Wall clock time and date at job start Tue Mar 31 2020 14:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99712 * 2 1 4 4 N 1.46498 * 109.47018 * 125.21952 * 3 2 1 5 5 C 1.46494 * 119.99712 * 87.03882 * 4 3 2 6 6 C 1.50703 * 109.47546 * 88.02027 * 5 4 3 7 7 H 1.08005 * 119.99835 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00318 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00014 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00262 * 179.72337 * 8 6 5 11 11 H 1.48495 * 109.47392 * 180.27583 * 10 8 6 12 12 H 1.48497 * 109.46868 * 300.27955 * 10 8 6 13 13 H 1.48509 * 109.46866 * 60.27661 * 10 8 6 14 14 C 1.34772 * 120.00100 * 267.03093 * 4 3 2 15 15 O 1.21687 * 120.00143 * 6.55968 * 14 4 3 16 16 C 1.46677 * 120.00251 * 186.55630 * 14 4 3 17 17 C 1.35667 * 126.12818 * 10.55125 * 16 14 4 18 18 N 1.30948 * 114.19248 * 180.02562 * 17 16 14 19 19 C 1.29430 * 117.36108 * 359.97438 * 18 17 16 20 20 C 1.50700 * 124.80135 * 180.02562 * 19 18 17 21 21 H 1.08998 * 110.33286 * 197.22608 * 20 19 18 22 22 C 1.54485 * 110.37202 * 74.97936 * 20 19 18 23 23 C 1.54505 * 104.05945 * 217.18870 * 22 20 19 24 24 C 1.54477 * 104.06847 * 0.02562 * 23 22 20 25 25 O 1.44423 * 104.80384 * 23.97601 * 24 23 22 26 26 S 1.70955 * 110.39318 * 359.72730 * 19 18 17 27 27 H 1.08000 * 120.00808 * 5.73568 * 1 2 3 28 28 H 1.08010 * 119.99723 * 185.73617 * 1 2 3 29 29 H 1.07991 * 120.00169 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47018 * 5.22203 * 3 2 1 31 31 H 1.08993 * 109.47081 * 245.22458 * 3 2 1 32 32 H 1.08997 * 109.47540 * 328.02000 * 5 4 3 33 33 H 1.09003 * 109.47284 * 208.01765 * 5 4 3 34 34 H 0.96995 * 119.99705 * 359.72743 * 9 8 6 35 35 H 1.07997 * 122.90245 * 0.03536 * 17 16 14 36 36 H 1.08999 * 110.50650 * 335.83181 * 22 20 19 37 37 H 1.08997 * 110.51061 * 98.40836 * 22 20 19 38 38 H 1.09005 * 110.50908 * 118.64526 * 23 22 20 39 39 H 1.09001 * 110.51353 * 241.21650 * 23 22 20 40 40 H 1.08998 * 110.37548 * 142.80979 * 24 23 22 41 41 H 1.09003 * 110.36713 * 265.03785 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9974 1.3298 1.1284 5 6 4.3408 0.7648 0.9796 6 6 5.2757 1.8234 0.4536 7 1 4.9059 2.8175 0.2501 8 6 6.6029 1.5228 0.2323 9 7 7.0533 0.3123 0.4807 10 14 7.7600 2.8327 -0.4270 11 1 9.1207 2.2587 -0.5822 12 1 7.2697 3.3079 -1.7457 13 1 7.8093 3.9731 0.5230 14 6 2.6208 1.8724 2.3032 15 8 1.4701 2.2332 2.4656 16 6 3.5979 2.0280 3.3860 17 6 4.9402 1.8603 3.2823 18 7 5.5936 2.0581 4.3997 19 6 4.9013 2.3822 5.4442 20 6 5.4790 2.6482 6.8104 21 1 4.6971 2.6001 7.5683 22 6 6.1737 4.0277 6.8413 23 6 7.4103 3.8052 7.7405 24 6 7.3169 2.3175 8.1460 25 8 6.5283 1.7002 7.1054 26 16 3.2397 2.4738 5.0527 27 1 -0.5401 0.9305 -0.0935 28 1 -0.5400 -0.9307 0.0935 29 1 1.8500 -0.9352 0.0004 30 1 1.3587 2.1315 0.0935 31 1 2.6180 1.4045 -0.9330 32 1 4.3082 -0.0709 0.2807 33 1 4.6970 0.4145 1.9484 34 1 6.4526 -0.3678 0.8233 35 1 5.4277 1.5875 2.3580 36 1 6.4794 4.3238 5.8378 37 1 5.5133 4.7782 7.2755 38 1 8.3274 3.9914 7.1815 39 1 7.3634 4.4470 8.6202 40 1 8.3108 1.8715 8.1841 41 1 6.8197 2.2178 9.1109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359421616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:54 Heat of formation + Delta-G solvation = 7.561478 kcal Electronic energy + Delta-G solvation = -25049.669481 eV Core-core repulsion = 21444.115465 eV Total energy + Delta-G solvation = -3605.554016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09656 -39.42035 -38.23754 -35.72855 -34.09458 -32.43549 -32.21869 -31.21234 -28.86951 -27.32263 -25.82670 -24.86690 -23.27165 -22.67074 -21.40688 -20.83742 -19.57276 -19.03880 -17.74025 -17.11455 -16.56967 -16.28841 -15.71430 -15.38298 -15.01863 -14.73927 -14.29282 -14.23622 -13.87119 -13.84175 -13.68175 -13.24457 -13.11491 -12.78551 -12.50968 -11.88642 -11.83158 -11.75126 -11.58244 -11.43538 -11.07532 -10.90444 -10.86074 -10.80870 -10.29592 -10.21506 -9.93130 -9.77428 -9.43639 -9.18199 -9.01935 -8.98777 -8.70695 -8.38197 -7.88747 -6.68762 -4.49004 0.68656 1.49630 2.04242 2.48056 3.00418 3.32243 3.34693 3.52570 3.74704 3.87047 3.96992 4.21876 4.32405 4.58384 4.73245 4.83042 4.94775 5.03257 5.14579 5.19601 5.28258 5.40028 5.47199 5.56912 5.67069 5.71687 5.81972 5.86521 5.98098 5.99985 6.06571 6.20352 6.31121 6.66675 6.69590 6.83385 6.98942 7.02045 7.19939 7.60557 7.91285 8.19815 8.21351 8.46132 8.71971 9.19079 10.65486 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.005056 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.541372 B = 5536.426703 C = 7557.733335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.148 3.852 4 N -0.574 5.574 5 C 0.203 3.797 6 C -0.628 4.628 7 H 0.063 0.937 8 C 0.031 3.969 9 N -0.885 5.885 10 Si 1.067 2.933 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.595 3.405 15 O -0.565 6.565 16 C -0.285 4.285 17 C 0.078 3.922 18 N -0.448 5.448 19 C 0.028 3.972 20 C 0.157 3.843 21 H 0.088 0.912 22 C -0.143 4.143 23 C -0.151 4.151 24 C 0.042 3.958 25 O -0.347 6.347 26 S 0.173 5.827 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.272 0.728 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 4.377 10.892 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.303 5.303 5 C 0.083 3.917 6 C -0.666 4.666 7 H 0.081 0.919 8 C -0.177 4.177 9 N -0.518 5.518 10 Si 0.893 3.107 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.383 3.617 15 O -0.447 6.447 16 C -0.408 4.408 17 C -0.076 4.076 18 N -0.162 5.162 19 C -0.248 4.248 20 C 0.095 3.905 21 H 0.106 0.894 22 C -0.183 4.183 23 C -0.189 4.189 24 C -0.035 4.035 25 O -0.266 6.266 26 S 0.429 5.571 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.268 0.732 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.645 4.798 11.062 12.344 hybrid contribution -1.143 -0.432 -0.318 1.262 sum -3.788 4.366 10.744 12.200 Atomic orbital electron populations 1.23741 0.95777 1.01554 1.01044 1.23358 0.96207 0.99228 0.99395 1.20419 0.92070 0.95177 0.89782 1.47676 1.15573 1.57102 1.09974 1.20183 0.78278 0.95004 0.98243 1.22286 0.96084 0.98863 1.49341 0.91876 1.25934 0.97049 1.00258 0.94459 1.70848 1.39350 1.02702 1.38936 0.83550 0.76118 0.74506 0.76506 1.20295 1.21080 1.20920 1.16696 0.85751 0.77711 0.81553 1.90733 1.19081 1.52950 1.81936 1.25721 0.98925 1.18011 0.98189 1.25327 0.89942 0.93363 0.98969 1.66334 1.38511 1.13195 0.98172 1.27162 0.94340 1.04227 0.99071 1.21327 0.91003 0.89251 0.88876 0.89416 1.22990 0.96993 0.96047 1.02239 1.22919 0.99109 0.97029 0.99861 1.23439 0.96655 0.92416 0.90965 1.89324 1.41467 1.39826 1.55945 1.83511 1.07195 1.63067 1.03319 0.88588 0.88813 0.87508 0.90100 0.89273 0.94968 0.93907 0.91744 0.73213 0.89589 0.89951 0.90209 0.90405 0.88718 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 14.31 29.02 0.42 -2.26 16 2 C -0.16 -2.69 9.85 -36.02 -0.35 -3.05 16 3 C 0.15 2.76 5.84 -5.19 -0.03 2.73 16 4 N -0.57 -12.37 2.44 -177.99 -0.43 -12.80 16 5 C 0.20 4.69 3.96 -5.20 -0.02 4.67 16 6 C -0.63 -15.67 7.19 -34.44 -0.25 -15.92 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.03 0.80 5.04 -17.82 -0.09 0.71 16 9 N -0.89 -24.07 13.65 55.43 0.76 -23.31 16 10 Si 1.07 23.45 29.90 -169.99 -5.08 18.36 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.60 13.36 7.63 -12.86 -0.10 13.27 16 15 O -0.56 -13.24 16.58 5.20 0.09 -13.15 16 16 C -0.29 -6.14 6.27 -37.10 -0.23 -6.37 16 17 C 0.08 1.77 9.06 -18.85 -0.17 1.60 16 18 N -0.45 -9.61 10.47 -11.50 -0.12 -9.73 16 19 C 0.03 0.49 6.24 -13.29 -0.08 0.41 16 20 C 0.16 2.20 3.80 -27.10 -0.10 2.09 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 22 C -0.14 -1.67 6.62 -25.16 -0.17 -1.83 16 23 C -0.15 -1.45 7.09 -25.17 -0.18 -1.63 16 24 C 0.04 0.45 7.63 37.93 0.29 0.74 16 25 O -0.35 -5.39 11.30 -35.23 -0.40 -5.79 16 26 S 0.17 3.00 23.03 -107.50 -2.48 0.53 16 27 H 0.10 1.35 7.86 -52.49 -0.41 0.94 16 28 H 0.09 1.19 8.06 -52.48 -0.42 0.76 16 29 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.08 1.49 7.10 -51.93 -0.37 1.12 16 31 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 32 H 0.03 0.75 7.96 -51.93 -0.41 0.34 16 33 H 0.04 1.04 4.73 -51.93 -0.25 0.80 16 34 H 0.27 7.31 7.22 -40.82 -0.29 7.01 16 35 H 0.25 6.23 2.48 -52.49 -0.13 6.10 16 36 H 0.09 1.19 7.86 -51.93 -0.41 0.78 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -30.26 355.32 -8.67 -38.92 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.28 Total: 6.46 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.07 Total: -4.84 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.20 Total: -45.85 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.31 Total: -18.94 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.36 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.48 Total: 0.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.26 -8.67 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.485 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds