Wall clock time and date at job start Tue Mar 31 2020 12:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76195 * 103.00219 * 2 1 4 4 C 1.38791 * 120.11211 * 0.02562 * 3 2 1 5 5 C 1.38189 * 119.99846 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.89183 * 179.97438 * 5 4 3 7 7 C 1.38334 * 120.21279 * 359.97438 * 5 4 3 8 8 C 1.38206 * 120.22334 * 359.74497 * 7 5 4 9 9 C 1.38731 * 120.00338 * 0.50936 * 8 7 5 10 10 N 1.39863 * 120.10691 * 179.77147 * 9 8 7 11 11 C 1.34774 * 119.99849 * 335.16167 * 10 9 8 12 12 O 1.21392 * 120.00224 * 354.47368 * 11 10 9 13 13 C 1.49324 * 119.99917 * 174.20118 * 11 10 9 14 14 O 1.21372 * 119.99782 * 0.27794 * 13 11 10 15 15 N 1.34767 * 120.00293 * 180.27494 * 13 11 10 16 16 C 1.46494 * 120.00352 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.47694 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47415 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99740 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99899 * 180.02562 * 18 17 16 21 21 N 1.31523 * 120.00069 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00237 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46983 * 59.99423 * 22 20 18 24 24 H 1.48499 * 109.47323 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46836 * 300.00015 * 22 20 18 26 26 H 1.08993 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46784 * 299.99836 * 1 2 3 28 28 H 1.09005 * 109.47008 * 59.99631 * 1 2 3 29 29 H 1.08004 * 120.00172 * 359.95151 * 4 3 2 30 30 H 1.09003 * 109.46861 * 90.00500 * 6 5 4 31 31 H 1.08997 * 109.47100 * 209.99972 * 6 5 4 32 32 H 1.09000 * 109.47276 * 329.99909 * 6 5 4 33 33 H 1.07998 * 119.88507 * 179.97438 * 7 5 4 34 34 H 1.08006 * 119.99524 * 180.27740 * 8 7 5 35 35 H 0.97000 * 119.99728 * 155.16772 * 10 9 8 36 36 H 0.96999 * 119.99761 * 359.97438 * 15 13 11 37 37 H 1.09000 * 109.47223 * 300.00336 * 16 15 13 38 38 H 1.09003 * 109.47444 * 59.99816 * 16 15 13 39 39 H 1.09000 * 109.47230 * 300.00540 * 17 16 15 40 40 H 1.09011 * 109.46510 * 59.99825 * 17 16 15 41 41 H 0.96992 * 120.00054 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6653 0.0005 5 6 1.5108 4.0112 0.0011 6 6 0.4088 5.0391 0.0011 7 6 2.8330 4.4179 0.0016 8 6 3.8490 3.4810 0.0069 9 6 3.5446 2.1275 0.0011 10 7 4.5712 1.1775 0.0016 11 6 5.7870 1.4990 -0.4830 12 8 5.9642 2.5776 -1.0110 13 6 6.9176 0.5307 -0.3650 14 8 6.7404 -0.5477 0.1629 15 7 8.1348 0.8543 -0.8446 16 6 9.2439 -0.0958 -0.7293 17 6 10.5037 0.5132 -1.3480 18 6 11.6448 -0.4640 -1.2288 19 1 11.4872 -1.4233 -0.7584 20 6 12.8900 -0.1329 -1.7194 21 7 13.0819 1.0355 -2.2919 22 14 14.3043 -1.3444 -1.5723 23 1 13.9582 -2.5985 -2.2885 24 1 15.5270 -0.7532 -2.1728 25 1 14.5515 -1.6449 -0.1392 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 0.1637 2.3517 0.0002 30 1 0.1429 5.2866 1.0288 31 1 0.7503 5.9379 -0.5123 32 1 -0.4638 4.6363 -0.5132 33 1 3.0720 5.4711 0.0016 34 1 4.8801 3.8026 0.0119 35 1 4.4079 0.2874 0.3507 36 1 8.2763 1.7160 -1.2668 37 1 9.4254 -0.3165 0.3226 38 1 8.9899 -1.0164 -1.2549 39 1 10.3219 0.7335 -2.3999 40 1 10.7579 1.4339 -0.8227 41 1 13.9580 1.2686 -2.6367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411360485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:27 Heat of formation + Delta-G solvation = -71.508285 kcal Electronic energy + Delta-G solvation = -23477.644965 eV Core-core repulsion = 19868.662227 eV Total energy + Delta-G solvation = -3608.982738 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27513 -40.59973 -39.40726 -37.09340 -36.26667 -34.84589 -32.69151 -32.39687 -31.72328 -29.78680 -28.22074 -27.02597 -25.17207 -24.34466 -23.04696 -22.47699 -21.44538 -20.06254 -18.75660 -18.57176 -18.00667 -17.45482 -17.30820 -16.66090 -16.47816 -16.20772 -16.02913 -15.58536 -15.27152 -15.02979 -15.00145 -14.68867 -14.55245 -14.33954 -14.30702 -13.48563 -13.40020 -13.29918 -13.23446 -13.00219 -12.93902 -12.71278 -12.55481 -12.29028 -12.20818 -11.70454 -11.59067 -11.45010 -11.22595 -10.83350 -10.66054 -10.61787 -10.27499 -9.35136 -8.38366 -8.23708 -6.34981 -0.25722 0.18350 0.42656 0.49584 1.11753 1.40854 1.43346 1.45495 1.53558 1.93303 2.36999 2.50910 2.61754 3.11196 3.22807 3.71871 3.93355 4.16464 4.22848 4.26402 4.27224 4.33333 4.35731 4.43164 4.54624 4.79252 4.81995 4.88213 4.90764 4.93318 4.99944 5.00857 5.24333 5.29412 5.40752 5.53660 5.56091 5.72088 5.79279 5.87696 6.11454 6.19215 6.49792 6.74449 6.80986 7.34469 8.88083 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002223 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.723099 B =12594.700573 C =13595.026418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.160 6.160 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.081 4.081 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.127 4.127 9 C 0.131 3.869 10 N -0.631 5.631 11 C 0.515 3.485 12 O -0.510 6.510 13 C 0.505 3.495 14 O -0.544 6.544 15 N -0.682 5.682 16 C 0.137 3.863 17 C 0.019 3.981 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.267 1.267 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.425 0.575 36 H 0.416 0.584 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.221 5.304 5.746 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.081 5.919 3 C -0.228 4.228 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.167 4.167 7 C -0.128 4.128 8 C -0.148 4.148 9 C 0.031 3.969 10 N -0.276 5.276 11 C 0.298 3.702 12 O -0.385 6.385 13 C 0.285 3.715 14 O -0.422 6.422 15 N -0.333 5.333 16 C 0.015 3.985 17 C -0.019 4.019 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.192 1.192 26 H 0.144 0.856 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.174 0.826 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.265 0.735 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.362 4.293 5.666 31.184 hybrid contribution 0.540 0.518 -0.146 0.763 sum -29.823 4.812 5.519 30.708 Atomic orbital electron populations 1.23805 0.90133 1.08758 1.06994 1.85728 1.11645 1.01875 1.92669 1.21582 0.94068 0.98315 1.08798 1.21197 0.98516 0.91967 1.02071 1.20235 0.95347 0.94550 0.98192 1.20849 0.95588 0.96721 1.03535 1.21270 0.91664 1.00222 0.99611 1.21408 1.01671 0.90765 1.00980 1.17467 0.85806 0.89251 1.04366 1.43112 1.08843 1.16562 1.59128 1.20159 0.84005 0.87259 0.78821 1.90731 1.83144 1.23490 1.41151 1.19938 0.84274 0.87003 0.80306 1.90750 1.83625 1.23839 1.43997 1.46029 1.08700 1.21503 1.57097 1.21540 0.84641 0.91386 1.00979 1.19178 0.91067 0.96157 0.95458 1.21416 0.95136 1.02676 1.39159 0.91659 1.25922 1.01768 0.97242 0.94490 1.70069 1.24249 1.22664 1.39743 0.85456 0.77682 0.78810 0.78846 1.19206 1.20863 1.19170 0.85626 0.88145 0.88407 0.82624 0.89776 0.90472 0.90164 0.83364 0.84700 0.73527 0.74707 0.91762 0.91821 0.97339 0.97292 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.15 113.37 1.04 0.01 16 2 S -0.16 -2.92 21.27 -56.49 -1.20 -4.12 16 3 C -0.11 -2.36 6.13 22.73 0.14 -2.22 16 4 C -0.11 -1.77 9.01 22.39 0.20 -1.57 16 5 C -0.08 -1.21 5.88 -19.85 -0.12 -1.33 16 6 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 7 C -0.11 -1.99 9.69 22.28 0.22 -1.78 16 8 C -0.13 -3.16 8.71 22.38 0.20 -2.97 16 9 C 0.13 3.36 6.44 38.31 0.25 3.60 16 10 N -0.63 -17.60 5.16 -304.38 -1.57 -19.17 16 11 C 0.52 16.37 7.69 87.23 0.67 17.04 16 12 O -0.51 -17.25 13.64 -3.38 -0.05 -17.30 16 13 C 0.50 17.81 7.88 87.23 0.69 18.49 16 14 O -0.54 -21.00 16.48 -3.31 -0.05 -21.05 16 15 N -0.68 -25.10 5.55 -464.55 -2.58 -27.67 16 16 C 0.14 5.76 5.61 86.38 0.48 6.25 16 17 C 0.02 0.95 5.09 29.85 0.15 1.11 16 18 C -0.55 -30.13 9.11 25.60 0.23 -29.90 16 19 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 22 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H 0.13 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.54 7.75 -2.39 -0.02 0.52 16 28 H 0.10 0.59 7.75 -2.39 -0.02 0.57 16 29 H 0.16 1.44 5.88 -2.91 -0.02 1.43 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 32 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.14 3.78 5.79 -2.91 -0.02 3.76 16 35 H 0.43 11.38 7.12 -92.71 -0.66 10.72 16 36 H 0.42 14.56 7.94 -92.71 -0.74 13.83 16 37 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -67.82 363.46 1.87 -65.95 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.32 Total: 25.19 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.32 Total: 7.29 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.86 Total: -101.45 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.10 Total: -38.35 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -1.20 Total: -4.12 kcal Total: -67.82 1.87 -65.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411360485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.558 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds