Wall clock time and date at job start Tue Mar 31 2020 13:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 H 1.08999 * 109.47222 * 305.00479 * 3 2 1 5 5 C 1.50700 * 109.47205 * 184.99934 * 3 2 1 6 6 H 1.08002 * 119.99819 * 240.00158 * 5 3 2 7 7 C 1.37877 * 119.99890 * 60.00133 * 5 3 2 8 8 N 1.31512 * 120.00123 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00063 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47086 * 89.99809 * 9 7 5 11 11 H 1.48499 * 109.47004 * 209.99762 * 9 7 5 12 12 H 1.48503 * 109.46634 * 329.99882 * 9 7 5 13 13 N 1.46508 * 109.46921 * 65.00049 * 3 2 1 14 14 C 1.34772 * 119.99654 * 274.99665 * 13 3 2 15 15 O 1.21705 * 120.00557 * 0.02562 * 14 13 3 16 16 C 1.46344 * 119.99686 * 180.02562 * 14 13 3 17 17 C 1.34892 * 120.00147 * 173.25617 * 16 14 13 18 18 C 1.47110 * 119.99685 * 350.09332 * 17 16 14 19 19 C 1.39910 * 120.14700 * 314.38675 * 18 17 16 20 20 C 1.37767 * 119.85641 * 180.22949 * 19 18 17 21 21 C 1.38707 * 120.14257 * 359.77151 * 20 19 18 22 22 F 1.35106 * 119.85549 * 180.02562 * 21 20 19 23 23 C 1.38660 * 120.29081 * 359.97438 * 21 20 19 24 24 C 1.37810 * 120.14734 * 0.02562 * 23 21 20 25 25 N 1.48020 * 120.07663 * 179.97438 * 24 23 21 26 26 O 1.21799 * 119.99863 * 354.04445 * 25 24 23 27 27 O 1.21801 * 119.99932 * 173.77573 * 25 24 23 28 28 H 1.08995 * 109.47173 * 60.00195 * 1 2 3 29 29 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46919 * 299.99653 * 1 2 3 31 31 H 1.08992 * 109.47212 * 240.00240 * 2 1 3 32 32 H 1.08995 * 109.47173 * 119.99804 * 2 1 3 33 33 H 0.96993 * 120.00320 * 180.02562 * 8 7 5 34 34 H 0.96995 * 119.99509 * 95.00038 * 13 3 2 35 35 H 1.08002 * 120.00174 * 353.25142 * 16 14 13 36 36 H 1.07997 * 120.00400 * 170.10056 * 17 16 14 37 37 H 1.08009 * 120.07432 * 0.02562 * 19 18 17 38 38 H 1.07996 * 119.93269 * 179.79363 * 20 19 18 39 39 H 1.07997 * 119.93054 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4063 0.3367 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5538 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3423 2.6319 0.4311 16 6 0.0482 3.3191 2.6172 17 6 -1.1121 4.0034 2.6893 18 6 -1.8812 4.2781 1.4657 19 6 -1.2322 4.7469 0.3183 20 6 -1.9590 5.0068 -0.8229 21 6 -3.3305 4.8000 -0.8374 22 9 -4.0374 5.0562 -1.9598 23 6 -3.9790 4.3304 0.2947 24 6 -3.2637 4.0666 1.4427 25 7 -3.9577 3.5659 2.6505 26 8 -5.1731 3.4895 2.6668 27 8 -3.3129 3.2258 3.6263 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0617 -2.9494 34 1 2.2719 2.1231 1.9978 35 1 0.6915 3.2544 3.4823 36 1 -1.4764 4.3496 3.6452 37 1 -0.1642 4.9080 0.3282 38 1 -1.4598 5.3719 -1.7082 39 1 -5.0470 4.1711 0.2768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492569314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:25 Heat of formation + Delta-G solvation = -48.438452 kcal Electronic energy + Delta-G solvation = -27351.762526 eV Core-core repulsion = 23177.566995 eV Total energy + Delta-G solvation = -4174.195531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.19528 -43.37093 -41.19213 -39.86772 -37.81470 -37.04477 -34.80749 -34.29808 -33.16574 -32.83759 -30.82416 -28.96953 -27.70282 -25.64546 -24.77368 -23.76894 -23.18965 -21.46136 -20.90920 -20.40445 -19.89847 -18.88979 -18.74898 -17.97346 -17.67242 -17.44578 -17.23828 -16.86732 -16.47994 -16.27340 -15.66297 -15.28563 -15.14263 -14.64811 -14.57491 -14.33666 -13.82692 -13.78204 -13.46794 -13.21435 -13.16253 -12.93808 -12.83832 -12.70481 -12.65492 -12.34657 -12.26048 -12.16343 -12.05422 -11.61026 -11.12555 -11.03536 -10.76706 -10.54840 -10.49346 -9.56167 -9.41161 -8.15487 -6.31965 -1.36454 -0.53582 0.19252 0.26360 0.50979 1.45320 1.46864 1.55939 2.13850 2.37298 2.42879 2.72454 2.83257 3.15057 3.20775 3.28166 3.60815 3.73329 3.94542 4.04538 4.28206 4.48064 4.50407 4.55217 4.61418 4.71350 4.75145 4.79933 5.04157 5.06955 5.08548 5.21469 5.31442 5.40642 5.42374 5.56807 5.63432 5.80677 5.94426 6.17767 6.48162 6.76708 7.01265 7.35353 7.58035 8.89300 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003606 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.062783 B = 7763.604918 C = 8454.050382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.282 3.718 4 H 0.008 0.992 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.693 5.693 14 C 0.515 3.485 15 O -0.573 6.573 16 C -0.165 4.165 17 C -0.054 4.054 18 C 0.007 3.993 19 C -0.014 4.014 20 C -0.109 4.109 21 C 0.106 3.894 22 F -0.127 7.127 23 C -0.111 4.111 24 C -0.027 4.027 25 N 0.036 4.964 26 O -0.184 6.184 27 O -0.152 6.152 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.405 0.595 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.152 0.848 38 H 0.170 0.830 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 10.482 8.300 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.178 3.822 4 H 0.026 0.974 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.341 5.341 14 C 0.304 3.696 15 O -0.456 6.456 16 C -0.186 4.186 17 C -0.074 4.074 18 C 0.005 3.995 19 C -0.033 4.033 20 C -0.128 4.128 21 C 0.086 3.914 22 F -0.105 7.105 23 C -0.131 4.131 24 C -0.110 4.110 25 N 0.552 4.448 26 O -0.394 6.394 27 O -0.369 6.369 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.195 0.805 36 H 0.194 0.806 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.421 10.592 6.831 15.158 hybrid contribution 0.734 -0.605 -0.185 0.969 sum -7.688 9.986 6.646 14.248 Atomic orbital electron populations 1.21646 0.97131 0.98698 1.00223 1.21797 0.93493 0.99694 1.01082 1.18324 0.93397 0.88860 0.81599 0.97417 1.21593 0.91632 1.38729 1.06464 0.90952 1.25686 1.02804 0.94497 0.95181 1.70033 1.36894 1.38420 1.09922 0.85464 0.79761 0.78807 0.77024 1.20125 1.21533 1.18715 1.46268 1.15305 1.54912 1.17568 1.19014 0.82037 0.79654 0.88857 1.90809 1.51519 1.61226 1.42067 1.23392 0.97598 0.99406 0.98155 1.22603 0.91932 0.96617 0.96235 1.19077 0.89378 0.94582 0.96454 1.21147 1.00265 0.92407 0.89462 1.21647 0.91807 0.98545 1.00764 1.17327 0.89806 1.01673 0.82581 1.91555 1.78474 1.91651 1.48828 1.20701 1.02900 0.99493 0.90032 1.20814 0.92242 1.11361 0.86627 1.43545 1.00974 0.98033 1.02242 1.94527 0.96125 1.59585 1.89166 1.94476 1.66507 1.50191 1.25747 0.95342 0.94530 0.93768 0.91232 0.94430 0.92750 0.75974 0.80479 0.80589 0.83008 0.81265 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.51 71.98 0.61 -4.55 16 2 C -0.12 -5.68 5.45 30.60 0.17 -5.51 16 3 C 0.28 13.08 2.24 44.24 0.10 13.18 16 4 H 0.01 0.44 7.58 -2.39 -0.02 0.42 16 5 C -0.55 -26.75 8.73 25.60 0.22 -26.53 16 6 H 0.07 3.31 7.74 -2.91 -0.02 3.28 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -49.99 11.29 21.45 0.24 -49.75 16 9 Si 0.96 40.08 29.54 68.60 2.03 42.11 16 10 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 N -0.69 -24.56 5.02 -450.40 -2.26 -26.82 16 14 C 0.52 16.69 5.42 86.35 0.47 17.15 16 15 O -0.57 -21.83 9.28 -4.37 -0.04 -21.87 16 16 C -0.17 -3.68 9.93 23.61 0.23 -3.45 16 17 C -0.05 -1.18 7.90 23.83 0.19 -0.99 16 18 C 0.01 0.18 4.49 -20.15 -0.09 0.09 16 19 C -0.01 -0.35 6.60 22.56 0.15 -0.20 16 20 C -0.11 -2.54 10.01 22.27 0.22 -2.31 16 21 C 0.11 2.54 7.31 22.48 0.16 2.71 16 22 F -0.13 -3.01 17.26 44.97 0.78 -2.23 16 23 C -0.11 -2.73 9.52 22.27 0.21 -2.51 16 24 C -0.03 -0.71 6.87 36.67 0.25 -0.46 16 25 N 0.04 1.02 4.45 -45.75 -0.20 0.82 16 26 O -0.18 -5.42 18.46 18.89 0.35 -5.08 16 27 O -0.15 -4.25 15.85 18.88 0.30 -3.95 16 28 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16 31 H 0.07 3.70 5.95 -2.39 -0.01 3.68 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.41 11.95 8.52 -92.71 -0.79 11.16 16 35 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.18 3.00 6.85 -2.91 -0.02 2.98 16 37 H 0.15 3.72 7.14 -2.91 -0.02 3.70 16 38 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 39 H 0.17 3.65 7.62 -2.91 -0.02 3.63 16 Total: -1.00 -61.51 336.32 4.86 -56.65 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.32 Total: 22.13 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 3.35 Total: -12.00 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -2.22 Total: -75.75 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: 0.61 Total: -30.90 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -61.51 4.86 -56.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492569314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.209 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds