.40989 * 119.93431 * 359.49989 * 10 9 8 12 12 C 1.40985 * 120.09968 * 180.23008 * 11 10 9 13 13 H 1.07997 * 120.00347 * 204.74747 * 12 11 10 14 14 C 1.39952 * 119.99649 * 24.74463 * 12 11 10 15 15 N 1.30837 * 119.99979 * 17.99337 * 14 12 11 16 16 Si 1.86798 * 120.00046 * 197.99481 * 14 12 11 17 17 H 1.48499 * 109.47147 * 59.99626 * 16 14 12 18 18 H 1.48503 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.46888 * 299.99769 * 16 14 12 20 20 C 1.40900 * 119.80520 * 0.25475 * 11 10 9 21 21 C 1.36415 * 119.86288 * 359.97438 * 20 11 10 22 22 F 1.35105 * 119.96168 * 180.02562 * 21 20 11 23 23 C 1.39918 * 119.80271 * 359.48931 * 7 6 5 24 24 F 1.35104 * 120.08280 * 180.22978 * 23 7 6 25 25 C 1.38195 * 119.83670 * 0.25580 * 23 7 6 26 26 F 1.35101 * 119.98871 * 179.97438 * 25 23 7 27 27 H 1.08998 * 109.46764 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46924 * 300.00196 * 1 2 3 29 29 H 1.09003 * 109.47116 * 59.99846 * 1 2 3 30 30 H 1.08997 * 109.46924 * 239.99804 * 2 1 3 31 31 H 1.09000 * 109.46958 * 119.99403 * 2 1 3 32 32 H 1.08000 * 119.92356 * 0.04457 * 5 4 3 33 33 H 1.08000 * 120.02134 * 180.27798 * 6 5 4 34 34 H 1.08000 * 119.93134 * 0.02562 * 9 8 7 35 35 H 1.08001 * 120.03041 * 179.77405 * 10 9 8 36 36 H 0.96997 * 119.99895 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.06244 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3533 1.5254 -0.0005 5 6 4.1979 0.4218 -0.0005 6 6 5.5645 0.5960 -0.0058 7 6 6.1038 1.8850 -0.0006 8 6 7.5695 2.0753 -0.0011 9 6 8.3268 1.6608 -1.1035 10 6 9.6782 1.8291 -1.1067 11 6 10.3148 2.4315 -0.0023 12 6 11.7131 2.6118 -0.0041 13 1 12.2493 2.6856 0.9305 14 6 12.4063 2.6952 -1.2170 15 7 11.7596 2.9592 -2.3233 16 14 14.2549 2.4295 -1.2565 17 1 14.5700 1.0674 -0.7561 18 1 14.7457 2.5710 -2.6509 19 1 14.9187 3.4397 -0.3937 20 6 9.5496 2.8523 1.1034 21 6 8.1969 2.6755 1.1000 22 9 7.4612 3.0787 2.1590 23 6 5.2521 2.9951 -0.0006 24 9 5.7675 4.2440 -0.0002 25 6 3.8825 2.8110 -0.0006 26 9 3.0573 3.8807 -0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.7820 -0.5749 -0.0007 33 1 6.2187 -0.2633 -0.0103 34 1 7.8386 1.2033 -1.9513 35 1 10.2612 1.5054 -1.9563 36 1 12.2400 3.0167 -3.1640 37 1 10.0330 3.3138 1.9517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241178855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:36 Heat of formation + Delta-G solvation = -138.970879 kcal Electronic energy + Delta-G solvation = -26177.188776 eV Core-core repulsion = 21855.687198 eV Total energy + Delta-G solvation = -4321.501578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.02838 -48.11784 -47.76891 -39.97090 -37.98028 -36.85786 -33.94900 -32.20920 -30.96636 -30.17295 -29.24833 -28.36085 -25.46323 -24.13161 -22.67870 -21.87654 -21.11310 -20.53734 -18.59263 -17.80936 -17.20098 -16.98708 -16.53778 -16.04981 -15.74347 -15.58081 -15.19774 -14.90672 -14.77131 -14.47133 -14.43692 -14.36900 -13.88673 -13.38666 -13.23663 -12.97680 -12.89606 -12.52632 -12.31700 -12.27312 -11.99921 -11.66405 -11.51358 -11.27335 -11.24619 -11.07540 -10.91678 -10.68662 -10.46252 -10.23032 -9.70306 -9.34823 -8.56021 -8.18504 -7.69893 -7.35590 -7.05803 -4.65140 1.14800 1.23178 2.44151 2.78869 2.87701 2.93435 2.94892 3.00945 3.59359 3.72755 4.10093 4.31483 4.62884 4.67244 4.74659 4.89762 4.97987 5.00828 5.18076 5.27752 5.37440 5.50652 5.52251 5.54647 5.77269 5.95025 6.08008 6.19142 6.21689 6.47907 6.70613 6.72854 6.75124 6.85940 6.95659 7.25434 7.39016 7.45408 7.74488 7.79773 7.97127 8.34212 8.57022 8.64982 9.86845 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.026474 B = 0.002973 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.398527 B = 9415.990871 C = 9754.428141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.309 6.309 4 C 0.105 3.895 5 C -0.193 4.193 6 C -0.059 4.059 7 C -0.028 4.028 8 C -0.246 4.246 9 C -0.050 4.050 10 C -0.177 4.177 11 C 0.138 3.862 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.773 5.773 16 Si 0.915 3.085 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.267 4.267 21 C 0.152 3.848 22 F -0.162 7.162 23 C 0.107 3.893 24 F -0.116 7.116 25 C 0.030 3.970 26 F -0.129 7.129 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.288 0.712 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 -7.611 0.696 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.223 6.223 4 C 0.059 3.941 5 C -0.212 4.212 6 C -0.077 4.077 7 C -0.029 4.029 8 C -0.248 4.248 9 C -0.068 4.068 10 C -0.196 4.196 11 C 0.135 3.865 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.396 5.396 16 Si 0.739 3.261 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.187 1.187 20 C -0.287 4.287 21 C 0.133 3.867 22 F -0.141 7.141 23 C 0.087 3.913 24 F -0.094 7.094 25 C 0.010 3.990 26 F -0.107 7.107 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.567 -7.300 0.467 14.541 hybrid contribution 0.673 0.336 0.055 0.754 sum -11.894 -6.965 0.522 13.793 Atomic orbital electron populations 1.21774 0.92676 1.02801 1.03632 1.22838 0.95890 0.81743 1.01682 1.86072 1.17862 1.29530 1.88840 1.18568 0.83350 0.91856 1.00349 1.21054 0.93864 0.97441 1.08798 1.21119 0.93701 0.96557 0.96351 1.18680 0.93602 0.90528 1.00090 1.17626 0.89156 1.19658 0.98399 1.20240 0.93974 0.97945 0.94685 1.21017 0.93089 1.04475 1.01066 1.17460 0.93022 0.86308 0.89740 1.19656 0.92192 1.41456 0.93659 0.89680 1.26057 1.01908 0.91800 0.94902 1.69817 1.39220 1.30290 1.00239 0.86233 0.81011 0.80430 0.78442 1.18449 1.20032 1.18666 1.20606 0.91151 1.13511 1.03436 1.17209 0.89119 0.97171 0.83244 1.91358 1.78072 1.88904 1.55783 1.17663 0.88653 0.81217 1.03790 1.91538 1.86910 1.37537 1.93404 1.16687 0.86203 0.82136 1.14020 1.91478 1.71142 1.53452 1.94654 0.90295 0.91485 0.91478 0.91737 0.91745 0.84333 0.84028 0.88247 0.85771 0.90116 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.48 5.46 37.16 0.20 0.69 16 3 O -0.31 -4.24 9.99 -19.31 -0.19 -4.43 16 4 C 0.10 1.60 6.70 -39.02 -0.26 1.34 16 5 C -0.19 -2.55 9.02 -39.48 -0.36 -2.91 16 6 C -0.06 -0.90 9.73 -39.20 -0.38 -1.29 16 7 C -0.03 -0.53 5.00 -104.80 -0.52 -1.06 16 8 C -0.25 -5.42 5.04 -104.57 -0.53 -5.94 16 9 C -0.05 -1.09 9.66 -39.65 -0.38 -1.47 16 10 C -0.18 -4.25 8.63 -39.28 -0.34 -4.59 16 11 C 0.14 3.46 5.57 -106.81 -0.60 2.87 16 12 C -0.44 -10.84 9.02 -37.90 -0.34 -11.18 16 13 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 14 C 0.07 1.72 5.13 -17.33 -0.09 1.63 16 15 N -0.77 -18.38 10.96 55.55 0.61 -17.77 16 16 Si 0.92 17.08 29.60 -169.99 -5.03 12.05 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 18 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 20 C -0.27 -6.48 9.70 -39.23 -0.38 -6.86 16 21 C 0.15 3.57 7.01 -39.49 -0.28 3.29 16 22 F -0.16 -3.74 16.64 2.25 0.04 -3.70 16 23 C 0.11 2.12 7.06 -38.97 -0.28 1.85 16 24 F -0.12 -2.53 16.58 2.25 0.04 -2.49 16 25 C 0.03 0.55 7.30 -39.30 -0.29 0.26 16 26 F -0.13 -2.38 17.01 2.25 0.04 -2.35 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 31 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 32 H 0.14 1.33 6.27 -52.49 -0.33 1.00 16 33 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 36 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 37 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -27.36 334.94 -7.42 -34.78 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.53 Total: 2.94 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -4.43 Total: -24.07 kcal Atomic # 7 Polarization: -18.38 SS G_CDS: 0.61 Total: -17.77 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.19 Total: -4.43 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.11 Total: -8.54 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.36 -7.42 -34.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241178855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.189 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds