Wall clock time and date at job start Tue Mar 31 2020 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47120 * 240.00091 * 3 2 1 5 5 H 1.48502 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47202 * 119.99625 * 3 2 1 7 7 C 1.39935 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 197.88485 * 7 2 1 9 9 C 1.41432 * 120.00020 * 17.88548 * 7 2 1 10 10 C 1.40789 * 120.17777 * 204.44587 * 9 7 2 11 11 C 1.37711 * 120.04143 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.40995 * 359.69206 * 11 10 9 13 13 C 1.39875 * 120.36035 * 0.56355 * 12 11 10 14 14 C 1.47883 * 120.02809 * 179.74155 * 13 12 11 15 15 O 1.21550 * 120.00049 * 179.72653 * 14 13 12 16 16 N 1.34778 * 120.00012 * 359.71897 * 14 13 12 17 17 C 1.46499 * 120.00092 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46996 * 180.02562 * 17 16 14 19 19 C 1.38718 * 119.79151 * 269.98218 * 18 17 16 20 20 C 1.37915 * 120.47742 * 180.02562 * 19 18 17 21 21 C 1.38674 * 119.87164 * 359.97438 * 20 19 18 22 22 O 1.35106 * 133.94474 * 180.02562 * 21 20 19 23 23 C 1.34235 * 108.16223 * 180.02562 * 22 21 20 24 24 N 1.29907 * 110.28434 * 359.74005 * 23 22 21 25 25 C 1.36058 * 108.80156 * 0.41855 * 24 23 22 26 26 C 1.37682 * 119.78565 * 90.00293 * 18 17 16 27 27 C 1.39033 * 119.94816 * 359.46430 * 13 12 11 28 28 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.97791 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.79440 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.82017 * 180.27841 * 12 11 10 32 32 H 0.97004 * 119.99701 * 0.02562 * 16 14 13 33 33 H 1.08997 * 109.46675 * 60.00685 * 17 16 14 34 34 H 1.08995 * 109.47350 * 300.00167 * 17 16 14 35 35 H 1.08004 * 119.76383 * 0.04245 * 19 18 17 36 36 H 1.07997 * 120.06412 * 180.02562 * 20 19 18 37 37 H 1.07997 * 124.85428 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.13525 * 0.02562 * 26 18 17 39 39 H 1.08005 * 120.20565 * 180.23621 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2878 9 6 1.3520 -2.4073 -0.3751 10 6 1.8262 -3.6499 0.0867 11 6 1.1856 -4.8121 -0.2812 12 6 0.0709 -4.7686 -1.0997 13 6 -0.4116 -3.5438 -1.5726 14 6 -1.6002 -3.5062 -2.4517 15 8 -2.0219 -2.4412 -2.8583 16 7 -2.2157 -4.6528 -2.8020 17 6 -3.3936 -4.6156 -3.6724 18 6 -3.8876 -6.0195 -3.9094 19 6 -3.4020 -6.7485 -4.9850 20 6 -3.8447 -8.0342 -5.2155 21 6 -4.7816 -8.6046 -4.3670 22 8 -5.3973 -9.8064 -4.3225 23 6 -6.2249 -9.8136 -3.2657 24 7 -6.1606 -8.6794 -2.6355 25 6 -5.2756 -7.8702 -3.2783 26 6 -4.8183 -6.5700 -3.0572 27 6 0.2239 -2.3612 -1.2110 28 1 -0.4850 0.8401 -0.0004 29 1 2.6928 -3.6916 0.7299 30 1 1.5530 -5.7633 0.0750 31 1 -0.4268 -5.6856 -1.3787 32 1 -1.8793 -5.5027 -2.4773 33 1 -3.1269 -4.1582 -4.6251 34 1 -4.1795 -4.0300 -3.1954 35 1 -2.6718 -6.3063 -5.6466 36 1 -3.4619 -8.5959 -6.0547 37 1 -6.8510 -10.6451 -2.9777 38 1 -5.1938 -5.9979 -2.2217 39 1 -0.1474 -1.4129 -1.5706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:16 Heat of formation + Delta-G solvation = -1.361898 kcal Electronic energy + Delta-G solvation = -24797.991812 eV Core-core repulsion = 21056.606898 eV Total energy + Delta-G solvation = -3741.384914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.25451 -40.98561 -39.51103 -38.71135 -36.02068 -35.67891 -35.43243 -32.66165 -31.59709 -31.26239 -30.92170 -27.71081 -26.99206 -24.73698 -24.12900 -23.02335 -22.91010 -22.67443 -21.25349 -19.63853 -18.85468 -18.55246 -17.99462 -17.70153 -17.18218 -16.92698 -16.54516 -16.27805 -16.07854 -15.37492 -15.32555 -15.12731 -15.05026 -14.52904 -14.36323 -14.24545 -13.72800 -13.49221 -13.42947 -13.09077 -12.93518 -12.79549 -12.59285 -12.53674 -12.51025 -12.19487 -11.90487 -11.53288 -11.50712 -11.05890 -10.87793 -10.18591 -9.84388 -9.59076 -9.46883 -9.38115 -8.66048 -6.37503 -0.31913 -0.02037 0.38417 1.01837 1.37034 1.44336 1.48629 1.51426 1.61249 2.10067 2.17347 2.20207 2.68208 2.79359 2.98615 3.43824 3.56426 3.70506 3.98448 4.03283 4.07693 4.17771 4.25459 4.41992 4.55456 4.59430 4.65991 4.80876 4.91489 4.95003 5.09315 5.11309 5.19666 5.26803 5.31683 5.36193 5.39095 5.52494 5.53580 5.86742 5.93077 6.05879 6.29039 6.49984 6.54662 6.67138 6.88390 6.95102 7.28988 8.30568 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.002384 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.573999 B =11742.894600 C =12170.038296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.137 4.137 14 C 0.563 3.437 15 O -0.585 6.585 16 N -0.710 5.710 17 C 0.166 3.834 18 C -0.098 4.098 19 C -0.069 4.069 20 C -0.086 4.086 21 C 0.000 4.000 22 O -0.221 6.221 23 C 0.251 3.749 24 N -0.527 5.527 25 C -0.006 4.006 26 C -0.054 4.054 27 C -0.131 4.131 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.411 0.589 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.307 0.693 38 H 0.131 0.869 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -18.807 -9.573 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.237 4.237 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.141 4.141 14 C 0.353 3.647 15 O -0.467 6.467 16 N -0.363 5.363 17 C 0.043 3.957 18 C -0.100 4.100 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.051 4.051 22 O -0.112 6.112 23 C 0.020 3.980 24 N -0.255 5.255 25 C -0.116 4.116 26 C -0.074 4.074 27 C -0.152 4.152 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.249 0.751 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.322 0.678 38 H 0.149 0.851 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.252 -17.740 -9.319 22.509 hybrid contribution 0.452 0.479 0.008 0.658 sum -9.800 -17.262 -9.311 21.925 Atomic orbital electron populations 1.69887 1.09243 1.30704 1.35188 1.26863 0.95415 1.04977 0.91327 0.85239 0.78704 0.75443 0.80290 1.18421 1.19690 1.17667 1.19839 0.98620 0.92203 1.41976 0.89770 1.17954 0.91836 0.93898 0.89888 1.21404 1.03955 0.92773 1.05573 1.20911 0.95382 0.97684 0.97436 1.20822 1.00475 0.95100 1.05372 1.19757 0.97002 0.95426 1.01879 1.18684 0.83112 0.83452 0.79453 1.90682 1.67304 1.31639 1.57034 1.45804 1.30434 1.08726 1.51341 1.20155 0.87319 0.92879 0.95348 1.19575 0.98080 0.95635 0.96689 1.21252 0.98559 0.92434 0.96505 1.20196 0.95527 0.95202 0.99549 1.20673 0.99758 0.84774 0.99874 1.84558 1.47907 1.32728 1.46031 1.29486 0.90368 0.97851 0.80273 1.70619 1.20405 1.04040 1.30485 1.20007 0.99013 0.96962 0.95625 1.20288 0.96097 0.91741 0.99279 1.21460 0.98269 0.96478 0.98979 0.90266 0.87387 0.84531 0.84921 0.75095 0.89642 0.91401 0.81550 0.81592 0.67807 0.85079 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.18 10.96 21.82 0.24 -45.95 16 2 C 0.03 1.53 5.14 85.25 0.44 1.97 16 3 Si 0.98 39.67 29.60 68.60 2.03 41.70 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.50 -27.12 9.05 23.47 0.21 -26.91 16 8 H 0.08 4.32 7.91 -2.91 -0.02 4.29 16 9 C 0.07 3.62 5.57 -21.32 -0.12 3.51 16 10 C -0.22 -10.18 9.78 22.77 0.22 -9.96 16 11 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 12 C -0.20 -7.78 9.55 22.70 0.22 -7.56 16 13 C -0.14 -6.47 5.87 -20.14 -0.12 -6.58 16 14 C 0.56 24.28 7.77 86.80 0.67 24.96 16 15 O -0.59 -29.81 16.33 -3.87 -0.06 -29.88 16 16 N -0.71 -21.85 5.50 -469.68 -2.58 -24.43 16 17 C 0.17 4.22 5.79 85.63 0.50 4.72 16 18 C -0.10 -2.01 5.24 -19.88 -0.10 -2.11 16 19 C -0.07 -1.10 9.67 22.31 0.22 -0.88 16 20 C -0.09 -1.31 10.06 22.30 0.22 -1.08 16 21 C 0.00 0.00 7.43 22.88 0.17 0.17 16 22 O -0.22 -3.59 10.77 -9.91 -0.11 -3.70 16 23 C 0.25 3.18 13.13 130.53 1.71 4.89 16 24 N -0.53 -11.40 11.34 -308.42 -3.50 -14.89 16 25 C -0.01 -0.14 7.24 39.32 0.28 0.15 16 26 C -0.05 -1.25 9.73 22.46 0.22 -1.03 16 27 C -0.13 -7.29 8.24 23.01 0.19 -7.10 16 28 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 29 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.13 4.01 6.38 -2.91 -0.02 3.99 16 32 H 0.41 10.74 6.48 -92.71 -0.60 10.14 16 33 H 0.09 2.10 8.08 -2.39 -0.02 2.08 16 34 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.31 -0.17 8.06 -2.91 -0.02 -0.20 16 38 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.10 6.20 5.74 -2.91 -0.02 6.18 16 Total: -1.00 -75.91 344.39 1.69 -74.22 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.51 Total: 29.39 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 5.16 Total: -26.47 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -5.84 Total: -85.27 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.17 Total: -33.58 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -75.91 1.69 -74.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.861 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds