Wall clock time and date at job start Tue Mar 31 2020 13:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46386 * 2 1 4 4 C 1.36000 * 116.99557 * 180.02562 * 3 2 1 5 5 C 1.38274 * 119.95784 * 359.97438 * 4 3 2 6 6 C 1.39634 * 119.84583 * 179.97438 * 5 4 3 7 7 C 1.47855 * 120.11316 * 180.02562 * 6 5 4 8 8 C 1.39988 * 119.89703 * 64.99954 * 7 6 5 9 9 C 1.36211 * 120.13482 * 180.02562 * 8 7 6 10 10 C 1.40988 * 119.92588 * 0.22761 * 9 8 7 11 11 C 1.41003 * 120.09672 * 179.74621 * 10 9 8 12 12 H 1.07996 * 120.00107 * 204.71590 * 11 10 9 13 13 C 1.39972 * 119.99625 * 24.72001 * 11 10 9 14 14 N 1.30819 * 120.00281 * 17.98123 * 13 11 10 15 15 Si 1.86801 * 119.99571 * 197.98418 * 13 11 10 16 16 H 1.48497 * 109.47068 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46915 * 120.00208 * 15 13 11 18 18 H 1.48501 * 109.46715 * 239.99779 * 15 13 11 19 19 C 1.40884 * 119.80362 * 359.49955 * 10 9 8 20 20 C 1.36438 * 119.86197 * 0.50126 * 19 10 9 21 21 F 1.35096 * 119.96545 * 179.74820 * 20 19 10 22 22 C 1.39893 * 119.77086 * 0.27662 * 6 5 4 23 23 F 1.35104 * 120.04105 * 179.70880 * 22 6 5 24 24 C 1.38152 * 119.92189 * 359.46734 * 22 6 5 25 25 C 1.38487 * 120.15047 * 0.51683 * 24 22 6 26 26 F 1.35099 * 119.88687 * 179.74072 * 25 24 22 27 27 H 1.08999 * 109.46602 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47070 * 299.99716 * 1 2 3 29 29 H 1.08999 * 109.47362 * 60.00117 * 1 2 3 30 30 H 1.08988 * 109.46844 * 240.00039 * 2 1 3 31 31 H 1.09003 * 109.47298 * 119.99379 * 2 1 3 32 32 H 1.07999 * 120.08221 * 359.96547 * 5 4 3 33 33 H 1.08001 * 119.93399 * 359.97438 * 8 7 6 34 34 H 1.07997 * 120.03530 * 179.97438 * 9 8 7 35 35 H 0.96999 * 120.00550 * 179.97438 * 14 13 11 36 36 H 1.08006 * 120.06720 * 180.27471 * 19 10 9 37 37 H 1.08000 * 119.92481 * 180.22872 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3545 1.5256 -0.0005 5 6 4.1960 0.4285 -0.0005 6 6 5.5800 0.6142 -0.0016 7 6 6.4853 -0.5548 -0.0022 8 6 6.5062 -1.4206 -1.1020 9 6 7.3380 -2.4993 -1.1074 10 6 8.1760 -2.7468 -0.0010 11 6 9.0346 -3.8653 -0.0005 12 1 9.3659 -4.2913 0.9350 13 6 9.4574 -4.4234 -1.2125 14 7 9.3628 -3.7323 -2.3192 15 14 10.1568 -6.1552 -1.2496 16 1 10.1569 -6.7185 0.1244 17 1 9.3223 -7.0071 -2.1344 18 1 11.5478 -6.1162 -1.7682 19 6 8.1569 -1.8703 1.1019 20 6 7.3205 -0.7924 1.0985 21 9 7.2968 0.0465 2.1572 22 6 6.1069 1.9101 0.0031 23 9 7.4451 2.0961 0.0080 24 6 5.2573 2.9995 -0.0023 25 6 3.8853 2.8116 -0.0015 26 9 3.0594 3.8807 -0.0015 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.7840 -0.5698 0.0005 33 1 5.8609 -1.2335 -1.9475 34 1 7.3525 -3.1664 -1.9565 35 1 9.6562 -4.1189 -3.1591 36 1 8.8004 -2.0534 1.9498 37 1 5.6641 3.9999 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243528362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:49 Heat of formation + Delta-G solvation = -151.229450 kcal Electronic energy + Delta-G solvation = -26292.308925 eV Core-core repulsion = 21970.275775 eV Total energy + Delta-G solvation = -4322.033150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.95961 -49.94009 -49.59373 -41.09468 -39.50353 -38.24565 -35.72466 -33.32623 -32.64878 -31.20038 -30.85487 -29.85944 -27.21225 -25.26322 -23.95963 -23.20837 -22.71105 -22.25849 -19.63742 -19.48281 -18.83044 -18.43667 -17.60690 -17.43471 -17.00340 -16.90942 -16.68255 -16.44970 -16.30470 -16.24172 -16.13621 -15.49729 -15.29927 -14.95260 -14.55131 -14.28491 -14.06767 -14.01300 -13.66570 -13.60674 -13.20306 -12.93792 -12.91648 -12.86246 -12.72955 -12.40141 -12.32230 -12.01832 -11.91492 -11.60376 -11.45256 -11.09393 -10.16253 -9.61766 -9.35246 -9.04671 -8.79783 -6.51173 -0.24117 -0.03482 0.69691 0.90655 1.40591 1.46993 1.56392 1.97839 2.17025 2.23848 2.54406 2.85103 3.31458 3.44987 3.56619 3.61716 3.69074 3.99407 4.05167 4.15548 4.26121 4.29861 4.38037 4.64021 4.72146 4.75310 4.85359 4.88309 4.93412 4.94958 5.00304 5.09221 5.17347 5.23925 5.47129 5.56710 5.63019 5.90316 5.94135 6.14511 6.17925 6.50103 6.73891 6.79917 8.15982 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003496 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.021770 B = 8008.012595 C = 8945.691026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 O -0.317 6.317 4 C 0.098 3.902 5 C -0.146 4.146 6 C -0.011 4.011 7 C -0.242 4.242 8 C -0.047 4.047 9 C -0.191 4.191 10 C 0.113 3.887 11 C -0.474 4.474 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.801 5.801 15 Si 0.988 3.012 16 H -0.257 1.257 17 H -0.259 1.259 18 H -0.265 1.265 19 C -0.285 4.285 20 C 0.140 3.860 21 F -0.161 7.161 22 C 0.072 3.928 23 F -0.141 7.141 24 C -0.138 4.138 25 C 0.076 3.924 26 F -0.129 7.129 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.297 0.703 36 H 0.107 0.893 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 3.828 0.199 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 O -0.232 6.232 4 C 0.051 3.949 5 C -0.165 4.165 6 C -0.012 4.012 7 C -0.244 4.244 8 C -0.066 4.066 9 C -0.210 4.210 10 C 0.110 3.890 11 C -0.501 4.501 12 H 0.103 0.897 13 C -0.179 4.179 14 N -0.425 5.425 15 Si 0.808 3.192 16 H -0.180 1.180 17 H -0.183 1.183 18 H -0.190 1.190 19 C -0.306 4.306 20 C 0.121 3.879 21 F -0.140 7.140 22 C 0.053 3.947 23 F -0.120 7.120 24 C -0.157 4.157 25 C 0.056 3.944 26 F -0.108 7.108 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.118 4.051 -0.016 12.778 hybrid contribution 0.956 -0.331 0.202 1.032 sum -11.162 3.720 0.186 11.768 Atomic orbital electron populations 1.21798 0.90690 1.04365 1.03436 1.23227 0.97465 0.80182 1.02730 1.86122 1.16657 1.31898 1.88503 1.18808 0.84171 0.92214 0.99714 1.21242 0.91019 0.99102 1.05094 1.18671 0.93319 0.90980 0.98206 1.17907 1.07071 1.01736 0.97637 1.20481 0.97549 0.93103 0.95450 1.21037 0.98955 1.00250 1.00758 1.17763 0.90153 0.90685 0.90364 1.19976 1.24621 1.10872 0.94638 0.89698 1.26867 0.93925 1.03191 0.93916 1.69839 1.33470 1.38150 1.01025 0.85061 0.78391 0.75804 0.79983 1.18024 1.18303 1.19014 1.20725 1.07113 0.98970 1.03769 1.17355 0.97512 0.89195 0.83845 1.91346 1.95837 1.71014 1.55762 1.17642 0.77448 0.93270 1.06385 1.91476 1.30527 1.95892 1.94100 1.20842 0.90411 1.00454 1.04035 1.16548 0.86954 0.81206 1.09737 1.91488 1.71291 1.53642 1.94363 0.88004 0.91627 0.91491 0.90713 0.91066 0.82109 0.85761 0.86438 0.89184 0.87494 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.04 0.73 5.46 71.98 0.39 1.12 16 3 O -0.32 -8.29 10.00 -93.56 -0.94 -9.23 16 4 C 0.10 2.84 6.69 22.49 0.15 2.99 16 5 C -0.15 -4.49 8.72 22.62 0.20 -4.29 16 6 C -0.01 -0.39 5.00 -19.99 -0.10 -0.49 16 7 C -0.24 -10.48 5.04 -19.83 -0.10 -10.58 16 8 C -0.05 -2.05 9.66 22.22 0.21 -1.84 16 9 C -0.19 -9.22 8.63 22.47 0.19 -9.03 16 10 C 0.11 5.80 5.57 -21.28 -0.12 5.68 16 11 C -0.47 -23.62 9.03 23.37 0.21 -23.41 16 12 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 13 C 0.04 1.82 5.13 85.26 0.44 2.25 16 14 N -0.80 -37.98 10.96 21.83 0.24 -37.74 16 15 Si 0.99 34.28 29.60 68.60 2.03 36.31 16 16 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 17 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 18 H -0.27 -8.91 7.11 99.48 0.71 -8.21 16 19 C -0.29 -14.16 9.70 22.50 0.22 -13.94 16 20 C 0.14 6.60 6.99 22.33 0.16 6.76 16 21 F -0.16 -7.35 16.63 44.97 0.75 -6.60 16 22 C 0.07 2.60 7.04 22.65 0.16 2.76 16 23 F -0.14 -5.69 16.66 44.97 0.75 -4.94 16 24 C -0.14 -4.06 9.98 22.31 0.22 -3.83 16 25 C 0.08 2.21 7.31 22.54 0.16 2.38 16 26 F -0.13 -3.70 17.10 44.97 0.77 -2.93 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 31 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 32 H 0.16 4.36 6.28 -2.91 -0.02 4.34 16 33 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.12 5.77 6.16 -2.91 -0.02 5.75 16 35 H 0.30 12.47 8.30 -92.71 -0.77 11.70 16 36 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 37 H 0.18 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -56.91 335.06 7.87 -49.05 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 1.13 Total: 20.85 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.14 Total: -44.77 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.24 Total: -37.74 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.94 Total: -9.23 kcal Atomic # 9 Polarization: -16.74 SS G_CDS: 2.27 Total: -14.47 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 2.03 Total: 36.31 kcal Total: -56.91 7.87 -49.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243528362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.182 kcal (2) G-P(sol) polarization free energy of solvation -56.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds