Wall clock time and date at job start Tue Mar 31 2020 12:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47120 * 240.00091 * 3 2 1 5 5 H 1.48502 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47202 * 119.99625 * 3 2 1 7 7 C 1.39935 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 197.88485 * 7 2 1 9 9 C 1.41432 * 120.00020 * 17.88548 * 7 2 1 10 10 C 1.40789 * 120.17777 * 204.44587 * 9 7 2 11 11 C 1.37711 * 120.04143 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.40995 * 359.69206 * 11 10 9 13 13 C 1.39875 * 120.36035 * 0.56355 * 12 11 10 14 14 C 1.47883 * 120.02809 * 179.74155 * 13 12 11 15 15 O 1.21550 * 120.00049 * 179.72653 * 14 13 12 16 16 N 1.34778 * 120.00012 * 359.71897 * 14 13 12 17 17 C 1.46499 * 120.00092 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46996 * 180.02562 * 17 16 14 19 19 C 1.38718 * 119.79151 * 269.98218 * 18 17 16 20 20 C 1.37915 * 120.47742 * 180.02562 * 19 18 17 21 21 C 1.38674 * 119.87164 * 359.97438 * 20 19 18 22 22 O 1.35106 * 133.94474 * 180.02562 * 21 20 19 23 23 C 1.34235 * 108.16223 * 180.02562 * 22 21 20 24 24 N 1.29907 * 110.28434 * 359.74005 * 23 22 21 25 25 C 1.36058 * 108.80156 * 0.41855 * 24 23 22 26 26 C 1.37682 * 119.78565 * 90.00293 * 18 17 16 27 27 C 1.39033 * 119.94816 * 359.46430 * 13 12 11 28 28 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.97791 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.79440 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.82017 * 180.27841 * 12 11 10 32 32 H 0.97004 * 119.99701 * 0.02562 * 16 14 13 33 33 H 1.08997 * 109.46675 * 60.00685 * 17 16 14 34 34 H 1.08995 * 109.47350 * 300.00167 * 17 16 14 35 35 H 1.08004 * 119.76383 * 0.04245 * 19 18 17 36 36 H 1.07997 * 120.06412 * 180.02562 * 20 19 18 37 37 H 1.07997 * 124.85428 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.13525 * 0.02562 * 26 18 17 39 39 H 1.08005 * 120.20565 * 180.23621 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2878 9 6 1.3520 -2.4073 -0.3751 10 6 1.8262 -3.6499 0.0867 11 6 1.1856 -4.8121 -0.2812 12 6 0.0709 -4.7686 -1.0997 13 6 -0.4116 -3.5438 -1.5726 14 6 -1.6002 -3.5062 -2.4517 15 8 -2.0219 -2.4412 -2.8583 16 7 -2.2157 -4.6528 -2.8020 17 6 -3.3936 -4.6156 -3.6724 18 6 -3.8876 -6.0195 -3.9094 19 6 -3.4020 -6.7485 -4.9850 20 6 -3.8447 -8.0342 -5.2155 21 6 -4.7816 -8.6046 -4.3670 22 8 -5.3973 -9.8064 -4.3225 23 6 -6.2249 -9.8136 -3.2657 24 7 -6.1606 -8.6794 -2.6355 25 6 -5.2756 -7.8702 -3.2783 26 6 -4.8183 -6.5700 -3.0572 27 6 0.2239 -2.3612 -1.2110 28 1 -0.4850 0.8401 -0.0004 29 1 2.6928 -3.6916 0.7299 30 1 1.5530 -5.7633 0.0750 31 1 -0.4268 -5.6856 -1.3787 32 1 -1.8793 -5.5027 -2.4773 33 1 -3.1269 -4.1582 -4.6251 34 1 -4.1795 -4.0300 -3.1954 35 1 -2.6718 -6.3063 -5.6466 36 1 -3.4619 -8.5959 -6.0547 37 1 -6.8510 -10.6451 -2.9777 38 1 -5.1938 -5.9979 -2.2217 39 1 -0.1474 -1.4129 -1.5706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:17 Heat of formation + Delta-G solvation = 20.931348 kcal Electronic energy + Delta-G solvation = -24797.025104 eV Core-core repulsion = 21056.606898 eV Total energy + Delta-G solvation = -3740.418206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.53767 -39.48113 -38.45017 -36.98023 -35.10273 -34.36518 -33.71274 -31.39534 -30.36327 -29.85400 -29.42858 -26.48813 -25.23541 -23.97435 -22.77485 -22.16469 -21.80483 -20.91882 -19.60887 -18.25366 -17.82993 -17.68525 -16.96775 -16.50704 -15.64431 -15.55482 -15.07136 -14.98217 -14.59654 -14.49478 -14.11475 -13.84824 -13.62364 -13.22763 -12.76671 -12.57930 -12.49890 -12.44485 -12.18686 -11.81726 -11.72971 -11.63816 -11.15575 -11.08159 -10.78586 -10.75459 -10.50794 -10.05508 -9.70368 -9.30804 -9.20981 -8.86009 -8.83827 -8.72076 -7.64049 -7.52686 -6.80546 -4.41855 0.38938 0.81078 2.12608 2.19673 2.26306 2.81820 3.07413 3.09096 3.16468 3.19767 3.58646 3.84544 3.88696 3.91949 4.19274 4.42080 4.62788 4.75546 4.77199 4.91598 5.00481 5.43734 5.46465 5.58950 5.60952 5.72883 5.84874 5.87949 5.95660 6.08751 6.18525 6.27148 6.28688 6.71093 6.77630 6.97935 7.01061 7.20728 7.24968 7.37353 7.69209 7.74657 7.91630 8.06526 8.17970 8.49710 8.79459 8.82752 8.91365 10.14134 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.002384 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.573999 B =11742.894600 C =12170.038296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.565 3.435 15 O -0.545 6.545 16 N -0.734 5.734 17 C 0.164 3.836 18 C -0.101 4.101 19 C -0.070 4.070 20 C -0.096 4.096 21 C 0.013 3.987 22 O -0.219 6.219 23 C 0.227 3.773 24 N -0.481 5.481 25 C 0.016 3.984 26 C -0.038 4.038 27 C -0.093 4.093 28 H 0.285 0.715 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.256 0.744 38 H 0.140 0.860 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -15.625 -8.687 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.356 3.644 15 O -0.423 6.423 16 N -0.389 5.389 17 C 0.041 3.959 18 C -0.103 4.103 19 C -0.089 4.089 20 C -0.115 4.115 21 C -0.038 4.038 22 O -0.110 6.110 23 C -0.005 4.005 24 N -0.209 5.209 25 C -0.095 4.095 26 C -0.058 4.058 27 C -0.113 4.113 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.271 0.729 38 H 0.158 0.842 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.373 -14.496 -8.435 19.720 hybrid contribution 0.622 -0.185 -0.237 0.691 sum -9.752 -14.681 -8.671 19.643 Atomic orbital electron populations 1.69784 1.07574 1.29905 1.33435 1.25969 0.94778 1.01555 0.92312 0.86321 0.80112 0.80089 0.79980 1.18712 1.20218 1.18967 1.19557 0.98224 0.91059 1.40028 0.90102 1.17598 0.91207 0.92449 0.89165 1.21102 1.03530 0.92753 1.05749 1.20433 0.96008 0.96731 0.98423 1.20335 1.01248 0.94618 1.07590 1.19441 0.96516 0.95315 1.01799 1.18864 0.83260 0.82690 0.79590 1.90704 1.66256 1.29826 1.55466 1.46016 1.30581 1.10004 1.52308 1.20067 0.88834 0.91133 0.95880 1.19845 0.97723 0.96898 0.95802 1.21042 0.98429 0.92418 0.96996 1.19864 0.96719 0.95386 0.99487 1.20376 0.99183 0.84393 0.99806 1.84532 1.47703 1.33312 1.45447 1.28290 0.92096 0.97879 0.82233 1.70624 1.18982 1.02519 1.28785 1.19807 0.98350 0.96637 0.94729 1.20298 0.95211 0.91331 0.98910 1.21642 0.96481 0.96448 0.96708 0.90355 0.88623 0.88932 0.89299 0.76382 0.90380 0.90536 0.83695 0.84429 0.72885 0.84204 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.67 10.96 55.55 0.61 -20.06 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.71 29.60 -169.99 -5.03 13.67 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.10 2.59 5.57 -106.87 -0.60 1.99 16 10 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 11 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 12 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -2.98 5.87 -105.04 -0.62 -3.59 16 14 C 0.57 12.06 7.77 -12.31 -0.10 11.96 16 15 O -0.54 -13.32 16.33 5.32 0.09 -13.24 16 16 N -0.73 -11.72 5.50 -62.42 -0.34 -12.06 16 17 C 0.16 2.15 5.79 -5.19 -0.03 2.12 16 18 C -0.10 -1.10 5.24 -104.65 -0.55 -1.65 16 19 C -0.07 -0.65 9.67 -39.52 -0.38 -1.03 16 20 C -0.10 -0.87 10.06 -39.54 -0.40 -1.27 16 21 C 0.01 0.14 7.43 -38.64 -0.29 -0.15 16 22 O -0.22 -2.09 10.77 3.63 0.04 -2.05 16 23 C 0.23 1.76 13.13 51.95 0.68 2.44 16 24 N -0.48 -5.53 11.34 -12.54 -0.14 -5.68 16 25 C 0.02 0.19 7.24 -84.71 -0.61 -0.42 16 26 C -0.04 -0.45 9.73 -39.28 -0.38 -0.83 16 27 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 28 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 29 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.09 1.55 6.38 -52.48 -0.33 1.21 16 32 H 0.40 5.74 6.48 -40.82 -0.26 5.48 16 33 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.26 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.13 3.83 5.74 -52.48 -0.30 3.53 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -32.37 344.39 -8.58 -40.95 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -3.83 Total: 9.87 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -5.16 Total: -16.59 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.12 Total: -37.80 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.13 Total: -15.29 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.37 -8.58 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.877 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds