Wall clock time and date at job start Tue Mar 31 2020 13:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47272 * 2 1 4 4 H 1.09006 * 109.47302 * 56.10519 * 3 2 1 5 5 N 1.46903 * 109.47257 * 296.10853 * 3 2 1 6 6 C 1.46899 * 111.00327 * 153.22078 * 5 3 2 7 7 H 1.09002 * 109.47050 * 36.93421 * 6 5 3 8 8 C 1.53006 * 109.46940 * 276.93803 * 6 5 3 9 9 C 1.53001 * 109.47299 * 156.93753 * 6 5 3 10 10 C 1.50696 * 109.46977 * 294.99923 * 9 6 5 11 11 H 1.08001 * 120.00139 * 359.97438 * 10 9 6 12 12 C 1.37882 * 119.99822 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99500 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00060 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47150 * 90.00042 * 14 12 10 16 16 H 1.48500 * 109.46891 * 210.00163 * 14 12 10 17 17 H 1.48495 * 109.46983 * 329.99790 * 14 12 10 18 18 C 1.50700 * 109.47436 * 176.10831 * 3 2 1 19 19 N 1.29026 * 124.91562 * 255.01825 * 18 3 2 20 20 C 1.31787 * 117.12487 * 179.97438 * 19 18 3 21 21 C 1.50697 * 122.75023 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47129 * 185.00279 * 21 20 19 23 23 F 1.39904 * 109.47088 * 305.00082 * 21 20 19 24 24 F 1.39901 * 109.47113 * 65.00346 * 21 20 19 25 25 C 1.33637 * 114.49718 * 0.02562 * 20 19 18 26 26 S 1.70974 * 124.91521 * 74.97278 * 18 3 2 27 27 H 1.09005 * 109.46883 * 305.11305 * 1 2 3 28 28 H 1.08999 * 109.47225 * 65.11101 * 1 2 3 29 29 H 1.09000 * 109.47279 * 185.11599 * 1 2 3 30 30 H 1.09005 * 109.46614 * 240.00025 * 2 1 3 31 31 H 1.09002 * 109.46829 * 120.00189 * 2 1 3 32 32 H 1.00899 * 110.99753 * 277.17221 * 5 3 2 33 33 H 1.09002 * 109.47000 * 185.04643 * 8 6 5 34 34 H 1.08997 * 109.46900 * 305.04954 * 8 6 5 35 35 H 1.09000 * 109.47065 * 65.04822 * 8 6 5 36 36 H 1.08999 * 109.46818 * 54.99885 * 9 6 5 37 37 H 1.09004 * 109.46778 * 174.99936 * 9 6 5 38 38 H 0.97006 * 119.99656 * 179.97438 * 13 12 10 39 39 H 1.08001 * 126.03618 * 180.26053 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6208 1.9760 0.8531 5 7 1.6286 2.1073 -1.2437 6 6 1.5122 3.5589 -1.0510 7 1 2.2975 3.9000 -0.3764 8 6 0.1444 3.8852 -0.4479 9 6 1.6563 4.2657 -2.4003 10 6 3.0472 4.0450 -2.9369 11 1 3.7574 3.4596 -2.3718 12 6 3.4133 4.5914 -4.1487 13 7 4.6272 4.3992 -4.6167 14 14 2.1855 5.6057 -5.1250 15 1 2.2969 7.0327 -4.7296 16 1 2.4737 5.4700 -6.5755 17 1 0.8100 5.1206 -4.8462 18 6 3.5439 1.4435 0.0964 19 7 4.2157 1.7406 1.1572 20 6 5.5297 1.6910 1.0698 21 6 6.4367 2.0122 2.2296 22 9 7.7684 1.9831 1.8023 23 9 6.1323 3.2863 2.7208 24 9 6.2512 1.0653 3.2427 25 6 5.9920 1.3326 -0.1318 26 16 4.6069 1.0502 -1.1836 27 1 -0.3633 0.5911 0.8407 28 1 -0.3633 0.4325 -0.9322 29 1 -0.3634 -1.0236 0.0916 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 2.2654 1.8923 -1.9963 33 1 0.0224 4.9667 -0.3880 34 1 -0.6399 3.4654 -1.0777 35 1 0.0764 3.4560 0.5517 36 1 0.9275 3.8605 -3.1023 37 1 1.4818 5.3339 -2.2714 38 1 4.8847 4.7833 -5.4694 39 1 7.0310 1.2290 -0.4078 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276645608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:12 Heat of formation + Delta-G solvation = -120.202608 kcal Electronic energy + Delta-G solvation = -25812.682309 eV Core-core repulsion = 21659.731286 eV Total energy + Delta-G solvation = -4152.951023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.12601 -47.68313 -47.55994 -39.94004 -37.56861 -34.32866 -32.33911 -31.23168 -29.64403 -27.98530 -26.91677 -26.08134 -23.31577 -22.74151 -20.89713 -20.30543 -19.55908 -18.88936 -18.49317 -18.12292 -16.91971 -16.61430 -15.74784 -15.27264 -14.79309 -14.53651 -14.49972 -14.25404 -14.19929 -14.03664 -13.79049 -13.75000 -13.71729 -13.47703 -12.89367 -12.68322 -12.55531 -12.12044 -11.91666 -11.70128 -11.56581 -11.48474 -11.39193 -10.94974 -10.82795 -10.74837 -10.48408 -9.86422 -9.68579 -9.63303 -9.49591 -9.24946 -8.86133 -8.63028 -8.12875 -6.14407 -4.13606 0.59140 1.26549 1.66222 2.42538 2.64173 3.25636 3.34025 3.37766 3.56115 4.05711 4.38008 4.39534 4.42656 4.54154 5.05177 5.17734 5.21151 5.22908 5.29381 5.56429 5.69377 5.73317 5.81966 5.88464 6.00690 6.06305 6.09935 6.25668 6.39272 6.53657 6.59795 6.69198 7.02314 7.17411 7.49643 7.64582 7.68805 7.87762 8.39016 8.86357 9.48395 10.97686 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.005005 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.192498 B = 5592.515721 C = 6865.733578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.159 3.841 4 H 0.104 0.896 5 N -0.662 5.662 6 C 0.091 3.909 7 H 0.038 0.962 8 C -0.138 4.138 9 C -0.018 4.018 10 C -0.532 4.532 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.898 5.898 14 Si 0.878 3.122 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.264 1.264 18 C 0.020 3.980 19 N -0.450 5.450 20 C -0.029 4.029 21 C 0.550 3.450 22 F -0.172 7.172 23 F -0.168 7.168 24 F -0.172 7.172 25 C -0.221 4.221 26 S 0.244 5.756 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.356 0.644 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.028 0.972 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -9.198 9.979 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.044 3.956 4 H 0.122 0.878 5 N -0.296 5.296 6 C -0.018 4.018 7 H 0.056 0.944 8 C -0.196 4.196 9 C -0.055 4.055 10 C -0.569 4.569 11 H 0.093 0.907 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.706 3.294 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.188 1.188 18 C -0.260 4.260 19 N -0.164 5.164 20 C -0.165 4.165 21 C 0.492 3.508 22 F -0.154 7.154 23 F -0.149 7.149 24 F -0.154 7.154 25 C -0.363 4.363 26 S 0.503 5.497 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.179 0.821 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.149 -9.415 9.320 13.421 hybrid contribution 1.434 1.321 0.335 1.979 sum -0.714 -8.094 9.655 12.619 Atomic orbital electron populations 1.21606 0.94294 1.00618 1.03038 1.21530 0.97411 0.93702 1.01832 1.20582 0.81488 0.97276 0.96264 0.87770 1.60919 1.53760 1.10483 1.04430 1.21515 0.95359 0.86143 0.98789 0.94374 1.21841 0.97879 1.00274 0.99617 1.19778 0.98205 0.95366 0.92198 1.21157 0.96512 1.34239 1.05027 0.90694 1.24966 0.94960 0.95684 0.97279 1.69901 1.18294 1.45213 1.20190 0.86803 0.82561 0.80895 0.79186 1.20456 1.21453 1.18826 1.28623 1.03679 1.01984 0.91731 1.65793 1.04222 1.16680 1.29675 1.19846 0.91385 1.11172 0.94132 1.17223 0.77801 0.74738 0.80993 1.93181 1.36017 1.96284 1.89875 1.93233 1.92890 1.40066 1.88712 1.93209 1.95069 1.64843 1.62245 1.27057 1.06110 1.07017 0.96110 1.84508 0.94153 1.57698 1.13379 0.93111 0.90964 0.93395 0.91620 0.91832 0.82071 0.93004 0.92283 0.93949 0.95412 0.96291 0.92690 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.73 37.16 0.36 -1.18 16 2 C -0.11 -1.29 5.60 -26.74 -0.15 -1.44 16 3 C 0.16 2.38 2.33 -68.87 -0.16 2.21 16 4 H 0.10 1.59 7.02 -51.93 -0.36 1.23 16 5 N -0.66 -11.23 5.55 -100.95 -0.56 -11.79 16 6 C 0.09 1.72 2.42 -67.71 -0.16 1.55 16 7 H 0.04 0.79 7.72 -51.93 -0.40 0.39 16 8 C -0.14 -2.17 9.35 37.16 0.35 -1.83 16 9 C -0.02 -0.40 3.65 -27.88 -0.10 -0.50 16 10 C -0.53 -13.76 8.68 -34.44 -0.30 -14.06 16 11 H 0.08 1.99 6.87 -52.49 -0.36 1.63 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -25.84 13.96 55.43 0.77 -25.07 16 14 Si 0.88 20.81 27.47 -169.99 -4.67 16.15 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 18 C 0.02 0.33 6.05 -13.46 -0.08 0.25 16 19 N -0.45 -7.80 10.53 -8.06 -0.08 -7.88 16 20 C -0.03 -0.47 6.17 -84.22 -0.52 -0.99 16 21 C 0.55 8.24 3.56 36.00 0.13 8.36 16 22 F -0.17 -2.36 16.42 2.25 0.04 -2.32 16 23 F -0.17 -2.71 17.30 2.25 0.04 -2.67 16 24 F -0.17 -2.50 17.30 2.25 0.04 -2.47 16 25 C -0.22 -3.30 10.63 29.12 0.31 -3.00 16 26 S 0.24 3.84 21.14 -107.50 -2.27 1.57 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.36 6.66 5.82 -39.29 -0.23 6.43 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.60 7.38 -51.93 -0.38 0.21 16 36 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 37 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.19 2.29 7.70 -52.49 -0.40 1.89 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -28.27 346.37 -6.93 -35.20 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.02 Total: 2.78 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.43 Total: -8.71 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.13 Total: -44.75 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.11 Total: -7.46 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.27 Total: 1.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.27 -6.93 -35.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276645608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.002 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds