Wall clock time and date at job start Tue Mar 31 2020 13:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46943 * 2 1 4 4 C 1.50698 * 109.47212 * 119.99751 * 2 1 3 5 5 O 1.20826 * 120.00069 * 233.76014 * 4 2 1 6 6 O 1.34236 * 119.99895 * 53.76081 * 4 2 1 7 7 C 1.45197 * 116.99639 * 184.86143 * 6 4 2 8 8 C 1.53008 * 109.46788 * 184.49835 * 7 6 4 9 9 C 1.50693 * 115.55043 * 295.68420 * 8 7 6 10 10 H 1.08009 * 119.99730 * 98.45029 * 9 8 7 11 11 C 1.37878 * 120.00424 * 278.17249 * 9 8 7 12 12 N 1.31518 * 119.99469 * 355.48518 * 11 9 8 13 13 Si 1.86794 * 120.00344 * 175.48459 * 11 9 8 14 14 H 1.48504 * 109.47122 * 60.00094 * 13 11 9 15 15 H 1.48499 * 109.46946 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47150 * 299.99909 * 13 11 9 17 17 C 1.52996 * 117.51447 * 81.38653 * 8 7 6 18 18 C 1.52999 * 60.00074 * 107.47741 * 17 8 7 19 19 C 1.50698 * 109.47127 * 240.00073 * 2 1 3 20 20 C 1.38241 * 119.98825 * 233.76066 * 19 2 1 21 21 C 1.38212 * 120.01754 * 179.72728 * 20 19 2 22 22 C 1.38352 * 119.98448 * 0.53767 * 21 20 19 23 23 Cl 1.73597 * 120.01610 * 179.70559 * 22 21 20 24 24 C 1.38362 * 119.97179 * 359.73241 * 22 21 20 25 25 C 1.38207 * 119.98703 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.46835 * 300.00179 * 1 2 3 27 27 H 1.09003 * 109.47270 * 59.99988 * 1 2 3 28 28 H 1.09008 * 109.46802 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47197 * 184.83811 * 3 2 1 30 30 H 1.09005 * 109.47273 * 304.83446 * 3 2 1 31 31 H 1.08992 * 109.47478 * 64.83273 * 3 2 1 32 32 H 1.08999 * 109.46873 * 64.50650 * 7 6 4 33 33 H 1.09000 * 109.47435 * 304.49971 * 7 6 4 34 34 H 0.96996 * 119.99487 * 185.00620 * 12 11 9 35 35 H 1.09001 * 117.49855 * 214.97198 * 17 8 7 36 36 H 1.09001 * 117.49943 * 359.97438 * 17 8 7 37 37 H 1.09000 * 117.50229 * 252.50750 * 18 17 8 38 38 H 1.09004 * 117.51426 * 107.47987 * 18 17 8 39 39 H 1.08001 * 119.99077 * 359.97438 * 20 19 2 40 40 H 1.07998 * 120.00953 * 180.26648 * 21 20 19 41 41 H 1.07999 * 120.00570 * 179.97438 * 24 22 21 42 42 H 1.07998 * 119.99852 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.8170 -0.1611 1.9671 6 8 1.6082 -1.9533 1.5081 7 6 2.0479 -2.5347 2.7638 8 6 1.5616 -3.9827 2.8533 9 6 0.0664 -4.1643 2.9009 10 1 -0.4760 -4.4149 2.0011 11 6 -0.6085 -4.0163 4.0940 12 7 0.0608 -3.8045 5.2061 13 14 -2.4734 -4.1165 4.1309 14 1 -2.9075 -5.4476 3.6360 15 1 -2.9519 -3.9255 5.5236 16 1 -3.0434 -3.0554 3.2623 17 6 2.3801 -5.0496 2.1235 18 6 2.4187 -4.9676 3.6509 19 6 2.0324 -0.7104 -1.2305 20 6 2.9301 -1.7545 -1.1074 21 6 3.3868 -2.4101 -2.2352 22 6 2.9540 -2.0140 -3.4881 23 17 3.5331 -2.8320 -4.9056 24 6 2.0599 -0.9653 -3.6110 25 6 1.5992 -0.3145 -2.4822 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 3.1266 1.4438 -0.0867 30 1 1.6077 1.9808 -0.8435 31 1 1.7491 1.9307 0.9300 32 1 1.6356 -1.9610 3.5939 33 1 3.1366 -2.5134 2.8126 34 1 -0.4072 -3.7728 6.0552 35 1 1.8371 -5.8830 1.6778 36 1 3.2650 -4.7200 1.5791 37 1 3.3292 -4.5843 4.1115 38 1 1.9011 -5.7470 4.2102 39 1 3.2714 -2.0605 -0.1296 40 1 4.0848 -3.2286 -2.1386 41 1 1.7220 -0.6554 -4.5889 42 1 0.9016 0.5044 -2.5779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174753500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:42 Heat of formation + Delta-G solvation = -66.015567 kcal Electronic energy + Delta-G solvation = -25317.777884 eV Core-core repulsion = 21674.696870 eV Total energy + Delta-G solvation = -3643.081013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04695 -40.26166 -38.70376 -37.62288 -37.03655 -36.11345 -34.02849 -32.13592 -30.64628 -29.00017 -28.14539 -27.36907 -25.39017 -23.78580 -23.14710 -22.87872 -21.21652 -20.57692 -18.96104 -18.44034 -18.02555 -17.26458 -17.16694 -16.60369 -16.25291 -15.91629 -15.53664 -15.22570 -14.86371 -14.78015 -14.47625 -14.17856 -13.96426 -13.77854 -13.59354 -13.51856 -13.15616 -13.02195 -12.88576 -12.81968 -12.57403 -12.48392 -12.41103 -12.11529 -12.07047 -11.96260 -11.81199 -11.66858 -11.58577 -11.23341 -10.88578 -10.47973 -10.10323 -10.02851 -9.59206 -8.12355 -6.24903 0.08564 0.30028 1.13747 1.13983 1.42091 1.43452 1.50801 1.75357 2.41929 2.58516 3.14887 3.32234 3.43551 3.56069 3.84320 3.89720 3.96619 4.01372 4.09644 4.32259 4.34365 4.40909 4.43431 4.62131 4.63860 4.69453 4.76678 4.79822 4.83483 4.92029 4.93207 4.94622 5.13118 5.15662 5.22955 5.24575 5.31098 5.39596 5.45832 5.56217 5.66542 5.75224 5.77864 6.34734 6.76945 6.79591 7.43472 8.95162 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.003907 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.793587 B = 7164.148436 C = 7759.998755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.009 4.009 3 C -0.125 4.125 4 C 0.457 3.543 5 O -0.545 6.545 6 O -0.337 6.337 7 C 0.128 3.872 8 C 0.008 3.992 9 C -0.499 4.499 10 H 0.054 0.946 11 C 0.024 3.976 12 N -0.911 5.911 13 Si 0.949 3.051 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.270 1.270 17 C -0.179 4.179 18 C -0.145 4.145 19 C -0.071 4.071 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.043 4.043 23 Cl -0.069 7.069 24 C -0.102 4.102 25 C -0.085 4.085 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 8.746 -18.530 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.010 4.010 3 C -0.182 4.182 4 C 0.301 3.699 5 O -0.436 6.436 6 O -0.252 6.252 7 C 0.054 3.946 8 C 0.007 3.993 9 C -0.537 4.537 10 H 0.072 0.928 11 C -0.176 4.176 12 N -0.548 5.548 13 Si 0.775 3.225 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.216 4.216 18 C -0.182 4.182 19 C -0.071 4.071 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.069 4.069 23 Cl -0.040 7.040 24 C -0.121 4.121 25 C -0.103 4.103 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.190 8.872 -18.221 20.516 hybrid contribution -0.407 -0.598 1.115 1.329 sum 2.783 8.273 -17.106 19.205 Atomic orbital electron populations 1.21975 0.89415 1.03653 1.04658 1.19673 0.99075 0.95893 0.86377 1.21819 1.01695 0.90465 1.04197 1.24372 0.77743 0.80255 0.87519 1.90591 1.34246 1.67181 1.51607 1.86600 1.68598 1.29357 1.40675 1.22474 0.95684 0.94902 0.81518 1.18846 0.93225 0.85654 1.01527 1.20554 0.90607 1.48061 0.94474 0.92796 1.25690 1.02289 0.94254 0.95340 1.70081 1.37153 1.49456 0.98135 0.85745 0.80784 0.78981 0.77014 1.19481 1.21086 1.19512 1.22959 1.01843 1.02640 0.94124 1.22454 1.00055 1.02836 0.92883 1.19577 0.97149 0.96046 0.94361 1.21050 0.97947 0.96316 0.98135 1.21055 1.00851 1.00509 0.90580 1.21068 1.00517 0.97640 0.87687 1.98366 1.87961 1.78578 1.39117 1.21345 0.95808 0.94058 1.00845 1.21169 0.99497 1.00427 0.89202 0.92008 0.86826 0.92438 0.92559 0.87062 0.92073 0.94298 0.93735 0.92991 0.89766 0.89466 0.90707 0.91071 0.87909 0.84518 0.81860 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.10 71.98 0.58 -2.69 16 2 C -0.01 -0.24 0.80 -53.67 -0.04 -0.28 16 3 C -0.12 -2.66 7.59 71.98 0.55 -2.11 16 4 C 0.46 17.28 4.95 71.24 0.35 17.63 16 5 O -0.55 -23.31 15.66 21.96 0.34 -22.96 16 6 O -0.34 -14.62 8.87 -51.48 -0.46 -15.08 16 7 C 0.13 6.15 5.38 71.98 0.39 6.54 16 8 C 0.01 0.39 1.64 -52.93 -0.09 0.31 16 9 C -0.50 -27.12 8.74 25.60 0.22 -26.90 16 10 H 0.05 2.94 7.82 -2.91 -0.02 2.91 16 11 C 0.02 1.33 5.44 84.65 0.46 1.79 16 12 N -0.91 -51.75 12.81 21.45 0.27 -51.47 16 13 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C -0.18 -7.62 9.96 30.59 0.30 -7.32 16 18 C -0.14 -6.75 9.34 30.59 0.29 -6.46 16 19 C -0.07 -1.73 4.75 -19.86 -0.09 -1.83 16 20 C -0.12 -3.30 8.92 22.26 0.20 -3.10 16 21 C -0.11 -2.75 9.83 22.29 0.22 -2.53 16 22 C -0.04 -0.89 6.32 22.33 0.14 -0.75 16 23 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 24 C -0.10 -1.72 9.83 22.29 0.22 -1.50 16 25 C -0.09 -1.45 8.84 22.26 0.20 -1.25 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.11 1.61 7.08 -2.39 -0.02 1.60 16 28 H 0.06 1.62 8.01 -2.38 -0.02 1.60 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.11 1.42 7.95 -2.38 -0.02 1.40 16 31 H 0.06 1.41 8.05 -2.39 -0.02 1.40 16 32 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 2.04 7.94 -2.39 -0.02 2.02 16 34 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 35 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.07 3.26 8.14 -2.39 -0.02 3.25 16 38 H 0.07 3.54 8.14 -2.38 -0.02 3.53 16 39 H 0.10 3.45 6.00 -2.91 -0.02 3.44 16 40 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.17 1.61 7.17 -2.91 -0.02 1.59 16 Total: -1.00 -65.07 369.01 7.02 -58.06 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.01 Total: 18.41 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.89 Total: -30.46 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.27 Total: -51.47 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.11 Total: -38.04 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -65.07 7.02 -58.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174753500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.958 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds