Wall clock time and date at job start Tue Mar 31 2020 13:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46828 * 2 1 4 4 C 1.52998 * 109.47342 * 119.99903 * 2 1 3 5 5 N 1.46505 * 109.46872 * 300.00263 * 4 2 1 6 6 C 1.34779 * 119.99784 * 179.97438 * 5 4 2 7 7 O 1.21547 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.47864 * 119.99963 * 179.97438 * 6 5 4 9 9 C 1.39678 * 120.09838 * 359.73045 * 8 6 5 10 10 C 1.38040 * 120.03358 * 179.74800 * 9 8 6 11 11 C 1.38173 * 120.24739 * 0.54454 * 10 9 8 12 12 C 1.39184 * 120.19976 * 359.70398 * 11 10 9 13 13 S 1.76207 * 120.02166 * 179.97438 * 12 11 10 14 14 C 1.76203 * 100.00104 * 265.53072 * 13 12 11 15 15 H 1.08002 * 119.99556 * 5.12213 * 14 13 12 16 16 C 1.38718 * 119.99689 * 185.11777 * 14 13 12 17 17 N 1.31625 * 120.00073 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00518 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46841 * 89.99625 * 18 16 14 20 20 H 1.48494 * 109.47545 * 209.99936 * 18 16 14 21 21 H 1.48500 * 109.46913 * 330.00302 * 18 16 14 22 22 C 1.38878 * 119.95971 * 0.02562 * 12 11 10 23 23 C 1.50694 * 109.47198 * 240.00150 * 2 1 3 24 24 N 1.34779 * 120.00088 * 59.99748 * 23 2 1 25 25 O 1.21280 * 120.00062 * 239.99296 * 23 2 1 26 26 H 1.08998 * 109.47455 * 300.00097 * 1 2 3 27 27 H 1.09003 * 109.47197 * 60.00242 * 1 2 3 28 28 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47098 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47034 * 299.99858 * 3 2 1 31 31 H 1.08998 * 109.47182 * 59.99735 * 3 2 1 32 32 H 1.08991 * 109.46954 * 60.00212 * 4 2 1 33 33 H 1.08999 * 109.46843 * 180.02562 * 4 2 1 34 34 H 0.97007 * 120.00272 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.98134 * 359.97438 * 9 8 6 36 36 H 1.08000 * 119.87774 * 180.25181 * 10 9 8 37 37 H 1.08001 * 119.90239 * 179.72664 * 11 10 9 38 38 H 0.96995 * 120.00660 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.12078 * 180.02562 * 22 12 11 40 40 H 0.96997 * 120.00477 * 359.97438 * 24 23 2 41 41 H 0.97004 * 119.99993 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5516 -0.0306 2.4454 6 6 1.8768 -0.4913 3.6695 7 8 2.5757 -1.4795 3.7811 8 6 1.3844 0.2060 4.8768 9 6 0.5867 1.3457 4.7511 10 6 0.1234 1.9927 5.8790 11 6 0.4548 1.5239 7.1358 12 6 1.2533 0.3922 7.2728 13 16 1.6737 -0.2012 8.8779 14 6 3.2313 0.5923 9.0992 15 1 3.5898 1.2937 8.3603 16 6 3.9969 0.3160 10.2225 17 7 5.1607 0.9084 10.3877 18 14 3.3764 -0.8965 11.5009 19 1 3.8415 -2.2634 11.1533 20 1 3.9025 -0.5195 12.8373 21 1 1.8919 -0.8708 11.5280 22 6 1.7195 -0.2686 6.1437 23 6 2.0323 -0.7103 -1.2304 24 7 1.7067 -0.2499 -2.4546 25 8 2.7297 -1.6963 -1.1192 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6768 -1.7488 1.2492 33 1 3.1300 -0.7208 1.2494 34 1 0.9942 0.7583 2.3564 35 1 0.3293 1.7188 3.7708 36 1 -0.4966 2.8713 5.7788 37 1 0.0929 2.0370 8.0146 38 1 5.6959 0.7156 11.1733 39 1 2.3389 -1.1472 6.2470 40 1 1.1487 0.5385 -2.5436 41 1 2.0298 -0.7074 -3.2466 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079533698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:17 Heat of formation + Delta-G solvation = -92.288053 kcal Electronic energy + Delta-G solvation = -23910.421517 eV Core-core repulsion = 20300.537700 eV Total energy + Delta-G solvation = -3609.883816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64785 -40.82448 -39.21692 -37.42622 -35.12170 -34.72534 -33.87449 -32.13810 -31.89346 -28.29722 -27.93441 -27.74202 -25.20495 -24.04956 -23.46173 -21.74961 -20.48452 -20.07408 -19.19649 -18.13293 -17.78513 -17.16220 -17.11125 -16.79298 -16.66275 -16.48429 -15.91584 -15.71574 -15.14510 -15.02399 -14.96071 -14.70823 -14.68136 -14.44680 -13.91859 -13.60927 -13.28145 -13.25334 -13.13051 -13.08093 -12.85951 -12.67882 -12.29509 -12.13921 -12.00787 -11.85705 -11.28304 -11.22246 -10.97034 -10.89181 -10.69444 -10.34770 -9.92821 -9.74807 -9.14894 -8.54618 -6.28641 -0.21286 0.21213 1.05884 1.30829 1.43076 1.56499 1.64432 1.74998 1.89618 2.20947 2.59296 2.63198 2.83632 2.96659 3.37238 3.63217 3.74269 3.79827 3.92259 4.00868 4.10274 4.31996 4.44989 4.52973 4.59642 4.69814 4.73091 4.83705 4.84545 4.90485 4.91424 5.19356 5.21189 5.25680 5.29378 5.30829 5.45106 5.68157 5.83889 5.87083 6.09473 6.38128 6.44666 6.87939 7.09675 7.31213 8.59049 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.002553 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.951531 B =10965.617652 C =11480.437598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.145 4.145 4 C 0.143 3.857 5 N -0.698 5.698 6 C 0.560 3.440 7 O -0.585 6.585 8 C -0.157 4.157 9 C -0.056 4.056 10 C -0.119 4.119 11 C -0.058 4.058 12 C -0.119 4.119 13 S -0.118 6.118 14 C -0.523 4.523 15 H 0.046 0.954 16 C 0.040 3.960 17 N -0.920 5.920 18 Si 0.922 3.078 19 H -0.264 1.264 20 H -0.256 1.256 21 H -0.225 1.225 22 C -0.045 4.045 23 C 0.526 3.474 24 N -0.828 5.828 25 O -0.596 6.596 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.418 0.582 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.141 0.859 38 H 0.278 0.722 39 H 0.102 0.898 40 H 0.420 0.580 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 7.376 -26.518 32.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.202 4.202 4 C 0.019 3.981 5 N -0.353 5.353 6 C 0.348 3.652 7 O -0.465 6.465 8 C -0.162 4.162 9 C -0.075 4.075 10 C -0.138 4.138 11 C -0.078 4.078 12 C -0.230 4.230 13 S 0.116 5.884 14 C -0.670 4.670 15 H 0.064 0.936 16 C -0.165 4.165 17 N -0.558 5.558 18 Si 0.743 3.257 19 H -0.189 1.189 20 H -0.180 1.180 21 H -0.149 1.149 22 C -0.067 4.067 23 C 0.311 3.689 24 N -0.392 5.392 25 O -0.476 6.476 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.259 0.741 35 H 0.196 0.804 36 H 0.199 0.801 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.252 0.748 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -16.886 5.415 -25.363 30.947 hybrid contribution 1.405 0.310 -0.305 1.471 sum -15.480 5.725 -25.668 30.516 Atomic orbital electron populations 1.21986 0.89141 1.03366 1.05550 1.20920 0.99741 0.97674 0.90519 1.21994 1.01413 0.91278 1.05527 1.21002 0.98440 0.95595 0.83061 1.45561 1.53635 1.32343 1.03744 1.18473 0.79276 0.83218 0.84230 1.90783 1.39816 1.28488 1.87448 1.19896 1.04673 1.00021 0.91610 1.21773 0.92975 0.91468 1.01266 1.21597 1.00637 1.01320 0.90222 1.22112 0.93431 0.92202 1.00092 1.22069 1.03346 1.00729 0.96873 1.82627 1.24823 1.66408 1.14519 1.22376 1.04417 1.29075 1.11094 0.93552 1.25737 0.93932 0.97396 0.99467 1.70029 1.12258 1.43601 1.29871 0.85771 0.81930 0.79178 0.78869 1.18926 1.18046 1.14871 1.21636 0.95326 0.97925 0.91811 1.20581 0.78690 0.83222 0.86439 1.43614 1.54912 1.33890 1.06757 1.90794 1.40262 1.28902 1.87656 0.89439 0.88154 0.92900 0.93258 0.88082 0.89540 0.92884 0.93415 0.74131 0.80352 0.80067 0.84117 0.91263 0.87963 0.74766 0.75943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.20 71.98 0.59 -0.16 16 2 C -0.08 -0.99 0.63 -52.93 -0.03 -1.02 16 3 C -0.14 -0.92 8.20 71.98 0.59 -0.33 16 4 C 0.14 3.22 3.85 86.38 0.33 3.56 16 5 N -0.70 -14.28 4.91 -465.96 -2.29 -16.57 16 6 C 0.56 18.13 7.77 86.79 0.67 18.80 16 7 O -0.58 -25.60 16.34 -3.86 -0.06 -25.67 16 8 C -0.16 -5.00 5.87 -20.11 -0.12 -5.12 16 9 C -0.06 -1.16 9.54 22.57 0.22 -0.94 16 10 C -0.12 -2.54 10.02 22.21 0.22 -2.32 16 11 C -0.06 -1.86 9.79 22.48 0.22 -1.64 16 12 C -0.12 -5.06 5.45 22.65 0.12 -4.94 16 13 S -0.12 -5.93 19.38 -56.49 -1.09 -7.02 16 14 C -0.52 -31.76 10.01 67.93 0.68 -31.08 16 15 H 0.05 3.11 8.02 -2.91 -0.02 3.09 16 16 C 0.04 2.38 5.50 84.84 0.47 2.85 16 17 N -0.92 -57.86 13.97 21.63 0.30 -57.55 16 18 Si 0.92 44.74 27.74 68.60 1.90 46.64 16 19 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.23 -10.34 6.74 99.48 0.67 -9.67 16 22 C -0.05 -1.89 9.34 22.70 0.21 -1.68 16 23 C 0.53 8.35 6.75 87.65 0.59 8.95 16 24 N -0.83 -4.63 8.66 -173.54 -1.50 -6.13 16 25 O -0.60 -16.88 16.82 -3.03 -0.05 -16.93 16 26 H 0.09 0.21 6.86 -2.39 -0.02 0.19 16 27 H 0.10 -0.13 7.56 -2.39 -0.02 -0.15 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 -0.04 7.57 -2.39 -0.02 -0.06 16 31 H 0.09 0.32 6.86 -2.39 -0.02 0.30 16 32 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.42 4.52 4.19 -92.70 -0.39 4.13 16 35 H 0.18 1.47 6.40 -2.91 -0.02 1.45 16 36 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.10 4.96 7.65 -2.91 -0.02 4.94 16 40 H 0.42 -0.92 7.67 -92.71 -0.71 -1.63 16 41 H 0.41 1.96 8.93 -92.71 -0.83 1.14 16 Total: -1.00 -93.25 358.29 1.10 -92.15 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -0.87 Total: 6.16 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.77 Total: -15.08 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.49 Total: -80.26 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.11 Total: -42.59 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -1.09 Total: -7.02 kcal Total: -93.25 1.10 -92.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079533698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.141 kcal (2) G-P(sol) polarization free energy of solvation -93.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds