Wall clock time and date at job start Tue Mar 31 2020 13:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47119 * 2 1 4 4 C 1.50699 * 109.47402 * 239.99867 * 2 1 3 5 5 H 1.07997 * 120.00049 * 240.84298 * 4 2 1 6 6 C 1.37880 * 119.99876 * 60.83373 * 4 2 1 7 7 N 1.31512 * 120.00201 * 194.57871 * 6 4 2 8 8 Si 1.86804 * 119.99738 * 14.58027 * 6 4 2 9 9 H 1.48503 * 109.46844 * 84.45274 * 8 6 4 10 10 H 1.48500 * 109.46844 * 204.45011 * 8 6 4 11 11 H 1.48496 * 109.47355 * 324.45090 * 8 6 4 12 12 C 1.53006 * 109.46955 * 120.00016 * 2 1 3 13 13 S 1.81400 * 109.46876 * 299.99897 * 12 2 1 14 14 O 1.42102 * 110.54406 * 68.38195 * 13 12 2 15 15 O 1.42097 * 110.54726 * 291.62456 * 13 12 2 16 16 N 1.65600 * 104.44747 * 180.02562 * 13 12 2 17 17 C 1.46501 * 120.00185 * 65.00294 * 16 13 12 18 18 C 1.50700 * 109.47331 * 165.00028 * 17 16 13 19 19 C 1.38382 * 119.91958 * 270.02175 * 18 17 16 20 20 C 1.38347 * 120.29803 * 180.02562 * 19 18 17 21 21 C 1.37964 * 120.15562 * 359.66854 * 20 19 18 22 22 C 1.39616 * 119.84066 * 0.60654 * 21 20 19 23 23 C 1.43203 * 120.14575 * 179.69221 * 22 21 20 24 24 N 9.83561 * 107.45317 * 127.34887 * 2 1 3 25 25 C 1.37924 * 119.92192 * 90.00217 * 18 17 16 26 26 H 1.08996 * 109.47507 * 310.23176 * 1 2 3 27 27 H 1.09000 * 109.47315 * 70.23651 * 1 2 3 28 28 H 1.09003 * 109.47241 * 190.23055 * 1 2 3 29 29 H 1.08999 * 109.47281 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47217 * 300.00067 * 3 2 1 31 31 H 1.09007 * 109.46792 * 60.00023 * 3 2 1 32 32 H 0.97004 * 120.00042 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46716 * 180.02562 * 12 2 1 34 34 H 1.08991 * 109.47197 * 59.99886 * 12 2 1 35 35 H 0.97007 * 120.00056 * 245.00146 * 16 13 12 36 36 H 1.09002 * 109.46929 * 44.99543 * 17 16 13 37 37 H 1.09000 * 109.47046 * 285.00286 * 17 16 13 38 38 H 1.07991 * 119.85251 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.92086 * 179.97438 * 20 19 18 40 40 H 1.07993 * 120.07966 * 180.30153 * 21 20 19 41 41 H 1.07994 * 120.07924 * 0.03714 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6420 -1.5964 -1.1313 6 6 1.7135 -0.2294 -2.4826 7 7 1.8969 -0.9847 -3.5435 8 14 1.0211 1.4952 -2.6723 9 1 2.1370 2.4736 -2.7239 10 1 0.2328 1.5767 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0279 -0.0184 2.8544 15 8 2.0478 1.4100 2.8545 16 7 2.0540 -0.7400 3.9936 17 6 3.5025 -0.7962 4.2055 18 6 3.7879 -1.3240 5.5879 19 6 3.8985 -0.4468 6.6524 20 6 4.1609 -0.9228 7.9247 21 6 4.3073 -2.2774 8.1414 22 6 4.2026 -3.1675 7.0708 23 6 4.3600 -4.5743 7.2872 24 7 4.4799 -5.6922 7.4589 25 6 3.9378 -2.6803 5.7892 26 1 -0.3634 0.6637 0.7845 27 1 -0.3634 0.3475 -0.9671 28 1 -0.3634 -1.0113 0.1825 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6723 -0.6464 -4.4245 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 1.4573 -1.2146 4.5934 36 1 3.9236 0.2041 4.1043 37 1 3.9527 -1.4566 3.4643 38 1 3.7804 0.6141 6.4892 39 1 4.2465 -0.2327 8.7510 40 1 4.5072 -2.6480 9.1358 41 1 3.8515 -3.3637 4.9574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295391437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:55 Heat of formation + Delta-G solvation = -27.511911 kcal Electronic energy + Delta-G solvation = -24591.022503 eV Core-core repulsion = 20983.947591 eV Total energy + Delta-G solvation = -3607.074912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55782 -38.45841 -38.10503 -37.66277 -36.89481 -36.21018 -34.02062 -32.29269 -32.02872 -28.92857 -28.10966 -27.09296 -26.67764 -24.85151 -22.74755 -21.62335 -20.22926 -19.61308 -18.70389 -18.08208 -17.43282 -17.18103 -17.03163 -16.89490 -16.53882 -15.90323 -15.25678 -15.11018 -14.98088 -14.94507 -14.73897 -14.37831 -14.29844 -14.13343 -14.11899 -13.92125 -13.64965 -13.33319 -13.17290 -13.00947 -12.93144 -12.68507 -12.60991 -12.54476 -12.31986 -11.97303 -11.96542 -11.81666 -11.75498 -10.95651 -10.66181 -10.53019 -10.28157 -9.90852 -9.85720 -8.33083 -6.32371 -0.63816 -0.17384 0.34214 1.32173 1.37142 1.45021 1.59204 1.82365 2.05972 2.31582 2.83473 2.84558 2.92304 3.01841 3.34027 3.64301 3.79999 3.96370 4.12011 4.14277 4.28491 4.31453 4.37852 4.44918 4.56348 4.64932 4.65928 4.73399 4.80585 4.87395 4.93375 5.00548 5.05155 5.20161 5.32401 5.41542 5.43508 5.56630 5.57089 5.66177 5.88130 6.14469 6.28682 6.43279 6.71469 7.32345 8.82768 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.003059 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.109528 B = 9151.063547 C = 9800.433923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.044 3.956 3 C -0.187 4.187 4 C -0.503 4.503 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.917 3.083 9 H -0.274 1.274 10 H -0.309 1.309 11 H -0.220 1.220 12 C -0.587 4.587 13 S 2.618 3.382 14 O -0.989 6.989 15 O -0.980 6.980 16 N -1.109 6.109 17 C 0.141 3.859 18 C -0.103 4.103 19 C -0.070 4.070 20 C -0.116 4.116 21 C -0.057 4.057 22 C -0.047 4.047 23 C 0.278 3.722 24 N -0.471 5.471 25 C -0.055 4.055 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.424 0.576 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 2.674 24.232 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.042 3.958 3 C -0.244 4.244 4 C -0.541 4.541 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.238 1.238 11 H -0.145 1.145 12 C -0.718 4.718 13 S 2.714 3.286 14 O -0.979 6.979 15 O -0.970 6.970 16 N -0.870 5.870 17 C 0.016 3.984 18 C -0.105 4.105 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.078 4.078 22 C -0.050 4.050 23 C -0.036 4.036 24 N -0.147 5.147 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.260 0.740 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.164 0.836 39 H 0.180 0.820 40 H 0.169 0.831 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.844 1.791 24.293 24.836 hybrid contribution -0.151 -0.011 -1.107 1.117 sum 4.693 1.780 23.186 23.723 Atomic orbital electron populations 1.22707 0.97045 1.02103 1.01555 1.18205 0.92589 0.92269 0.92769 1.22847 1.03146 0.97320 1.01065 1.20974 1.32292 1.11577 0.89306 0.93144 1.25690 0.95449 1.00511 0.95763 1.70061 1.50487 1.37662 0.99479 0.86716 0.79848 0.81853 0.76903 1.20125 1.23825 1.14454 1.30420 1.13335 1.13511 1.14583 1.04601 0.73511 0.74873 0.75598 1.93540 1.31252 1.86982 1.86112 1.93518 1.78369 1.39360 1.85748 1.55438 1.14893 1.70869 1.45831 1.20525 0.79427 1.03579 0.94820 1.19629 1.02581 0.92947 0.95325 1.21719 0.93849 1.01128 0.92203 1.21419 0.99147 0.95025 0.97825 1.21501 0.94983 0.93004 0.98327 1.16034 1.09430 0.83769 0.95811 1.26080 0.92213 0.92908 0.92387 1.81361 1.10952 1.13288 1.09051 1.21244 0.95126 0.95516 0.95714 0.92940 0.92717 0.91825 0.90803 0.94074 0.91475 0.92575 0.83661 0.84298 0.73964 0.88359 0.88686 0.83611 0.81960 0.83113 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.44 6.95 71.98 0.50 -6.94 16 2 C 0.04 1.87 0.52 -52.93 -0.03 1.84 16 3 C -0.19 -7.61 7.22 71.98 0.52 -7.09 16 4 C -0.50 -26.36 8.62 25.60 0.22 -26.14 16 5 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 6 C 0.02 1.36 5.31 84.66 0.45 1.80 16 7 N -0.94 -56.50 13.96 21.45 0.30 -56.20 16 8 Si 0.92 43.19 22.79 68.60 1.56 44.76 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 11 H -0.22 -9.40 4.67 99.48 0.46 -8.93 16 12 C -0.59 -18.57 4.99 71.98 0.36 -18.21 16 13 S 2.62 74.09 4.50 -56.49 -0.25 73.83 16 14 O -0.99 -33.73 15.93 -127.65 -2.03 -35.77 16 15 O -0.98 -31.45 15.11 -127.65 -1.93 -33.38 16 16 N -1.11 -20.17 5.88 -190.79 -1.12 -21.29 16 17 C 0.14 1.97 6.25 85.63 0.54 2.50 16 18 C -0.10 -1.17 5.27 -19.90 -0.10 -1.27 16 19 C -0.07 -0.62 9.69 22.33 0.22 -0.40 16 20 C -0.12 -0.70 10.03 22.23 0.22 -0.48 16 21 C -0.06 -0.44 9.76 22.54 0.22 -0.22 16 22 C -0.05 -0.56 5.73 -21.36 -0.12 -0.68 16 23 C 0.28 4.88 15.34 88.32 1.35 6.23 16 24 N -0.47 -11.08 18.55 19.02 0.35 -10.73 16 25 C -0.05 -0.63 9.41 22.54 0.21 -0.42 16 26 H 0.05 2.03 6.21 -2.39 -0.01 2.02 16 27 H 0.05 2.40 4.32 -2.39 -0.01 2.39 16 28 H 0.06 2.55 8.11 -2.39 -0.02 2.53 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.04 1.75 2.28 -2.39 -0.01 1.74 16 31 H 0.07 2.49 5.46 -2.38 -0.01 2.48 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.15 3.91 8.14 -2.39 -0.02 3.89 16 34 H 0.14 4.04 8.14 -2.40 -0.02 4.02 16 35 H 0.42 6.42 8.61 -96.74 -0.83 5.58 16 36 H 0.10 1.33 7.64 -2.39 -0.02 1.31 16 37 H 0.10 1.04 8.08 -2.39 -0.02 1.02 16 38 H 0.15 1.02 8.06 -2.92 -0.02 1.00 16 39 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -74.46 344.32 1.43 -73.03 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.00 Total: 15.24 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 4.56 Total: -49.48 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -0.47 Total: -88.22 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -3.96 Total: -69.14 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.56 Total: 44.76 kcal Atomic # 16 Polarization: 74.09 SS G_CDS: -0.25 Total: 73.83 kcal Total: -74.46 1.43 -73.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295391437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.514 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds