Wall clock time and date at job start Tue Mar 31 2020 12:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86793 * 120.00280 * 2 1 4 4 H 1.48503 * 109.47213 * 239.99931 * 3 2 1 5 5 H 1.48504 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47558 * 120.00195 * 3 2 1 7 7 C 1.40293 * 119.99384 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 189.90319 * 7 2 1 9 9 C 1.40863 * 120.00229 * 9.90878 * 7 2 1 10 10 C 1.40700 * 120.33113 * 34.92018 * 9 7 2 11 11 C 1.37599 * 119.88785 * 180.25751 * 10 9 7 12 12 C 1.38844 * 120.58126 * 359.74127 * 11 10 9 13 13 C 1.38199 * 120.67945 * 359.97438 * 12 11 10 14 14 C 1.39288 * 120.09157 * 0.02562 * 13 12 11 15 15 C 1.47280 * 120.29222 * 179.97438 * 14 13 12 16 16 O 1.21531 * 120.00413 * 177.16793 * 15 14 13 17 17 O 1.34807 * 120.00044 * 357.15806 * 15 14 13 18 18 C 1.45196 * 117.00080 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.47125 * 180.02562 * 18 17 15 20 20 N 1.30103 * 124.95234 * 180.02562 * 19 18 17 21 21 C 1.35788 * 109.64627 * 179.97438 * 20 19 18 22 22 C 1.39737 * 133.60127 * 179.97438 * 21 20 19 23 23 C 1.36603 * 119.88516 * 179.72047 * 22 21 20 24 24 C 1.38776 * 120.66793 * 0.27923 * 23 22 21 25 25 C 1.37857 * 120.44984 * 359.97438 * 24 23 22 26 26 C 1.38822 * 119.69159 * 0.02562 * 25 24 23 27 27 N 1.36050 * 124.94812 * 0.56850 * 19 18 17 28 28 H 0.97000 * 126.35005 * 359.45657 * 27 19 18 29 29 H 0.97005 * 119.99412 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.05789 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.71344 * 179.77026 * 11 10 9 32 32 H 1.07997 * 119.66056 * 180.02562 * 12 11 10 33 33 H 1.08006 * 119.95576 * 180.02562 * 13 12 11 34 34 H 1.09002 * 109.47167 * 60.00876 * 18 17 15 35 35 H 1.09004 * 109.47470 * 300.00443 * 18 17 15 36 36 H 1.07999 * 120.06189 * 359.97438 * 22 21 20 37 37 H 1.07994 * 119.66939 * 180.29970 * 23 22 21 38 38 H 1.07998 * 119.77730 * 179.97438 * 24 23 22 39 39 H 1.08005 * 120.15218 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6176 0.0000 4 1 3.0940 1.6963 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6963 1.2124 7 6 2.0075 -1.2151 0.0005 8 1 3.0755 -1.2220 0.1614 9 6 1.3189 -2.4259 -0.2088 10 6 0.2192 -2.4756 -1.0852 11 6 -0.4501 -3.6621 -1.2789 12 6 -0.0471 -4.8161 -0.6204 13 6 1.0333 -4.7957 0.2410 14 6 1.7312 -3.6099 0.4579 15 6 2.8830 -3.5830 1.3755 16 8 3.5198 -2.5582 1.5215 17 8 3.2308 -4.6950 2.0535 18 6 4.3760 -4.5951 2.9405 19 6 4.6129 -5.9260 3.6067 20 7 5.5627 -6.1733 4.4608 21 6 5.4884 -7.4679 4.8639 22 6 6.2401 -8.2466 5.7478 23 6 5.9066 -9.5550 5.9547 24 6 4.8292 -10.1244 5.2906 25 6 4.0767 -9.3767 4.4102 26 6 4.4008 -8.0454 4.1873 27 7 3.8713 -7.0467 3.3947 28 1 3.1059 -7.1264 2.8042 29 1 -0.4849 0.8401 0.0004 30 1 -0.1013 -1.5831 -1.6021 31 1 -1.2961 -3.6962 -1.9493 32 1 -0.5830 -5.7394 -0.7837 33 1 1.3370 -5.7004 0.7469 34 1 4.1823 -3.8376 3.7000 35 1 5.2582 -4.3152 2.3648 36 1 7.0808 -7.8137 6.2695 37 1 6.4869 -10.1524 6.6422 38 1 4.5785 -11.1604 5.4647 39 1 3.2390 -9.8246 3.8963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791643607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:50 Heat of formation + Delta-G solvation = 3.596483 kcal Electronic energy + Delta-G solvation = -25164.875415 eV Core-core repulsion = 21423.705513 eV Total energy + Delta-G solvation = -3741.169902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21693 -39.60142 -37.64435 -37.25197 -35.53572 -33.87066 -33.22721 -30.86867 -30.11545 -30.06422 -29.68139 -27.22008 -25.62354 -22.98547 -22.53912 -22.02990 -21.18309 -20.88186 -19.86217 -18.05035 -17.58032 -17.37830 -16.57813 -16.20424 -16.03048 -15.42931 -15.10555 -15.04269 -14.41627 -14.36290 -14.03617 -13.68109 -13.46589 -13.02140 -12.86347 -12.64076 -12.23206 -12.00149 -11.90812 -11.71264 -11.65803 -11.24384 -11.21782 -10.83034 -10.80858 -10.75270 -10.36937 -10.27684 -10.08879 -9.86384 -9.43089 -8.95760 -8.48534 -8.22886 -7.79779 -7.56905 -7.01054 -4.63055 0.81650 1.40150 2.04311 2.64638 2.69278 2.79447 2.97252 2.99749 3.04723 3.13770 3.71935 3.75304 3.82966 4.26431 4.48075 4.50379 4.84054 4.96778 5.20404 5.27532 5.31742 5.34409 5.42518 5.43483 5.59979 5.88232 5.95556 5.96857 6.18658 6.25525 6.35651 6.38957 6.42260 6.72722 6.77818 6.89746 7.00339 7.07198 7.25050 7.30682 7.46360 7.74469 7.77010 7.80545 7.99821 8.43595 8.58398 8.64538 8.86977 9.93656 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002852 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.907990 B = 9815.199642 C =11099.499503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.112 0.888 9 C 0.148 3.852 10 C -0.145 4.145 11 C -0.090 4.090 12 C -0.246 4.246 13 C -0.037 4.037 14 C -0.251 4.251 15 C 0.510 3.490 16 O -0.508 6.508 17 O -0.378 6.378 18 C 0.145 3.855 19 C 0.303 3.697 20 N -0.492 5.492 21 C 0.050 3.950 22 C -0.065 4.065 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.108 4.108 26 C 0.044 3.956 27 N -0.582 5.582 28 H 0.431 0.569 29 H 0.287 0.713 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -13.064 6.069 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.446 4.446 8 H 0.129 0.871 9 C 0.144 3.856 10 C -0.164 4.164 11 C -0.109 4.109 12 C -0.265 4.265 13 C -0.056 4.056 14 C -0.254 4.254 15 C 0.361 3.639 16 O -0.398 6.398 17 O -0.298 6.298 18 C 0.069 3.931 19 C 0.035 3.965 20 N -0.214 5.214 21 C -0.069 4.069 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.066 4.066 27 N -0.192 5.192 28 H 0.272 0.728 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.652 -12.006 6.439 14.750 hybrid contribution -0.764 0.170 -0.442 0.899 sum 4.888 -11.837 5.996 14.141 Atomic orbital electron populations 1.69696 1.07903 1.30257 1.32729 1.26206 0.94859 1.02093 0.91917 0.86155 0.80028 0.78938 0.80573 1.18499 1.20241 1.18380 1.20358 0.97857 0.89552 1.36802 0.87082 1.17436 0.90057 0.90902 0.87220 1.21305 0.98385 0.96542 1.00171 1.20866 0.98048 0.93499 0.98471 1.20359 1.02144 0.97568 1.06435 1.20756 0.93874 0.95550 0.95398 1.18636 1.01814 0.97040 1.07927 1.21355 0.84434 0.79553 0.78554 1.90751 1.53276 1.31342 1.64459 1.86442 1.46355 1.41812 1.55161 1.20923 0.90048 0.89078 0.93070 1.23186 0.89073 0.89053 0.95173 1.70298 1.21813 1.14845 1.14487 1.19072 0.96763 0.90531 1.00521 1.20001 0.98915 0.92919 0.96639 1.20622 0.98424 0.94743 1.01281 1.20862 0.95566 0.99581 0.96658 1.19994 1.01577 0.90174 1.01124 1.18964 0.98250 0.91893 0.97535 1.43023 1.29533 1.08718 1.37975 0.72839 0.90224 0.86328 0.88735 0.88753 0.88328 0.87900 0.87961 0.85374 0.85442 0.85350 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.12 11.23 55.57 0.62 -18.49 16 2 C 0.07 1.68 5.24 -17.30 -0.09 1.59 16 3 Si 0.92 18.49 29.57 -169.99 -5.03 13.47 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.42 -10.82 7.78 -37.82 -0.29 -11.11 16 8 H 0.11 2.94 5.72 -52.49 -0.30 2.64 16 9 C 0.15 3.75 5.49 -106.53 -0.59 3.17 16 10 C -0.15 -3.47 8.62 -38.89 -0.34 -3.81 16 11 C -0.09 -1.91 10.01 -39.59 -0.40 -2.31 16 12 C -0.25 -4.97 10.03 -39.37 -0.39 -5.36 16 13 C -0.04 -0.77 9.60 -39.21 -0.38 -1.15 16 14 C -0.25 -5.89 5.92 -104.39 -0.62 -6.51 16 15 C 0.51 11.29 7.86 34.41 0.27 11.56 16 16 O -0.51 -12.30 13.30 -19.29 -0.26 -12.56 16 17 O -0.38 -6.81 8.91 -40.79 -0.36 -7.18 16 18 C 0.15 2.29 6.10 36.01 0.22 2.51 16 19 C 0.30 4.62 7.91 -154.81 -1.23 3.39 16 20 N -0.49 -7.95 11.27 -8.23 -0.09 -8.04 16 21 C 0.05 0.73 7.23 -84.70 -0.61 0.12 16 22 C -0.07 -0.76 10.05 -39.61 -0.40 -1.16 16 23 C -0.13 -1.21 9.96 -39.97 -0.40 -1.61 16 24 C -0.11 -0.96 10.03 -39.52 -0.40 -1.36 16 25 C -0.11 -1.14 10.07 -39.51 -0.40 -1.54 16 26 C 0.04 0.59 7.30 -83.99 -0.61 -0.02 16 27 N -0.58 -7.89 6.06 -8.00 -0.05 -7.94 16 28 H 0.43 5.11 8.54 -40.82 -0.35 4.76 16 29 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 30 H 0.12 2.88 6.68 -52.48 -0.35 2.53 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.10 1.75 7.60 -52.48 -0.40 1.35 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -28.84 342.34 -10.56 -39.40 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -3.91 Total: 9.77 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -6.64 Total: -13.59 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.48 Total: -34.47 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.62 Total: -19.74 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.84 -10.56 -39.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791643607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.000 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds