Wall clock time and date at job start Tue Mar 31 2020 13:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 C 1.50695 * 109.46953 * 239.99533 * 2 1 3 5 5 O 1.21286 * 120.00369 * 245.52458 * 4 2 1 6 6 N 1.34777 * 120.00250 * 65.52925 * 4 2 1 7 7 N 1.40096 * 120.00342 * 179.97438 * 6 4 2 8 8 C 1.34775 * 119.99926 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00107 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99710 * 180.02562 * 8 7 6 11 11 S 1.81002 * 109.46995 * 179.97438 * 10 8 7 12 12 C 1.76198 * 100.00236 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00190 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99918 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99840 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47231 * 90.00327 * 16 14 12 18 18 H 1.48503 * 109.46735 * 210.00027 * 16 14 12 19 19 H 1.48498 * 109.47177 * 329.99680 * 16 14 12 20 20 C 1.50701 * 109.46962 * 119.99624 * 2 1 3 21 21 C 1.38240 * 119.99925 * 185.62014 * 20 2 1 22 22 C 1.38239 * 119.99657 * 179.97438 * 21 20 2 23 23 C 1.38231 * 120.00081 * 359.97438 * 22 21 20 24 24 C 1.38225 * 120.00343 * 0.26972 * 23 22 21 25 25 C 1.38241 * 119.99947 * 5.64683 * 20 2 1 26 26 H 1.09006 * 109.47071 * 300.00310 * 1 2 3 27 27 H 1.09003 * 109.47229 * 60.00196 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46745 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46629 * 299.99530 * 3 2 1 31 31 H 1.08996 * 109.47299 * 60.00035 * 3 2 1 32 32 H 0.97001 * 119.99866 * 359.97438 * 6 4 2 33 33 H 0.97001 * 119.99792 * 359.97438 * 7 6 4 34 34 H 1.09003 * 109.46834 * 299.99388 * 10 8 7 35 35 H 1.08994 * 109.47617 * 59.99603 * 10 8 7 36 36 H 0.96999 * 119.99757 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.00173 * 0.02562 * 21 20 2 38 38 H 1.07998 * 119.99447 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.99633 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.00310 * 179.73091 * 24 23 22 41 41 H 1.07992 * 120.00101 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6447 -1.7517 -1.1219 6 7 1.8011 -0.1889 -2.4514 7 7 2.2685 -0.8491 -3.5952 8 6 2.0377 -0.3271 -4.8162 9 8 1.4250 0.7139 -4.9247 10 6 2.5400 -1.0377 -6.0466 11 16 2.0746 -0.0949 -7.5200 12 6 2.7678 -1.1224 -8.7723 13 1 3.2896 -2.0280 -8.5002 14 6 2.6431 -0.7680 -10.1085 15 7 2.0075 0.3360 -10.4401 16 14 3.3774 -1.8578 -11.4362 17 1 2.3707 -2.8614 -11.8656 18 1 3.7717 -1.0231 -12.5995 19 1 4.5735 -2.5548 -10.8990 20 6 2.0323 -0.7103 1.2305 21 6 3.3860 -0.7361 1.5096 22 6 3.8466 -1.3872 2.6387 23 6 2.9536 -2.0121 3.4888 24 6 1.6005 -1.9908 3.2072 25 6 1.1394 -1.3367 2.0799 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.3110 0.6437 -2.5382 33 1 2.7588 -1.6815 -3.5084 34 1 3.6255 -1.1245 -5.9983 35 1 2.0978 -2.0326 -6.0977 36 1 1.9207 0.5838 -11.3738 37 1 4.0835 -0.2467 0.8460 38 1 4.9042 -1.4076 2.8564 39 1 3.3136 -2.5205 4.3712 40 1 0.9032 -2.4827 3.8691 41 1 0.0820 -1.3173 1.8615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264655226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:32 Heat of formation + Delta-G solvation = -18.860430 kcal Electronic energy + Delta-G solvation = -23776.134564 eV Core-core repulsion = 20169.434808 eV Total energy + Delta-G solvation = -3606.699756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03349 -39.55600 -38.50471 -35.67710 -35.24257 -32.48093 -31.75505 -31.30669 -29.95947 -28.47336 -27.83215 -25.54128 -24.41756 -22.62260 -22.28729 -21.40167 -19.83684 -18.06209 -17.88837 -17.23406 -17.02631 -15.97450 -15.72554 -15.33588 -15.20303 -14.84595 -14.69226 -14.49844 -14.35836 -14.19085 -13.73354 -13.42735 -13.13733 -12.81546 -12.69070 -12.65840 -12.49942 -12.33498 -12.10246 -11.89422 -11.20211 -11.16687 -11.10307 -11.07009 -11.01401 -10.82597 -10.19041 -9.89106 -9.73311 -9.11797 -9.11410 -8.98341 -8.33854 -8.33770 -6.57813 -6.27086 -3.98750 1.05090 1.20025 1.82168 2.24967 2.89981 3.14543 3.20264 3.27075 3.37228 3.53754 3.98239 4.10791 4.14796 4.35663 4.48592 4.59876 4.76410 4.79749 4.87702 5.03215 5.08647 5.13942 5.17395 5.28887 5.32253 5.39611 5.40737 5.52718 5.66833 5.74856 5.75021 5.75546 5.79721 6.02797 6.22938 6.28775 6.34359 6.66178 6.68348 6.77446 7.52873 7.55564 7.86088 8.30304 8.46164 9.18634 10.80285 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.032144 B = 0.002159 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.869488 B =12966.657587 C =13411.549257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.145 4.145 4 C 0.520 3.480 5 O -0.532 6.532 6 N -0.518 5.518 7 N -0.532 5.532 8 C 0.535 3.465 9 O -0.517 6.517 10 C -0.146 4.146 11 S -0.051 6.051 12 C -0.537 4.537 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.059 4.059 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.430 0.570 33 H 0.430 0.570 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.269 0.731 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 -1.367 27.557 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 C -0.202 4.202 4 C 0.305 3.695 5 O -0.407 6.407 6 N -0.265 5.265 7 N -0.283 5.283 8 C 0.321 3.679 9 O -0.390 6.390 10 C -0.297 4.297 11 S 0.175 5.825 12 C -0.685 4.685 13 H 0.093 0.907 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.060 4.060 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.130 4.130 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.273 0.727 33 H 0.271 0.729 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.292 -0.252 27.285 27.317 hybrid contribution 1.217 -1.965 -0.796 2.445 sum -0.075 -2.217 26.489 26.582 Atomic orbital electron populations 1.22021 0.91461 1.03366 1.03662 1.19618 0.97655 0.96131 0.89948 1.21993 1.02172 0.92482 1.03578 1.20629 0.80258 0.85823 0.82743 1.90745 1.40836 1.23073 1.86003 1.44871 1.57468 1.26015 0.98131 1.45197 1.59295 1.26463 0.97382 1.20682 0.79393 0.85591 0.82194 1.90718 1.39842 1.22839 1.85587 1.23487 1.04696 1.04432 0.97129 1.85414 1.73918 1.31436 0.91748 1.22868 1.41869 1.11142 0.92666 0.90716 1.24998 0.95010 0.95574 0.97965 1.70010 1.39373 1.22411 1.18457 0.86141 0.79288 0.79758 0.80170 1.20220 1.20729 1.19632 1.19207 0.93740 0.98628 0.94410 1.20932 0.94796 0.98571 0.96638 1.21105 0.99666 0.98163 0.94903 1.21153 0.93548 0.99544 0.99573 1.21102 0.95747 0.99692 0.97517 1.21132 0.99768 0.97406 0.94717 0.90412 0.91215 0.91285 0.91453 0.91264 0.90565 0.72745 0.72851 0.88494 0.88494 0.92103 0.86366 0.86099 0.86237 0.86091 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.11 37.16 0.26 -0.77 16 2 C -0.03 -0.26 0.72 -156.82 -0.11 -0.37 16 3 C -0.14 -1.03 8.07 37.16 0.30 -0.73 16 4 C 0.52 6.28 6.47 -10.99 -0.07 6.21 16 5 O -0.53 -8.09 15.37 5.55 0.09 -8.01 16 6 N -0.52 -6.50 6.09 31.22 0.19 -6.31 16 7 N -0.53 -7.67 6.26 31.22 0.20 -7.47 16 8 C 0.53 9.56 7.96 -10.98 -0.09 9.47 16 9 O -0.52 -10.82 15.70 5.56 0.09 -10.73 16 10 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 11 S -0.05 -1.34 20.57 -107.50 -2.21 -3.55 16 12 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 13 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 16 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.06 -0.58 4.24 -104.62 -0.44 -1.02 16 21 C -0.09 -0.91 8.37 -39.58 -0.33 -1.25 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.11 -0.98 8.99 -39.58 -0.36 -1.34 16 26 H 0.08 0.41 7.78 -51.93 -0.40 0.00 16 27 H 0.07 0.46 7.97 -51.93 -0.41 0.04 16 28 H 0.07 0.51 7.25 -51.93 -0.38 0.14 16 29 H 0.07 0.50 7.10 -51.93 -0.37 0.13 16 30 H 0.07 0.45 7.27 -51.93 -0.38 0.07 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.43 4.97 6.92 -182.60 -1.26 3.70 16 33 H 0.43 5.65 8.00 -182.60 -1.46 4.19 16 34 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 35 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 1.15 7.25 -52.49 -0.38 0.77 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.13 0.88 5.91 -52.49 -0.31 0.57 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.80 361.46 -9.54 -44.34 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.44 Total: 4.42 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.61 Total: -9.30 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.12 Total: -38.69 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.80 -9.54 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264655226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.482 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds