Wall clock time and date at job start Tue Mar 31 2020 13:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42905 * 109.46991 * 2 1 4 4 C 1.35864 * 116.99940 * 180.02562 * 3 2 1 5 5 C 1.38967 * 119.89744 * 359.97178 * 4 3 2 6 6 C 1.37764 * 120.16344 * 179.76825 * 5 4 3 7 7 C 1.39730 * 119.96524 * 0.51175 * 6 5 4 8 8 C 1.47806 * 120.10145 * 179.76725 * 7 6 5 9 9 C 1.40020 * 119.90176 * 64.96684 * 8 7 6 10 10 C 1.36186 * 120.13228 * 180.25858 * 9 8 7 11 11 C 1.40989 * 119.93431 * 359.49989 * 10 9 8 12 12 C 1.40985 * 120.09968 * 180.23008 * 11 10 9 13 13 H 1.07997 * 120.00347 * 204.74747 * 12 11 10 14 14 C 1.39952 * 119.99649 * 24.74463 * 12 11 10 15 15 N 1.30837 * 119.99979 * 17.99337 * 14 12 11 16 16 Si 1.86798 * 120.00046 * 197.99481 * 14 12 11 17 17 H 1.48499 * 109.47147 * 59.99626 * 16 14 12 18 18 H 1.48503 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.46888 * 299.99769 * 16 14 12 20 20 C 1.40900 * 119.80520 * 0.25475 * 11 10 9 21 21 C 1.36415 * 119.86288 * 359.97438 * 20 11 10 22 22 F 1.35105 * 119.96168 * 180.02562 * 21 20 11 23 23 C 1.39918 * 119.80271 * 359.48931 * 7 6 5 24 24 F 1.35104 * 120.08280 * 180.22978 * 23 7 6 25 25 C 1.38195 * 119.83670 * 0.25580 * 23 7 6 26 26 F 1.35101 * 119.98871 * 179.97438 * 25 23 7 27 27 H 1.08998 * 109.46764 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46924 * 300.00196 * 1 2 3 29 29 H 1.09003 * 109.47116 * 59.99846 * 1 2 3 30 30 H 1.08997 * 109.46924 * 239.99804 * 2 1 3 31 31 H 1.09000 * 109.46958 * 119.99403 * 2 1 3 32 32 H 1.08000 * 119.92356 * 0.04457 * 5 4 3 33 33 H 1.08000 * 120.02134 * 180.27798 * 6 5 4 34 34 H 1.08000 * 119.93134 * 0.02562 * 9 8 7 35 35 H 1.08001 * 120.03041 * 179.77405 * 10 9 8 36 36 H 0.96997 * 119.99895 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.06244 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3533 1.5254 -0.0005 5 6 4.1979 0.4218 -0.0005 6 6 5.5645 0.5960 -0.0058 7 6 6.1038 1.8850 -0.0006 8 6 7.5695 2.0753 -0.0011 9 6 8.3268 1.6608 -1.1035 10 6 9.6782 1.8291 -1.1067 11 6 10.3148 2.4315 -0.0023 12 6 11.7131 2.6118 -0.0041 13 1 12.2493 2.6856 0.9305 14 6 12.4063 2.6952 -1.2170 15 7 11.7596 2.9592 -2.3233 16 14 14.2549 2.4295 -1.2565 17 1 14.5700 1.0674 -0.7561 18 1 14.7457 2.5710 -2.6509 19 1 14.9187 3.4397 -0.3937 20 6 9.5496 2.8523 1.1034 21 6 8.1969 2.6755 1.1000 22 9 7.4612 3.0787 2.1590 23 6 5.2521 2.9951 -0.0006 24 9 5.7675 4.2440 -0.0002 25 6 3.8825 2.8110 -0.0006 26 9 3.0573 3.8807 -0.0002 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.7820 -0.5749 -0.0007 33 1 6.2187 -0.2633 -0.0103 34 1 7.8386 1.2033 -1.9513 35 1 10.2612 1.5054 -1.9563 36 1 12.2400 3.0167 -3.1640 37 1 10.0330 3.3138 1.9517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241178855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:36 Heat of formation + Delta-G solvation = -150.961477 kcal Electronic energy + Delta-G solvation = -26177.708728 eV Core-core repulsion = 21855.687198 eV Total energy + Delta-G solvation = -4322.021530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.50272 -49.71488 -49.50141 -41.10457 -39.56135 -38.25902 -35.66258 -33.25645 -32.27883 -31.45866 -30.98432 -29.92130 -27.08087 -25.09061 -24.11944 -23.16946 -22.80714 -22.08933 -19.75423 -19.61852 -18.56919 -18.36195 -17.73036 -17.51676 -17.21467 -16.97910 -16.79160 -16.52538 -16.37024 -16.26552 -15.96429 -15.48095 -15.33771 -14.95131 -14.46885 -14.23416 -14.06099 -13.93135 -13.71440 -13.44168 -13.24495 -12.99560 -12.91671 -12.82990 -12.72883 -12.33342 -12.18860 -12.09472 -11.93079 -11.61037 -11.43751 -11.07280 -9.90022 -9.70576 -9.41832 -9.03717 -8.77974 -6.49412 -0.16082 -0.08370 0.72952 0.92369 1.40326 1.49622 1.54025 1.86229 2.17369 2.29674 2.55308 2.89126 3.36405 3.49146 3.58403 3.71191 3.74416 3.99933 4.06077 4.10042 4.19268 4.31178 4.40991 4.66569 4.82209 4.86663 4.89741 4.93541 4.96828 4.97807 5.02465 5.14956 5.25931 5.26837 5.47150 5.58769 5.66862 5.92875 5.95633 6.16526 6.21436 6.51630 6.75339 6.81985 8.17363 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.026474 B = 0.002973 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.398527 B = 9415.990871 C = 9754.428141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 O -0.324 6.324 4 C 0.122 3.878 5 C -0.169 4.169 6 C -0.044 4.044 7 C -0.059 4.059 8 C -0.234 4.234 9 C -0.047 4.047 10 C -0.192 4.192 11 C 0.112 3.888 12 C -0.476 4.476 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.803 5.803 16 Si 0.989 3.011 17 H -0.255 1.255 18 H -0.264 1.264 19 H -0.261 1.261 20 C -0.287 4.287 21 C 0.135 3.865 22 F -0.163 7.163 23 C 0.082 3.918 24 F -0.140 7.140 25 C 0.007 3.993 26 F -0.139 7.139 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.167 0.833 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.297 0.703 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 -10.463 0.106 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.036 4.036 3 O -0.238 6.238 4 C 0.075 3.925 5 C -0.187 4.187 6 C -0.062 4.062 7 C -0.060 4.060 8 C -0.236 4.236 9 C -0.065 4.065 10 C -0.211 4.211 11 C 0.109 3.891 12 C -0.503 4.503 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.427 5.427 16 Si 0.808 3.192 17 H -0.179 1.179 18 H -0.188 1.188 19 H -0.185 1.185 20 C -0.307 4.307 21 C 0.116 3.884 22 F -0.142 7.142 23 C 0.061 3.939 24 F -0.119 7.119 25 C -0.013 4.013 26 F -0.118 7.118 27 H 0.126 0.874 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.206 0.794 33 H 0.185 0.815 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.865 -10.159 -0.118 17.189 hybrid contribution 0.770 1.145 0.257 1.404 sum -13.095 -9.013 0.140 15.898 Atomic orbital electron populations 1.21832 0.91427 1.04478 1.03023 1.23336 0.97008 0.79634 1.03589 1.86101 1.16697 1.32907 1.88123 1.18674 0.84611 0.91101 0.98114 1.21489 0.92509 0.98913 1.05770 1.21398 0.95088 0.95397 0.94294 1.18677 0.91873 0.92144 1.03339 1.17891 0.91011 1.17419 0.97243 1.20522 0.93303 0.97304 0.95390 1.21051 0.94081 1.05212 1.00747 1.17766 0.93794 0.87128 0.90408 1.19902 0.92479 1.43335 0.94606 0.89756 1.26880 1.06462 0.90716 0.93932 1.69844 1.41265 1.30580 1.00980 0.85142 0.74893 0.80302 0.78831 1.17923 1.18849 1.18516 1.20710 0.91814 1.14486 1.03684 1.17442 0.89051 0.97946 0.83999 1.91341 1.77986 1.89008 1.55899 1.17937 0.89712 0.80514 1.05700 1.91463 1.87382 1.39144 1.93904 1.16892 0.85587 0.83212 1.15656 1.91439 1.71208 1.54263 1.94899 0.87424 0.92178 0.92091 0.89629 0.89801 0.79409 0.81514 0.85358 0.86387 0.89216 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.32 -7.88 9.99 -92.02 -0.92 -8.80 16 4 C 0.12 3.38 6.70 22.63 0.15 3.53 16 5 C -0.17 -3.68 9.02 22.33 0.20 -3.48 16 6 C -0.04 -1.19 9.73 22.52 0.22 -0.97 16 7 C -0.06 -2.22 5.00 -19.98 -0.10 -2.32 16 8 C -0.23 -10.31 5.04 -19.83 -0.10 -10.41 16 9 C -0.05 -2.04 9.66 22.22 0.21 -1.83 16 10 C -0.19 -9.40 8.63 22.47 0.19 -9.21 16 11 C 0.11 5.85 5.57 -21.28 -0.12 5.73 16 12 C -0.48 -24.16 9.02 23.36 0.21 -23.95 16 13 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 14 C 0.04 1.80 5.13 85.26 0.44 2.24 16 15 N -0.80 -38.81 10.96 21.83 0.24 -38.57 16 16 Si 0.99 34.93 29.60 68.60 2.03 36.96 16 17 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 18 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 19 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 20 C -0.29 -14.59 9.70 22.50 0.22 -14.37 16 21 C 0.13 6.53 7.01 22.33 0.16 6.69 16 22 F -0.16 -7.77 16.64 44.97 0.75 -7.03 16 23 C 0.08 3.26 7.06 22.67 0.16 3.42 16 24 F -0.14 -6.41 16.58 44.97 0.75 -5.67 16 25 C 0.01 0.26 7.30 22.45 0.16 0.42 16 26 F -0.14 -5.23 17.01 44.97 0.77 -4.47 16 27 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.84 7.65 -2.39 -0.02 0.82 16 31 H 0.08 0.85 7.65 -2.39 -0.02 0.83 16 32 H 0.19 2.28 6.27 -2.91 -0.02 2.26 16 33 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.12 5.86 6.16 -2.91 -0.02 5.84 16 36 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 37 H 0.10 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -63.05 334.94 7.88 -55.17 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.13 Total: 16.85 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.14 Total: -44.46 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.24 Total: -38.57 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.92 Total: -8.80 kcal Atomic # 9 Polarization: -19.42 SS G_CDS: 2.26 Total: -17.16 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.96 kcal Total: -63.05 7.88 -55.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241178855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.787 kcal (2) G-P(sol) polarization free energy of solvation -63.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds