Wall clock time and date at job start Tue Mar 31 2020 13:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47297 * 2 1 4 4 H 1.08997 * 109.46466 * 54.99762 * 3 2 1 5 5 C 1.50696 * 109.47368 * 174.99739 * 3 2 1 6 6 H 1.08005 * 119.99290 * 119.99741 * 5 3 2 7 7 C 1.37871 * 120.00323 * 300.00444 * 5 3 2 8 8 N 1.31517 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99989 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47269 * 90.00067 * 9 7 5 11 11 H 1.48502 * 109.47145 * 210.00602 * 9 7 5 12 12 H 1.48501 * 109.47190 * 330.00469 * 9 7 5 13 13 N 1.46496 * 109.46807 * 295.00150 * 3 2 1 14 14 C 1.34779 * 120.00141 * 85.00000 * 13 3 2 15 15 O 1.21706 * 120.00236 * 359.97438 * 14 13 3 16 16 C 1.46342 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.34888 * 120.00040 * 179.97438 * 16 14 13 18 18 C 1.47108 * 120.00135 * 179.97438 * 17 16 14 19 19 C 1.39918 * 120.14328 * 344.27618 * 18 17 16 20 20 C 1.37765 * 119.85546 * 180.02562 * 19 18 17 21 21 C 1.38709 * 120.14451 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.85784 * 179.97438 * 21 20 19 23 23 C 1.38664 * 120.29082 * 0.02562 * 21 20 19 24 24 C 1.37818 * 120.14520 * 359.71965 * 23 21 20 25 25 N 1.48013 * 120.07728 * 180.27693 * 24 23 21 26 26 O 1.21798 * 119.99959 * 142.75782 * 25 24 23 27 27 O 1.21799 * 120.00206 * 322.76551 * 25 24 23 28 28 H 1.08998 * 109.47206 * 60.00263 * 1 2 3 29 29 H 1.08999 * 109.47095 * 299.99622 * 1 2 3 30 30 H 1.09010 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47508 * 120.00189 * 2 1 3 32 32 H 1.09007 * 109.47396 * 239.99795 * 2 1 3 33 33 H 0.96995 * 120.00532 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00113 * 264.99532 * 13 3 2 35 35 H 1.07999 * 120.00314 * 0.02562 * 16 14 13 36 36 H 1.07995 * 120.00123 * 0.02562 * 17 16 14 37 37 H 1.08001 * 120.07125 * 359.97107 * 19 18 17 38 38 H 1.07995 * 119.92993 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.93214 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8745 -1.3260 2.2645 11 1 3.7941 0.2360 3.8755 12 1 1.7880 0.8092 2.6394 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3424 2.6319 -0.4311 16 6 0.0481 3.3191 -2.6172 17 6 -1.1704 3.8860 -2.7326 18 6 -1.5592 4.5447 -3.9893 19 6 -0.5863 4.8787 -4.9377 20 6 -0.9570 5.4959 -6.1123 21 6 -2.2914 5.7857 -6.3559 22 9 -2.6484 6.3915 -7.5095 23 6 -3.2606 5.4574 -5.4201 24 6 -2.9037 4.8350 -4.2434 25 7 -3.9402 4.4797 -3.2482 26 8 -3.8476 3.4425 -2.6164 27 8 -4.8858 5.2243 -3.0613 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 5.8770 0.4827 2.1132 34 1 2.2719 2.1231 -1.9978 35 1 0.7378 3.3477 -3.4478 36 1 -1.8603 3.8572 -1.9022 37 1 0.4531 4.6540 -4.7491 38 1 -0.2070 5.7546 -6.8450 39 1 -4.2978 5.6861 -5.6156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492569311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:16 Heat of formation + Delta-G solvation = -54.529660 kcal Electronic energy + Delta-G solvation = -26215.832833 eV Core-core repulsion = 22041.373168 eV Total energy + Delta-G solvation = -4174.459666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.23476 -43.42253 -40.97375 -40.34358 -37.82872 -37.23870 -35.21542 -34.40089 -33.36381 -33.24138 -30.89779 -29.43557 -27.87370 -25.77055 -24.60885 -23.97804 -23.09418 -21.64849 -20.91473 -20.56408 -19.93511 -19.36072 -18.74807 -18.03231 -17.75940 -17.62908 -17.26834 -16.90702 -16.73429 -16.32004 -16.10925 -15.42223 -15.21382 -14.96840 -14.60721 -14.26102 -14.09600 -13.93811 -13.75341 -13.60761 -13.33913 -13.09840 -12.95650 -12.83246 -12.76874 -12.40650 -12.35984 -12.15500 -11.86180 -11.48632 -11.37117 -11.23238 -10.89087 -10.86412 -10.82359 -9.86214 -9.59370 -8.37993 -6.42784 -1.46977 -0.76958 -0.11931 0.14777 0.53295 1.27110 1.35949 1.45196 1.96283 2.26120 2.35041 2.40909 2.72950 2.98417 3.07663 3.17009 3.48699 3.57829 3.78313 3.96291 4.04904 4.24696 4.31110 4.33472 4.47366 4.48684 4.61421 4.70720 4.83215 4.95891 5.00032 5.02028 5.12831 5.16599 5.26253 5.30115 5.41494 5.52496 5.64783 6.15116 6.26704 6.59506 6.87348 7.20267 7.45081 8.76850 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.002788 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.537998 B =10040.377133 C =11031.262962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.931 3.069 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.263 1.263 13 N -0.688 5.688 14 C 0.522 3.478 15 O -0.584 6.584 16 C -0.144 4.144 17 C -0.071 4.071 18 C -0.014 4.014 19 C -0.062 4.062 20 C -0.079 4.079 21 C 0.114 3.886 22 F -0.121 7.121 23 C -0.098 4.098 24 C -0.018 4.018 25 N 0.022 4.978 26 O -0.177 6.177 27 O -0.152 6.152 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.270 0.730 34 H 0.411 0.589 35 H 0.183 0.817 36 H 0.117 0.883 37 H 0.197 0.803 38 H 0.200 0.800 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.838 9.551 -20.791 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.143 3.857 4 H 0.039 0.961 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.759 3.241 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.188 1.188 13 N -0.336 5.336 14 C 0.311 3.689 15 O -0.467 6.467 16 C -0.164 4.164 17 C -0.092 4.092 18 C -0.016 4.016 19 C -0.080 4.080 20 C -0.097 4.097 21 C 0.093 3.907 22 F -0.099 7.099 23 C -0.118 4.118 24 C -0.101 4.101 25 N 0.541 4.459 26 O -0.388 6.388 27 O -0.372 6.372 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.200 0.800 36 H 0.135 0.865 37 H 0.214 0.786 38 H 0.217 0.783 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.688 9.617 -20.537 25.985 hybrid contribution -0.519 -0.454 1.079 1.280 sum -13.207 9.163 -19.458 25.239 Atomic orbital electron populations 1.21768 0.95419 1.00499 1.01535 1.22214 0.95585 0.98557 1.01194 1.18801 0.93343 0.89643 0.83926 0.96138 1.21273 0.90159 1.38397 1.06983 0.91913 1.25479 0.95619 0.95942 0.99731 1.69956 1.10123 1.46195 1.30837 0.86120 0.79335 0.80054 0.78616 1.18583 1.22232 1.18773 1.45872 1.15411 1.55214 1.17118 1.18848 0.81941 0.79184 0.88892 1.90820 1.52384 1.61173 1.42278 1.23229 0.97327 0.98370 0.97458 1.22210 0.96826 0.94925 0.95212 1.18907 0.90164 0.97074 0.95423 1.21787 1.00940 0.95029 0.90213 1.21957 0.94657 0.94649 0.98419 1.17461 0.92937 0.97409 0.82857 1.91609 1.92587 1.80250 1.45454 1.20823 1.03268 0.96807 0.90909 1.20897 0.87358 1.09744 0.92094 1.43873 1.01432 0.99727 1.00850 1.94644 1.82654 1.13571 1.47966 1.94526 1.24244 1.47834 1.70645 0.92674 0.94743 0.92388 0.93926 0.90894 0.92100 0.75230 0.80013 0.86537 0.78582 0.78303 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.14 -5.80 5.11 30.59 0.16 -5.65 16 3 C 0.25 11.30 1.83 44.25 0.08 11.38 16 4 H 0.02 1.08 6.63 -2.39 -0.02 1.06 16 5 C -0.53 -27.79 9.31 25.60 0.24 -27.55 16 6 H 0.06 3.44 7.98 -2.91 -0.02 3.42 16 7 C 0.03 1.78 5.45 84.65 0.46 2.24 16 8 N -0.93 -54.78 13.96 21.45 0.30 -54.48 16 9 Si 0.93 44.46 24.41 68.60 1.67 46.13 16 10 H -0.26 -11.71 6.83 99.48 0.68 -11.03 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.26 -12.62 6.53 99.48 0.65 -11.97 16 13 N -0.69 -24.60 5.02 -450.42 -2.26 -26.85 16 14 C 0.52 17.91 6.31 86.35 0.54 18.45 16 15 O -0.58 -25.31 13.36 -4.37 -0.06 -25.36 16 16 C -0.14 -3.19 9.36 23.61 0.22 -2.97 16 17 C -0.07 -1.69 8.44 23.83 0.20 -1.49 16 18 C -0.01 -0.24 5.83 -20.15 -0.12 -0.35 16 19 C -0.06 -0.45 9.35 22.56 0.21 -0.24 16 20 C -0.08 -0.36 10.01 22.27 0.22 -0.13 16 21 C 0.11 1.05 7.31 22.48 0.16 1.21 16 22 F -0.12 -1.22 17.26 44.97 0.78 -0.45 16 23 C -0.10 -1.33 9.63 22.27 0.21 -1.11 16 24 C -0.02 -0.35 6.52 36.67 0.24 -0.11 16 25 N 0.02 0.59 4.26 -45.76 -0.19 0.40 16 26 O -0.18 -5.55 16.56 18.89 0.31 -5.24 16 27 O -0.15 -4.14 18.94 18.89 0.36 -3.78 16 28 H 0.05 2.11 5.64 -2.39 -0.01 2.10 16 29 H 0.03 1.45 7.84 -2.39 -0.02 1.44 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.91 3.22 -2.39 -0.01 1.90 16 32 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 33 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.41 12.00 8.52 -92.71 -0.79 11.21 16 35 H 0.18 2.00 6.35 -2.91 -0.02 1.98 16 36 H 0.12 3.65 5.82 -2.91 -0.02 3.64 16 37 H 0.20 0.19 6.46 -2.91 -0.02 0.17 16 38 H 0.20 -0.56 8.06 -2.91 -0.02 -0.58 16 39 H 0.17 1.95 8.00 -2.91 -0.02 1.92 16 Total: -1.00 -74.32 336.31 4.61 -69.70 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.26 Total: 10.91 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 3.45 Total: -10.98 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.16 Total: -80.94 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: 0.61 Total: -34.38 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.78 Total: -0.45 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.67 Total: 46.13 kcal Total: -74.32 4.61 -69.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492569311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.172 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds