Wall clock time and date at job start Tue Mar 31 2020 13:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46967 * 2 1 4 4 C 1.53001 * 109.47138 * 240.00249 * 2 1 3 5 5 C 1.53001 * 109.47038 * 120.00057 * 2 1 3 6 6 H 1.09002 * 109.47041 * 180.02562 * 5 2 1 7 7 C 1.47205 * 109.47164 * 299.99866 * 5 2 1 8 8 N 3.43556 * 83.99584 * 81.44642 * 2 1 3 9 9 N 1.46496 * 109.47259 * 60.00173 * 5 2 1 10 10 S 1.65599 * 120.00252 * 144.99808 * 9 5 2 11 11 O 1.42100 * 106.40111 * 178.53806 * 10 9 5 12 12 O 1.42096 * 106.40055 * 311.46370 * 10 9 5 13 13 C 1.76202 * 107.21476 * 65.00045 * 10 9 5 14 14 C 1.38636 * 119.74890 * 269.72553 * 13 10 9 15 15 C 1.37617 * 120.24555 * 179.72346 * 14 13 10 16 16 C 1.40712 * 119.74664 * 0.57175 * 15 14 13 17 17 C 1.41396 * 120.24566 * 179.68137 * 16 15 14 18 18 H 1.08003 * 119.99926 * 155.31123 * 17 16 15 19 19 C 1.39948 * 119.99945 * 335.31033 * 17 16 15 20 20 N 1.30819 * 119.99969 * 342.23285 * 19 17 16 21 21 Si 1.86796 * 119.99964 * 162.23179 * 19 17 16 22 22 H 1.48503 * 109.47210 * 94.66257 * 21 19 17 23 23 H 1.48501 * 109.47236 * 214.66452 * 21 19 17 24 24 H 1.48507 * 109.47220 * 334.66605 * 21 19 17 25 25 C 1.40723 * 119.51260 * 359.70595 * 16 15 14 26 26 C 1.37618 * 119.73931 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46957 * 299.99951 * 1 2 3 28 28 H 1.08997 * 109.46873 * 59.99725 * 1 2 3 29 29 H 1.08995 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46889 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47548 * 299.99861 * 3 2 1 32 32 H 1.09003 * 109.47242 * 60.00223 * 3 2 1 33 33 H 1.09002 * 109.46717 * 299.99619 * 4 2 1 34 34 H 1.08997 * 109.47218 * 60.00237 * 4 2 1 35 35 H 1.09005 * 109.46830 * 180.02562 * 4 2 1 36 36 H 0.97003 * 119.99364 * 324.99870 * 9 5 2 37 37 H 1.07997 * 119.87256 * 359.97438 * 14 13 10 38 38 H 1.08005 * 120.12530 * 180.27998 * 15 14 13 39 39 H 0.96997 * 120.00002 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.12818 * 179.97438 * 25 16 15 41 41 H 1.08007 * 119.86730 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2495 7 6 1.5493 -0.0273 2.4512 8 7 1.1706 0.5082 3.3787 9 7 1.5517 -2.1025 1.2492 10 16 2.5011 -3.3164 1.8553 11 8 1.7417 -4.5124 1.7457 12 8 3.7843 -3.1538 1.2671 13 6 2.7015 -3.0105 3.5789 14 6 3.7667 -2.2415 4.0218 15 6 3.9298 -1.9915 5.3652 16 6 3.0173 -2.5296 6.2914 17 6 3.1786 -2.2849 7.6746 18 1 2.3251 -2.3325 8.3346 19 6 4.4444 -1.9811 8.1885 20 7 5.5166 -2.2559 7.4912 21 14 4.6029 -1.1831 9.8700 22 1 4.8203 -2.2329 10.8976 23 1 5.7557 -0.2470 9.8670 24 1 3.3585 -0.4351 10.1822 25 6 1.9431 -3.3134 5.8309 26 6 1.7959 -3.5450 4.4823 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 0.6722 -2.3059 0.8942 37 1 4.4687 -1.8339 3.3096 38 1 4.7577 -1.3884 5.7078 39 1 6.3939 -2.0450 7.8472 40 1 1.2371 -3.7317 6.5330 41 1 0.9725 -4.1467 4.1266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121804201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:56 Heat of formation + Delta-G solvation = -67.079366 kcal Electronic energy + Delta-G solvation = -25461.034171 eV Core-core repulsion = 21852.243485 eV Total energy + Delta-G solvation = -3608.790686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10643 -39.40050 -38.14552 -36.85163 -36.76057 -35.84057 -34.48196 -32.10482 -31.32429 -28.55853 -28.11248 -27.65697 -27.50985 -23.34958 -22.99790 -20.90923 -20.43229 -19.46851 -19.29439 -18.72330 -18.10321 -17.26361 -17.03311 -16.22897 -15.88136 -15.73482 -15.23696 -15.00890 -14.84866 -14.63713 -14.30639 -14.16083 -14.01443 -13.74121 -13.58434 -13.38183 -13.16573 -13.11818 -13.03989 -12.99425 -12.90379 -12.82949 -12.76162 -12.61057 -12.44722 -12.08097 -11.86459 -11.67606 -11.59730 -11.57791 -11.48586 -11.24121 -10.83958 -9.81503 -9.57554 -8.91265 -6.69034 -0.42090 0.45735 1.03042 1.30455 1.36503 1.47315 1.56808 1.78333 2.07317 2.30885 2.50155 2.79144 2.96506 3.45522 3.50315 3.64737 3.80897 4.01723 4.20773 4.26168 4.30283 4.44923 4.61928 4.82076 4.86133 4.90230 4.92773 4.98912 5.05874 5.10690 5.14904 5.19564 5.21138 5.37816 5.47612 5.48817 5.56558 5.58924 5.71346 5.89086 6.01979 6.12899 6.45546 6.55315 6.64800 6.77845 8.04297 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.004110 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.533983 B = 6811.347475 C = 7559.609973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.056 4.056 3 C -0.149 4.149 4 C -0.144 4.144 5 C 0.254 3.746 6 H 0.140 0.860 7 C 0.208 3.792 8 N -0.457 5.457 9 N -1.093 6.093 10 S 2.725 3.275 11 O -0.992 6.992 12 O -0.983 6.983 13 C -0.801 4.801 14 C -0.018 4.018 15 C -0.205 4.205 16 C 0.113 3.887 17 C -0.471 4.471 18 H 0.087 0.913 19 C 0.036 3.964 20 N -0.796 5.796 21 Si 0.989 3.011 22 H -0.256 1.256 23 H -0.260 1.260 24 H -0.259 1.259 25 C -0.261 4.261 26 C -0.001 4.001 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.431 0.569 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.299 0.701 40 H 0.105 0.895 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 6.156 -14.709 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.059 4.059 3 C -0.207 4.207 4 C -0.201 4.201 5 C 0.142 3.858 6 H 0.158 0.842 7 C -0.113 4.113 8 N -0.134 5.134 9 N -0.853 5.853 10 S 2.820 3.180 11 O -0.982 6.982 12 O -0.973 6.973 13 C -0.893 4.893 14 C -0.038 4.038 15 C -0.226 4.226 16 C 0.110 3.890 17 C -0.498 4.498 18 H 0.105 0.895 19 C -0.184 4.184 20 N -0.419 5.419 21 Si 0.808 3.192 22 H -0.180 1.180 23 H -0.184 1.184 24 H -0.182 1.182 25 C -0.281 4.281 26 C -0.020 4.020 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.271 0.729 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.635 6.254 -13.768 15.816 hybrid contribution -0.109 0.138 1.568 1.577 sum -4.744 6.392 -12.200 14.567 Atomic orbital electron populations 1.22009 0.93090 1.02993 1.02735 1.20794 0.97178 0.95971 0.91936 1.21983 1.02369 0.93542 1.02796 1.21930 1.02111 1.00677 0.95425 1.18696 1.00546 0.79642 0.86889 0.84222 1.30153 0.93023 0.93540 0.94547 1.81204 1.09961 1.10663 1.11550 1.55550 1.34026 1.18014 1.77749 1.00497 0.72549 0.72010 0.72954 1.93491 1.72408 1.44785 1.87522 1.93495 1.40741 1.86285 1.76732 1.29723 1.10577 1.25830 1.23163 1.20459 0.93849 0.93660 0.95825 1.21321 1.02861 1.05703 0.92676 1.18187 0.90433 0.86312 0.94074 1.20214 0.95650 1.40212 0.93738 0.89514 1.26979 0.94256 0.92735 1.04391 1.69843 1.00397 1.31756 1.39889 0.85086 0.79533 0.78926 0.75680 1.18007 1.18401 1.18217 1.21244 1.03771 1.07488 0.95613 1.20438 0.95173 0.93380 0.93047 0.94178 0.89392 0.91210 0.90958 0.89231 0.94102 0.91792 0.89559 0.91538 0.72949 0.86068 0.87471 0.88982 0.87668 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.03 71.98 0.58 -1.52 16 2 C -0.06 -0.85 0.61 -52.18 -0.03 -0.89 16 3 C -0.15 -2.08 8.22 71.98 0.59 -1.49 16 4 C -0.14 -1.75 8.32 71.98 0.60 -1.15 16 5 C 0.25 5.76 2.05 43.19 0.09 5.85 16 6 H 0.14 3.02 7.50 -2.39 -0.02 3.01 16 7 C 0.21 6.26 12.39 89.44 1.11 7.37 16 8 N -0.46 -16.94 18.54 20.01 0.37 -16.57 16 9 N -1.09 -26.08 4.63 -177.02 -0.82 -26.90 16 10 S 2.73 91.89 5.71 -56.49 -0.32 91.56 16 11 O -0.99 -37.22 17.26 -128.00 -2.21 -39.43 16 12 O -0.98 -35.66 16.59 -128.00 -2.12 -37.79 16 13 C -0.80 -34.09 5.92 22.46 0.13 -33.96 16 14 C -0.02 -0.83 9.49 22.22 0.21 -0.62 16 15 C -0.21 -10.74 8.70 22.73 0.20 -10.54 16 16 C 0.11 6.11 5.57 -21.29 -0.12 5.99 16 17 C -0.47 -24.73 9.05 23.46 0.21 -24.52 16 18 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 19 C 0.04 1.73 5.14 85.26 0.44 2.17 16 20 N -0.80 -39.71 10.97 21.83 0.24 -39.47 16 21 Si 0.99 36.17 29.59 68.60 2.03 38.20 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 23 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 24 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 25 C -0.26 -13.00 9.80 22.73 0.22 -12.78 16 26 C 0.00 -0.03 9.49 22.22 0.21 0.18 16 27 H 0.04 0.71 7.23 -2.39 -0.02 0.70 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.84 6.50 -2.39 -0.02 0.83 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.72 7.23 -2.39 -0.02 0.70 16 33 H 0.06 0.79 7.60 -2.39 -0.02 0.77 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.43 7.76 7.03 -96.74 -0.68 7.08 16 37 H 0.12 4.94 7.59 -2.91 -0.02 4.92 16 38 H 0.11 5.77 6.18 -2.91 -0.02 5.76 16 39 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 40 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.13 4.95 7.60 -2.91 -0.02 4.93 16 Total: -1.00 -69.02 356.82 1.99 -67.03 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.38 Total: 29.24 kcal Atomic # 6 Polarization: -70.34 SS G_CDS: 4.44 Total: -65.90 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -0.21 Total: -82.93 kcal Atomic # 8 Polarization: -72.88 SS G_CDS: -4.33 Total: -77.21 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Atomic # 16 Polarization: 91.89 SS G_CDS: -0.32 Total: 91.56 kcal Total: -69.02 1.99 -67.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121804201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.044 kcal (2) G-P(sol) polarization free energy of solvation -69.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds