Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47107 * 2 1 4 4 C 1.53004 * 109.46962 * 240.00027 * 2 1 3 5 5 C 1.50705 * 109.46671 * 60.00054 * 4 2 1 6 6 H 1.07999 * 120.00381 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99305 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99517 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00415 * 0.02562 * 7 5 4 10 10 H 1.48490 * 109.47466 * 89.99596 * 9 7 5 11 11 H 1.48502 * 109.46985 * 209.99660 * 9 7 5 12 12 H 1.48497 * 109.46729 * 329.99479 * 9 7 5 13 13 C 1.53003 * 109.47200 * 119.99984 * 2 1 3 14 14 N 1.46498 * 109.47188 * 299.99989 * 13 2 1 15 15 C 1.33795 * 124.17860 * 270.03934 * 14 13 2 16 16 O 1.21538 * 123.77059 * 359.96507 * 15 14 13 17 17 N 1.34523 * 112.45569 * 179.97438 * 15 14 13 18 18 C 1.47308 * 106.61978 * 359.77017 * 17 15 14 19 19 H 1.08999 * 110.69646 * 241.76594 * 18 17 15 20 20 C 1.50702 * 110.49759 * 118.82113 * 18 17 15 21 21 C 1.33397 * 125.20095 * 145.60106 * 20 18 17 22 22 C 1.38425 * 114.91904 * 179.85917 * 21 20 18 23 23 C 1.33389 * 114.92034 * 0.43013 * 22 21 20 24 24 S 1.75881 * 109.59461 * 359.77164 * 23 22 21 25 25 C 1.34773 * 124.17603 * 90.00047 * 14 13 2 26 26 O 1.21233 * 127.15617 * 359.97438 * 25 14 13 27 27 H 1.09005 * 109.46796 * 299.99971 * 1 2 3 28 28 H 1.08998 * 109.47197 * 59.99444 * 1 2 3 29 29 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47549 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47545 * 300.00342 * 3 2 1 32 32 H 1.09005 * 109.47269 * 60.00318 * 3 2 1 33 33 H 1.09003 * 109.46854 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47253 * 300.00273 * 4 2 1 35 35 H 0.97006 * 119.99939 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46937 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.46759 * 59.99884 * 13 2 1 38 38 H 0.97003 * 126.68471 * 180.02562 * 17 15 14 39 39 H 1.07996 * 122.53780 * 0.02562 * 21 20 18 40 40 H 1.07995 * 122.53804 * 180.20192 * 22 21 20 41 41 H 1.07999 * 125.20428 * 179.74933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9450 -2.0003 -3.9034 10 1 2.0865 -3.2110 -3.9494 11 1 3.7373 -1.9075 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2493 14 7 1.5518 -0.0307 2.4454 15 6 2.2046 0.9632 3.0587 16 8 3.2764 1.3986 2.6860 17 7 1.5423 1.4266 4.1340 18 6 0.2996 0.6418 4.2337 19 1 -0.5728 1.2876 4.1341 20 6 0.2558 -0.1137 5.5369 21 6 -0.8474 -0.3639 6.2440 22 6 -0.6424 -1.0800 7.4107 23 6 0.6283 -1.4037 7.6557 24 16 1.6521 -0.7940 6.3621 25 6 0.3890 -0.3175 3.0636 26 8 -0.4196 -1.1633 2.7465 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7209 -1.2495 34 1 1.6767 -1.7489 -1.2493 35 1 1.6672 -0.1927 -5.6868 36 1 3.1300 -0.7216 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 1.8258 2.1409 4.7258 39 1 -1.8265 -0.0350 5.9287 40 1 -1.4496 -1.3527 8.0743 41 1 0.9753 -1.9554 8.5168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348953961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = -8.696498 kcal Electronic energy + Delta-G solvation = -25523.166284 eV Core-core repulsion = 21916.907270 eV Total energy + Delta-G solvation = -3606.259015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.54665 -38.66380 -38.23505 -37.15117 -36.11545 -34.04348 -32.14972 -30.76341 -27.99897 -27.29870 -26.53565 -26.45143 -23.94813 -22.93982 -22.45251 -20.63678 -19.80929 -18.52129 -17.88898 -17.74580 -17.06943 -16.76718 -16.08155 -15.63472 -15.47261 -15.32773 -14.44935 -14.22479 -14.04148 -13.78524 -13.70584 -13.27380 -13.26271 -13.00642 -12.66559 -12.43468 -12.27658 -12.01731 -11.16625 -11.12846 -11.11242 -11.01962 -10.94593 -10.87376 -10.52673 -10.27175 -9.97338 -9.88736 -9.78030 -9.67159 -9.27689 -9.09398 -8.87662 -8.84204 -8.49889 -6.00178 -3.97105 0.47866 1.16182 1.57081 1.61230 2.15894 2.44903 2.92770 3.05669 3.33756 3.41498 3.44543 3.90580 4.13351 4.48595 4.63064 4.68134 5.00546 5.11614 5.17078 5.32827 5.43550 5.50322 5.56255 5.64607 5.71786 5.82966 6.01632 6.05534 6.11668 6.27057 6.39430 6.61163 6.69074 6.74176 6.93200 7.06130 7.10659 7.12967 7.21890 7.36886 7.40971 7.81472 8.10621 8.57643 9.04422 9.62072 11.12761 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.003269 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.158177 B = 8564.265289 C = 8715.890413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.120 4.120 4 C 0.000 4.000 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.122 3.878 14 N -0.565 5.565 15 C 0.703 3.297 16 O -0.527 6.527 17 N -0.730 5.730 18 C 0.168 3.832 19 H 0.141 0.859 20 C -0.202 4.202 21 C -0.104 4.104 22 C -0.137 4.137 23 C -0.207 4.207 24 S 0.131 5.869 25 C 0.528 3.472 26 O -0.451 6.451 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.439 0.561 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -0.290 27.261 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.177 4.177 4 C -0.038 4.038 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.310 5.310 15 C 0.404 3.596 16 O -0.399 6.399 17 N -0.395 5.395 18 C 0.057 3.943 19 H 0.158 0.842 20 C -0.321 4.321 21 C -0.136 4.136 22 C -0.168 4.168 23 C -0.343 4.343 24 S 0.395 5.605 25 C 0.313 3.687 26 O -0.319 6.319 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.284 0.716 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.297 -0.658 26.277 26.317 hybrid contribution -0.938 -0.474 0.406 1.126 sum -2.235 -1.133 26.683 26.801 Atomic orbital electron populations 1.21753 0.94563 1.01364 1.00342 1.20838 0.96037 0.96372 0.93480 1.21716 1.00739 0.95051 1.00243 1.19586 0.96274 0.95406 0.92554 1.21063 1.31691 1.13312 0.88546 0.90429 1.24998 0.95736 0.96770 0.95952 1.69907 1.45973 1.40616 0.97854 0.86849 0.81294 0.83929 0.77648 1.20381 1.21515 1.18993 1.22158 1.00518 0.95854 0.81206 1.46424 1.21325 1.34507 1.28747 1.15861 0.83815 0.79786 0.80166 1.91037 1.19779 1.61241 1.67875 1.45618 1.21867 1.40462 1.31578 1.20279 0.91335 0.92209 0.90500 0.84185 1.24173 0.97898 1.09259 1.00778 1.20154 0.99031 0.99903 0.94474 1.20173 0.96970 1.01247 0.98393 1.25803 0.97116 1.07578 1.03843 1.84575 1.09252 1.51326 1.15332 1.20490 0.81356 0.83654 0.83184 1.90817 1.42066 1.31632 1.67377 0.95850 0.91018 0.93041 0.92911 0.91298 0.95598 0.96248 0.96789 0.92828 0.88833 0.89103 0.71597 0.83539 0.83818 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 7.23 37.16 0.27 -2.12 16 2 C -0.07 -1.31 0.60 -154.50 -0.09 -1.40 16 3 C -0.12 -2.39 7.09 37.16 0.26 -2.13 16 4 C 0.00 -0.01 3.11 -27.88 -0.09 -0.09 16 5 C -0.51 -13.99 8.20 -34.44 -0.28 -14.27 16 6 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.12 2.06 4.73 -4.04 -0.02 2.05 16 14 N -0.56 -8.40 2.13 -120.73 -0.26 -8.66 16 15 C 0.70 10.02 7.05 -88.02 -0.62 9.40 16 16 O -0.53 -9.20 16.31 5.33 0.09 -9.11 16 17 N -0.73 -7.27 5.94 -60.33 -0.36 -7.63 16 18 C 0.17 1.63 4.13 -69.36 -0.29 1.34 16 19 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.20 -1.82 5.59 -36.00 -0.20 -2.02 16 21 C -0.10 -0.80 10.05 -41.20 -0.41 -1.22 16 22 C -0.14 -0.96 10.18 -41.21 -0.42 -1.38 16 23 C -0.21 -1.47 11.23 29.04 0.33 -1.15 16 24 S 0.13 1.16 23.01 -107.50 -2.47 -1.32 16 25 C 0.53 7.23 5.98 -10.55 -0.06 7.17 16 26 O -0.45 -7.25 16.87 5.60 0.09 -7.15 16 27 H 0.02 0.40 6.19 -51.93 -0.32 0.08 16 28 H 0.07 1.54 6.62 -51.93 -0.34 1.19 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 32 H 0.02 0.47 6.17 -51.93 -0.32 0.15 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 1.56 7.86 -51.93 -0.41 1.15 16 37 H 0.09 1.47 8.00 -51.93 -0.42 1.06 16 38 H 0.44 3.24 8.96 -40.82 -0.37 2.87 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -33.28 345.09 -8.63 -41.90 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.30 Total: 0.71 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.73 Total: -4.03 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.16 Total: -43.22 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.18 Total: -16.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.47 Total: -1.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.28 -8.63 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348953961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.206 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds