Wall clock time and date at job start Tue Mar 31 2020 13:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46386 * 2 1 4 4 C 1.36000 * 116.99557 * 180.02562 * 3 2 1 5 5 C 1.38274 * 119.95784 * 359.97438 * 4 3 2 6 6 C 1.39634 * 119.84583 * 179.97438 * 5 4 3 7 7 C 1.47855 * 120.11316 * 180.02562 * 6 5 4 8 8 C 1.39988 * 119.89703 * 64.99954 * 7 6 5 9 9 C 1.36211 * 120.13482 * 180.02562 * 8 7 6 10 10 C 1.40988 * 119.92588 * 0.22761 * 9 8 7 11 11 C 1.41003 * 120.09672 * 179.74621 * 10 9 8 12 12 H 1.07996 * 120.00107 * 204.71590 * 11 10 9 13 13 C 1.39972 * 119.99625 * 24.72001 * 11 10 9 14 14 N 1.30819 * 120.00281 * 17.98123 * 13 11 10 15 15 Si 1.86801 * 119.99571 * 197.98418 * 13 11 10 16 16 H 1.48497 * 109.47068 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46915 * 120.00208 * 15 13 11 18 18 H 1.48501 * 109.46715 * 239.99779 * 15 13 11 19 19 C 1.40884 * 119.80362 * 359.49955 * 10 9 8 20 20 C 1.36438 * 119.86197 * 0.50126 * 19 10 9 21 21 F 1.35096 * 119.96545 * 179.74820 * 20 19 10 22 22 C 1.39893 * 119.77086 * 0.27662 * 6 5 4 23 23 F 1.35104 * 120.04105 * 179.70880 * 22 6 5 24 24 C 1.38152 * 119.92189 * 359.46734 * 22 6 5 25 25 C 1.38487 * 120.15047 * 0.51683 * 24 22 6 26 26 F 1.35099 * 119.88687 * 179.74072 * 25 24 22 27 27 H 1.08999 * 109.46602 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47070 * 299.99716 * 1 2 3 29 29 H 1.08999 * 109.47362 * 60.00117 * 1 2 3 30 30 H 1.08988 * 109.46844 * 240.00039 * 2 1 3 31 31 H 1.09003 * 109.47298 * 119.99379 * 2 1 3 32 32 H 1.07999 * 120.08221 * 359.96547 * 5 4 3 33 33 H 1.08001 * 119.93399 * 359.97438 * 8 7 6 34 34 H 1.07997 * 120.03530 * 179.97438 * 9 8 7 35 35 H 0.96999 * 120.00550 * 179.97438 * 14 13 11 36 36 H 1.08006 * 120.06720 * 180.27471 * 19 10 9 37 37 H 1.08000 * 119.92481 * 180.22872 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3545 1.5256 -0.0005 5 6 4.1960 0.4285 -0.0005 6 6 5.5800 0.6142 -0.0016 7 6 6.4853 -0.5548 -0.0022 8 6 6.5062 -1.4206 -1.1020 9 6 7.3380 -2.4993 -1.1074 10 6 8.1760 -2.7468 -0.0010 11 6 9.0346 -3.8653 -0.0005 12 1 9.3659 -4.2913 0.9350 13 6 9.4574 -4.4234 -1.2125 14 7 9.3628 -3.7323 -2.3192 15 14 10.1568 -6.1552 -1.2496 16 1 10.1569 -6.7185 0.1244 17 1 9.3223 -7.0071 -2.1344 18 1 11.5478 -6.1162 -1.7682 19 6 8.1569 -1.8703 1.1019 20 6 7.3205 -0.7924 1.0985 21 9 7.2968 0.0465 2.1572 22 6 6.1069 1.9101 0.0031 23 9 7.4451 2.0961 0.0080 24 6 5.2573 2.9995 -0.0023 25 6 3.8853 2.8116 -0.0015 26 9 3.0594 3.8807 -0.0015 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.7840 -0.5698 0.0005 33 1 5.8609 -1.2335 -1.9475 34 1 7.3525 -3.1664 -1.9565 35 1 9.6562 -4.1189 -3.1591 36 1 8.8004 -2.0534 1.9498 37 1 5.6641 3.9999 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243528362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:50 Heat of formation + Delta-G solvation = -141.007809 kcal Electronic energy + Delta-G solvation = -26291.865681 eV Core-core repulsion = 21970.275775 eV Total energy + Delta-G solvation = -4321.589906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.69133 -48.43010 -47.82208 -39.88546 -37.89297 -36.86117 -34.02601 -32.05847 -31.49678 -29.62854 -29.26354 -28.37496 -25.59117 -24.14545 -22.48808 -21.91966 -21.13779 -20.66475 -18.21536 -17.85084 -17.53657 -17.11355 -16.38641 -15.87627 -15.46908 -15.35185 -15.21548 -14.98980 -14.93649 -14.61703 -14.51620 -14.11939 -14.04410 -13.47151 -13.13715 -13.06601 -12.85288 -12.59234 -12.35813 -12.07862 -11.93899 -11.71768 -11.52928 -11.37454 -11.20978 -11.10578 -10.83716 -10.62891 -10.44572 -10.24302 -9.74387 -9.39071 -8.81540 -8.00520 -7.72485 -7.40080 -7.09748 -4.69149 1.11192 1.27511 2.39260 2.74572 2.91505 2.93878 2.98033 3.03748 3.58459 3.70168 4.14252 4.26107 4.63015 4.74571 4.80780 4.88388 5.07215 5.13219 5.25679 5.35764 5.36489 5.50175 5.63544 5.64001 5.86093 6.01096 6.05390 6.06257 6.16754 6.42697 6.65789 6.69288 6.73334 6.84255 6.91446 7.30055 7.35002 7.41841 7.69887 7.75988 7.92990 8.30473 8.53203 8.60702 9.82859 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003496 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.021770 B = 8008.012595 C = 8945.691026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.310 6.310 4 C 0.089 3.911 5 C -0.154 4.154 6 C 0.014 3.986 7 C -0.252 4.252 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.138 3.862 11 C -0.441 4.441 12 H 0.086 0.914 13 C 0.075 3.925 14 N -0.771 5.771 15 Si 0.914 3.086 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.271 1.271 19 C -0.267 4.267 20 C 0.154 3.846 21 F -0.161 7.161 22 C 0.094 3.906 23 F -0.125 7.125 24 C -0.154 4.154 25 C 0.074 3.926 26 F -0.133 7.133 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.287 0.713 36 H 0.108 0.892 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 3.905 0.717 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.225 6.225 4 C 0.042 3.958 5 C -0.173 4.173 6 C 0.012 3.988 7 C -0.254 4.254 8 C -0.069 4.069 9 C -0.196 4.196 10 C 0.135 3.865 11 C -0.468 4.468 12 H 0.104 0.896 13 C -0.147 4.147 14 N -0.394 5.394 15 Si 0.738 3.262 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.287 4.287 20 C 0.135 3.865 21 F -0.140 7.140 22 C 0.074 3.926 23 F -0.104 7.104 24 C -0.173 4.173 25 C 0.055 3.945 26 F -0.112 7.112 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.522 4.110 0.496 11.307 hybrid contribution 0.636 -0.496 0.028 0.807 sum -9.885 3.614 0.524 10.538 Atomic orbital electron populations 1.21763 0.92690 1.02848 1.03412 1.22859 0.95826 0.81717 1.02028 1.86094 1.17778 1.29600 1.89014 1.18787 0.83432 0.92517 1.01016 1.21216 0.92208 0.98012 1.05846 1.18702 0.92601 0.91690 0.95759 1.17672 1.07732 1.01322 0.98647 1.20229 0.97947 0.93937 0.94755 1.21020 0.98203 0.99318 1.01038 1.17471 0.89329 0.90018 0.89721 1.19739 1.23428 1.09945 0.93725 0.89566 1.26063 0.94122 0.99611 0.94876 1.69820 1.32919 1.36443 1.00252 0.86145 0.79014 0.81042 0.80024 1.18037 1.19328 1.19618 1.20616 1.06253 0.98283 1.03529 1.17173 0.96933 0.89229 0.83195 1.91358 1.95799 1.71128 1.55749 1.17463 0.77776 0.92647 1.04735 1.91518 1.29306 1.95797 1.93744 1.20705 0.90799 1.00003 1.05841 1.16442 0.86851 0.80954 1.10302 1.91473 1.71425 1.53803 1.94464 0.90267 0.91586 0.91574 0.91588 0.91605 0.83640 0.88310 0.85753 0.90179 0.87410 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.31 -4.45 10.00 -19.74 -0.20 -4.65 16 4 C 0.09 1.39 6.69 -39.24 -0.26 1.13 16 5 C -0.15 -2.51 8.72 -39.05 -0.34 -2.85 16 6 C 0.01 0.26 5.00 -104.82 -0.52 -0.26 16 7 C -0.25 -5.46 5.04 -104.57 -0.53 -5.99 16 8 C -0.05 -1.08 9.66 -39.66 -0.38 -1.47 16 9 C -0.18 -4.19 8.63 -39.27 -0.34 -4.52 16 10 C 0.14 3.41 5.57 -106.81 -0.60 2.82 16 11 C -0.44 -10.67 9.03 -37.89 -0.34 -11.02 16 12 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 13 C 0.07 1.69 5.13 -17.33 -0.09 1.60 16 14 N -0.77 -18.09 10.96 55.55 0.61 -17.48 16 15 Si 0.91 16.82 29.60 -169.99 -5.03 11.79 16 16 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 17 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 C -0.27 -6.38 9.70 -39.23 -0.38 -6.76 16 20 C 0.15 3.56 6.99 -39.49 -0.28 3.28 16 21 F -0.16 -3.64 16.63 2.25 0.04 -3.60 16 22 C 0.09 1.73 7.04 -38.99 -0.27 1.45 16 23 F -0.13 -2.52 16.66 2.25 0.04 -2.48 16 24 C -0.15 -2.41 9.98 -39.52 -0.39 -2.81 16 25 C 0.07 1.18 7.31 -39.16 -0.29 0.89 16 26 F -0.13 -2.08 17.10 2.25 0.04 -2.04 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 7.66 -51.94 -0.40 0.27 16 31 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 32 H 0.15 2.13 6.28 -52.49 -0.33 1.80 16 33 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.12 2.99 6.16 -52.49 -0.32 2.66 16 35 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 36 H 0.11 2.46 8.06 -52.48 -0.42 2.03 16 37 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -26.26 335.06 -7.42 -33.68 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.53 Total: 4.35 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -4.43 Total: -24.62 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.61 Total: -17.48 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 0.11 Total: -8.13 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.26 -7.42 -33.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243528362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.331 kcal (2) G-P(sol) polarization free energy of solvation -26.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds