Wall clock time and date at job start Tue Mar 31 2020 13:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 C 1.53008 * 109.46937 * 239.99883 * 2 1 3 5 5 C 1.50698 * 109.46952 * 60.00161 * 4 2 1 6 6 H 1.08006 * 120.00029 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99994 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00082 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47137 * 120.00311 * 9 7 5 12 12 H 1.48504 * 109.47065 * 240.00155 * 9 7 5 13 13 C 1.52995 * 109.47193 * 120.00118 * 2 1 3 14 14 N 1.46905 * 109.47210 * 299.99980 * 13 2 1 15 15 C 1.46905 * 110.99859 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.46558 * 179.97438 * 15 14 13 17 17 N 1.29020 * 124.91669 * 90.00431 * 16 15 14 18 18 C 1.31785 * 117.12283 * 179.97438 * 17 16 15 19 19 C 1.50703 * 122.74868 * 179.97438 * 18 17 16 20 20 F 1.39905 * 109.47157 * 5.02384 * 19 18 17 21 21 F 1.39900 * 109.47159 * 245.02684 * 19 18 17 22 22 F 1.39897 * 109.47274 * 125.02376 * 19 18 17 23 23 C 1.33634 * 114.50259 * 0.23300 * 18 17 16 24 24 S 1.70979 * 124.91332 * 269.99620 * 16 15 14 25 25 H 1.09003 * 109.47084 * 299.99811 * 1 2 3 26 26 H 1.09000 * 109.46967 * 59.99615 * 1 2 3 27 27 H 1.08993 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47048 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46920 * 300.00085 * 3 2 1 30 30 H 1.09003 * 109.46917 * 60.00087 * 3 2 1 31 31 H 1.09001 * 109.46569 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.46703 * 299.99847 * 4 2 1 33 33 H 0.96997 * 120.00250 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47489 * 179.97438 * 13 2 1 35 35 H 1.09005 * 109.47404 * 59.99446 * 13 2 1 36 36 H 1.00897 * 110.99627 * 56.04350 * 14 13 2 37 37 H 1.08995 * 109.46693 * 60.00095 * 15 14 13 38 38 H 1.08996 * 109.46879 * 299.99540 * 15 14 13 39 39 H 1.08001 * 126.03876 * 179.77577 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2491 0.3994 -5.2572 10 1 0.4235 1.5657 -4.8530 11 1 2.4044 0.8662 -6.0650 12 1 0.4242 -0.5337 -6.0660 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0210 -0.6953 3.6703 16 6 1.5003 0.0421 4.8771 17 7 0.3810 -0.2068 5.4685 18 6 0.0762 0.5348 6.5144 19 6 -1.1980 0.3538 7.2986 20 9 -1.8921 -0.7584 6.8103 21 9 -1.9943 1.4962 7.1645 22 9 -0.8904 0.1556 8.6488 23 6 0.9869 1.4639 6.8193 24 16 2.3077 1.3294 5.6608 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 2.8621 -1.8819 -4.7337 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7489 1.2493 36 1 0.5439 0.0413 2.4401 37 1 3.1108 -0.6955 3.6872 38 1 1.6570 -1.7226 3.6868 39 1 0.9251 2.1713 7.6331 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174422075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:41 Heat of formation + Delta-G solvation = -117.299660 kcal Electronic energy + Delta-G solvation = -24508.466849 eV Core-core repulsion = 20355.641708 eV Total energy + Delta-G solvation = -4152.825141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.43563 -47.98578 -47.87125 -40.33887 -37.77672 -34.84070 -32.44077 -31.37567 -27.90499 -27.26552 -26.75347 -26.36708 -24.81618 -23.04386 -22.13966 -20.44293 -19.53048 -18.84509 -18.52301 -17.93569 -17.06180 -16.28531 -15.73726 -15.50372 -15.33202 -14.85655 -14.66280 -14.53827 -14.35286 -14.06790 -14.03632 -13.96406 -13.92952 -13.41406 -13.12678 -12.92048 -12.59505 -12.28140 -12.01015 -11.88637 -11.78080 -11.02623 -10.92090 -10.77699 -10.53267 -10.34453 -10.20809 -10.11595 -9.96929 -9.73130 -9.58447 -9.06324 -8.86350 -8.34191 -8.33286 -5.98194 -3.98259 0.06726 0.75163 1.14901 1.94592 2.26273 3.20469 3.31533 3.39636 3.43010 3.69436 4.00196 4.05772 4.42045 4.50655 4.63639 4.68411 4.99991 5.30924 5.37954 5.44886 5.60069 5.69763 5.92768 6.16609 6.25259 6.44928 6.60755 6.72570 6.79358 7.02612 7.05889 7.16783 7.21076 7.27866 7.46030 7.67590 7.81711 8.01955 8.45992 9.07236 9.64869 11.13505 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.002415 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.674586 B =11589.060285 C =11988.917173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.681 5.681 15 C 0.129 3.871 16 C 0.064 3.936 17 N -0.447 5.447 18 C -0.021 4.021 19 C 0.546 3.454 20 F -0.161 7.161 21 F -0.171 7.171 22 F -0.172 7.172 23 C -0.219 4.219 24 S 0.219 5.781 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.258 0.742 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.347 0.653 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 5.244 24.759 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.315 5.315 15 C -0.004 4.004 16 C -0.215 4.215 17 N -0.161 5.161 18 C -0.157 4.157 19 C 0.489 3.511 20 F -0.143 7.143 21 F -0.152 7.152 22 F -0.154 7.154 23 C -0.361 4.361 24 S 0.476 5.524 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.569 5.676 24.252 24.914 hybrid contribution -1.885 -0.551 -0.291 1.985 sum -2.454 5.125 23.961 24.626 Atomic orbital electron populations 1.21782 0.95957 1.00540 1.00476 1.20643 0.94836 0.96158 0.94188 1.21610 0.99794 0.95745 1.00244 1.19129 0.96137 0.95027 0.90073 1.21264 1.30753 1.11897 0.90568 0.92225 1.25011 0.95394 0.95110 0.99076 1.69969 1.37315 1.23227 1.23219 0.86611 0.78615 0.79743 0.83488 1.19768 1.21149 1.21187 1.22180 1.00007 0.95044 0.88601 1.60703 1.17439 1.53118 1.00255 1.20555 1.00266 0.94977 0.84551 1.27122 0.93239 0.99422 1.01670 1.65858 1.16568 1.26720 1.06958 1.19879 0.97912 0.99101 0.98789 1.17252 0.82514 0.74431 0.76946 1.93246 1.80581 1.52895 1.87531 1.93241 1.75531 1.50772 1.95641 1.93223 1.93086 1.94898 1.34160 1.27006 0.98517 1.04312 1.06275 1.84234 1.19689 1.29781 1.18675 0.94889 0.91594 0.93943 0.94063 0.92577 0.93991 0.96598 0.96822 0.93200 0.91073 0.95172 0.83328 0.88410 0.91646 0.79387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 2 C -0.06 -1.10 0.60 -154.50 -0.09 -1.19 16 3 C -0.12 -2.15 8.06 37.16 0.30 -1.85 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.07 1.10 4.65 -3.82 -0.02 1.09 16 14 N -0.68 -9.06 5.70 -115.05 -0.66 -9.71 16 15 C 0.13 1.41 6.26 -4.97 -0.03 1.38 16 16 C 0.06 0.70 6.90 -13.46 -0.09 0.60 16 17 N -0.45 -5.54 10.14 -8.06 -0.08 -5.62 16 18 C -0.02 -0.23 6.16 -84.22 -0.52 -0.75 16 19 C 0.55 5.83 3.39 36.01 0.12 5.95 16 20 F -0.16 -1.99 17.01 2.25 0.04 -1.95 16 21 F -0.17 -1.80 17.30 2.25 0.04 -1.76 16 22 F -0.17 -1.69 17.22 2.25 0.04 -1.65 16 23 C -0.22 -1.81 11.05 29.12 0.32 -1.49 16 24 S 0.22 1.79 23.18 -107.50 -2.49 -0.70 16 25 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 26 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.12 6.62 -51.93 -0.34 0.78 16 30 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.35 4.82 6.76 -39.29 -0.27 4.56 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -29.62 348.16 -7.27 -36.89 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.93 Total: -1.32 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.19 Total: -10.05 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.00 Total: -41.07 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.12 Total: -5.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.62 -7.27 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174422075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.408 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds